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The map label for this gene is crtH [H]

Identifier: 148242145

GI number: 148242145

Start: 947545

End: 949119

Strand: Direct

Name: crtH [H]

Synonym: SynRCC307_1046

Alternate gene names: 148242145

Gene position: 947545-949119 (Clockwise)

Preceding gene: 148242142

Following gene: 148242147

Centisome position: 42.59

GC content: 62.41

Gene sequence:

>1575_bases
ATGCGGCCAAGAGGCGCCAATCTGGCGGCATCCTCGCGGAACACCGTGGCCAGCAAAACCGGCGTGATCGTCATCGGTAG
CGGTATTGGCGGGCTCTGCTGCGCCGGACTGCTGGCTCGCGGTGGCAAGGAGGTGGTGGTGCTTGAGGCCCACAGCAAGC
CCGGTGGTGCGGCCCACGGATTTGGCAAGACCTATCACTACGAATCCGGCCCCTCGCTATGGAGTGGTTTGGGCCGCTGG
CCCAGTAGCAATCCCCTGGCCCAGATCCTGCGGGCCCTCGGCCAGGAACTGGAGGTGATCGAATATCGCGATTGGGATGT
GTTGTTCCCGGAAGGGCATCTGCGCATTGGTGTGGGCAACGCCGACTTCGAAGCGGTGGTGCAGCAGTTGCGGGGGGCCG
CGGCGGTGGCGGAATGGCAACGCTTCATGCAGGTTTTGCAGCCGATTGCAGCTGCTGCCGATGCCTTGCCGCTGTTAGCG
CTTCGCCCAGGAGCCGATGTGATGGCCCAGCTGCTGCGCCGCGGCGGACAGCTGTTGCCGCACCTGGCGTCAATGCGCCA
TCTCGGTGGTGCCTTTGGTCCTTTGGTGGATCAGCACCTGCGTGATCCTTTTCTGCGCCATTGGGCGGATTTGCTCTGTT
TTTTGATCAGCGGTCTACCGATGGGCGGCACCAATGCCGCAGCTATGGCCACGTTGTTTGGTCAGTGGTTTGAACCCGAT
GCCTGTTTGGATTTCCCTAAAGGCGGCAGCAAGGCTGTGGTGATGGCTTTGGTGCGCGGTTTGGAAGCCCATGGCGGTGA
GCTGCGTCTGCGCAGCCGCGTCAAGCGCGTGCTGCTCGATGGGGAGCGCGCCATTGGCGTTGAGCTGGAGAGCGGAGAGC
AGATCCACGCCGAGCATGTGGTGAGCAATGCCGATGTGTGGAGCACGCTCAAGCTGCTGCCCGAGGGGGTGGCGCGGCGC
TGGCAGCGGCAACGGGGCGCCACACCAGCCTGCGGTTCGTTTTTGCATTTGCATCTGGGCTTCGATGCCACGGGTCTGGA
CGACCTACCGATTCACACGGTGTGGGTGGGGGACTGGGAGCGCGGCATCACCGCCGAACGCAACGCTGTTGTGGTGTCGA
TTCCTTCTGTCCTGGATCCCTCCATGGCACCAGCTGGCCGCCACGTGCTGCATGCCTACACGCCAGCCAATGAGCCCTGG
GAGCTTTGGCAGGGCCTTGAGCGCGATAGCCCTGACTATCAGCAGTTGCGCCGTGAGCGCTGTCAGGTGTTTTGGGATGT
GTTGGAGCAGCGCATTCCAGACATTCGCCAGCGCTGCGATGTGGTGATGGAAGGAACGCCTCTCACCCACCGACGTTTTC
TCAACGTTCACAACGGCAGCTATGGGCCAGCGCTACCAGCCAATGAGGGTCTCTTCCCTGGTGTGACCACACCGCTCAAA
CAGTTTTGGATGTGTGGCTCCAGCACCTTCCCTGGCATTGGTATTCCTCCGGTGGCCGCTAGTGGCGCCTTGGCAGCCCA
CGGAATCCTGGGCCGTCAGAACCAACAGGAACTGCTGGAGAGCCTTGGTTTGTAG

Upstream 100 bases:

>100_bases
AGCGTGAAGGCATCGCTGTGATCCAACGGGATGGGTGTTTCGGGGTACTGCTCATTCAGCCGGCGGATGATCGTTTCAAC
GCGTTCCTGCTTCTTCACGG

Downstream 100 bases:

>100_bases
CGGGGTTTAGTGCTGGTGCTCGACGCCGACCTCATCGCTGGCGTCGTGGTTCGGATGGGCACTGACCGAAACAGGCAGCA
GCAGGGCAGCCAGGGCAAAC

Product: carotenoid isomerase

Products: NA

Alternate protein names: Phytoene desaturase [H]

Number of amino acids: Translated: 524; Mature: 524

Protein sequence:

>524_residues
MRPRGANLAASSRNTVASKTGVIVIGSGIGGLCCAGLLARGGKEVVVLEAHSKPGGAAHGFGKTYHYESGPSLWSGLGRW
PSSNPLAQILRALGQELEVIEYRDWDVLFPEGHLRIGVGNADFEAVVQQLRGAAAVAEWQRFMQVLQPIAAAADALPLLA
LRPGADVMAQLLRRGGQLLPHLASMRHLGGAFGPLVDQHLRDPFLRHWADLLCFLISGLPMGGTNAAAMATLFGQWFEPD
ACLDFPKGGSKAVVMALVRGLEAHGGELRLRSRVKRVLLDGERAIGVELESGEQIHAEHVVSNADVWSTLKLLPEGVARR
WQRQRGATPACGSFLHLHLGFDATGLDDLPIHTVWVGDWERGITAERNAVVVSIPSVLDPSMAPAGRHVLHAYTPANEPW
ELWQGLERDSPDYQQLRRERCQVFWDVLEQRIPDIRQRCDVVMEGTPLTHRRFLNVHNGSYGPALPANEGLFPGVTTPLK
QFWMCGSSTFPGIGIPPVAASGALAAHGILGRQNQQELLESLGL

Sequences:

>Translated_524_residues
MRPRGANLAASSRNTVASKTGVIVIGSGIGGLCCAGLLARGGKEVVVLEAHSKPGGAAHGFGKTYHYESGPSLWSGLGRW
PSSNPLAQILRALGQELEVIEYRDWDVLFPEGHLRIGVGNADFEAVVQQLRGAAAVAEWQRFMQVLQPIAAAADALPLLA
LRPGADVMAQLLRRGGQLLPHLASMRHLGGAFGPLVDQHLRDPFLRHWADLLCFLISGLPMGGTNAAAMATLFGQWFEPD
ACLDFPKGGSKAVVMALVRGLEAHGGELRLRSRVKRVLLDGERAIGVELESGEQIHAEHVVSNADVWSTLKLLPEGVARR
WQRQRGATPACGSFLHLHLGFDATGLDDLPIHTVWVGDWERGITAERNAVVVSIPSVLDPSMAPAGRHVLHAYTPANEPW
ELWQGLERDSPDYQQLRRERCQVFWDVLEQRIPDIRQRCDVVMEGTPLTHRRFLNVHNGSYGPALPANEGLFPGVTTPLK
QFWMCGSSTFPGIGIPPVAASGALAAHGILGRQNQQELLESLGL
>Mature_524_residues
MRPRGANLAASSRNTVASKTGVIVIGSGIGGLCCAGLLARGGKEVVVLEAHSKPGGAAHGFGKTYHYESGPSLWSGLGRW
PSSNPLAQILRALGQELEVIEYRDWDVLFPEGHLRIGVGNADFEAVVQQLRGAAAVAEWQRFMQVLQPIAAAADALPLLA
LRPGADVMAQLLRRGGQLLPHLASMRHLGGAFGPLVDQHLRDPFLRHWADLLCFLISGLPMGGTNAAAMATLFGQWFEPD
ACLDFPKGGSKAVVMALVRGLEAHGGELRLRSRVKRVLLDGERAIGVELESGEQIHAEHVVSNADVWSTLKLLPEGVARR
WQRQRGATPACGSFLHLHLGFDATGLDDLPIHTVWVGDWERGITAERNAVVVSIPSVLDPSMAPAGRHVLHAYTPANEPW
ELWQGLERDSPDYQQLRRERCQVFWDVLEQRIPDIRQRCDVVMEGTPLTHRRFLNVHNGSYGPALPANEGLFPGVTTPLK
QFWMCGSSTFPGIGIPPVAASGALAAHGILGRQNQQELLESLGL

Specific function: This enzyme converts phytoene into lycopene via the intermediaries of phytofluene, zeta-carotene and neurosporene by the introduction of four double bonds [H]

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002937
- InterPro:   IPR008150
- InterPro:   IPR014105 [H]

Pfam domain/function: PF01593 Amino_oxidase [H]

EC number: NA

Molecular weight: Translated: 56764; Mature: 56764

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPRGANLAASSRNTVASKTGVIVIGSGIGGLCCAGLLARGGKEVVVLEAHSKPGGAAHG
CCCCCCCCCCCCCCCHHCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC
FGKTYHYESGPSLWSGLGRWPSSNPLAQILRALGQELEVIEYRDWDVLFPEGHLRIGVGN
CCCCEEECCCCHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCEEECCCCCEEEEECC
ADFEAVVQQLRGAAAVAEWQRFMQVLQPIAAAADALPLLALRPGADVMAQLLRRGGQLLP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHCCCHHHH
HLASMRHLGGAFGPLVDQHLRDPFLRHWADLLCFLISGLPMGGTNAAAMATLFGQWFEPD
HHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC
ACLDFPKGGSKAVVMALVRGLEAHGGELRLRSRVKRVLLDGERAIGVELESGEQIHAEHV
CCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHH
VSNADVWSTLKLLPEGVARRWQRQRGATPACGSFLHLHLGFDATGLDDLPIHTVWVGDWE
HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCHH
RGITAERNAVVVSIPSVLDPSMAPAGRHVLHAYTPANEPWELWQGLERDSPDYQQLRRER
CCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCHHHHHHCCCCCCCHHHHHHHHH
CQVFWDVLEQRIPDIRQRCDVVMEGTPLTHRRFLNVHNGSYGPALPANEGLFPGVTTPLK
HHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHEECCCCCCCCCCCCCCCCCCCCCHHHH
QFWMCGSSTFPGIGIPPVAASGALAAHGILGRQNQQELLESLGL
HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHCC
>Mature Secondary Structure
MRPRGANLAASSRNTVASKTGVIVIGSGIGGLCCAGLLARGGKEVVVLEAHSKPGGAAHG
CCCCCCCCCCCCCCCHHCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC
FGKTYHYESGPSLWSGLGRWPSSNPLAQILRALGQELEVIEYRDWDVLFPEGHLRIGVGN
CCCCEEECCCCHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCEEECCCCCEEEEECC
ADFEAVVQQLRGAAAVAEWQRFMQVLQPIAAAADALPLLALRPGADVMAQLLRRGGQLLP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHCCCHHHH
HLASMRHLGGAFGPLVDQHLRDPFLRHWADLLCFLISGLPMGGTNAAAMATLFGQWFEPD
HHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC
ACLDFPKGGSKAVVMALVRGLEAHGGELRLRSRVKRVLLDGERAIGVELESGEQIHAEHV
CCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHH
VSNADVWSTLKLLPEGVARRWQRQRGATPACGSFLHLHLGFDATGLDDLPIHTVWVGDWE
HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCHH
RGITAERNAVVVSIPSVLDPSMAPAGRHVLHAYTPANEPWELWQGLERDSPDYQQLRRER
CCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCHHHHHHCCCCCCCHHHHHHHHH
CQVFWDVLEQRIPDIRQRCDVVMEGTPLTHRRFLNVHNGSYGPALPANEGLFPGVTTPLK
HHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHEECCCCCCCCCCCCCCCCCCCCCHHHH
QFWMCGSSTFPGIGIPPVAASGALAAHGILGRQNQQELLESLGL
HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7592436 [H]