Definition Synechococcus sp. RCC307, complete genome.
Accession NC_009482
Length 2,224,914

Click here to switch to the map view.

The map label for this gene is 148242027

Identifier: 148242027

GI number: 148242027

Start: 853333

End: 853965

Strand: Direct

Name: 148242027

Synonym: SynRCC307_0928

Alternate gene names: NA

Gene position: 853333-853965 (Clockwise)

Preceding gene: 148242026

Following gene: 148242029

Centisome position: 38.35

GC content: 60.03

Gene sequence:

>633_bases
TTGGAGCTTGTGCTGATTTGGTTGATTCCCTTCTCCCAGCGCTTCCCGCTGATCATTGATCTGGGTGCCGTCGCGCTGGA
GGTGTTCTTTCTCAACCTGGTGGTTCATCTCTCTGTGCTGCGCTCTGGTCGGCGCTTGGTCTACGCCCTTGGTGGCTGCT
CGTTGTTGGTTGAGTTGCTGTGGATCATGTCCCGTCATGGGAGCGCTGCCGGGGCCATGCCAGTTCCCTGGATCGGGAGC
CTGGCGCTGCTGCGCTTTGTGTTGTTTGTGCTCTTTTTCGGGCTGGTCCAGGTGCGGCTGGTGCGGTCGTTGATCCGTGA
GCCTTTTGTCACAACGTCGGTGTTGATGGGTGCCGCGGCTGGCTATGTGCTGATTGGTTTGTTGGGTGGGGTGCTGCTCA
ACACCTTGTTTCTGCTCCATCCGGTGGCCTTTGGAGGGCTGCCCTCTCCCCCCGATGCCACGCTCACCATGGCGTCCCTT
GAGTTGCTCACCACTGTGGGCTCAGGTGCCCTGGTGAGCTCCAATTTGGCGGCGCAGGCGGCCGCCTTCACGATCACGCT
GACGGGGCAGATGTATGTGGCGATTTTGATTGCTCTGGTGCTGGGCCGGTTTCATCGCCGTGTTCCCCATTGA

Upstream 100 bases:

>100_bases
ACGGTGGCAGTACAGCGCCAGCGTCATGGGGATGCATCAGCAGCGATGGGATATCGCCAAGATTCGCCGGCGTCATAAGG
CTTACCGGAATCTGCTCCTG

Downstream 100 bases:

>100_bases
AGAGAGAACGCCAGAGCCGTTCCTGCTCTATGGCCTCTAGCGTTCCCTCCAGCGGGAAAGCCGCCAGGAAATCTTTGTCG
GCTAGGGGCTCATAGGGCCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MELVLIWLIPFSQRFPLIIDLGAVALEVFFLNLVVHLSVLRSGRRLVYALGGCSLLVELLWIMSRHGSAAGAMPVPWIGS
LALLRFVLFVLFFGLVQVRLVRSLIREPFVTTSVLMGAAAGYVLIGLLGGVLLNTLFLLHPVAFGGLPSPPDATLTMASL
ELLTTVGSGALVSSNLAAQAAAFTITLTGQMYVAILIALVLGRFHRRVPH

Sequences:

>Translated_210_residues
MELVLIWLIPFSQRFPLIIDLGAVALEVFFLNLVVHLSVLRSGRRLVYALGGCSLLVELLWIMSRHGSAAGAMPVPWIGS
LALLRFVLFVLFFGLVQVRLVRSLIREPFVTTSVLMGAAAGYVLIGLLGGVLLNTLFLLHPVAFGGLPSPPDATLTMASL
ELLTTVGSGALVSSNLAAQAAAFTITLTGQMYVAILIALVLGRFHRRVPH
>Mature_210_residues
MELVLIWLIPFSQRFPLIIDLGAVALEVFFLNLVVHLSVLRSGRRLVYALGGCSLLVELLWIMSRHGSAAGAMPVPWIGS
LALLRFVLFVLFFGLVQVRLVRSLIREPFVTTSVLMGAAAGYVLIGLLGGVLLNTLFLLHPVAFGGLPSPPDATLTMASL
ELLTTVGSGALVSSNLAAQAAAFTITLTGQMYVAILIALVLGRFHRRVPH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22542; Mature: 22542

Theoretical pI: Translated: 10.98; Mature: 10.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELVLIWLIPFSQRFPLIIDLGAVALEVFFLNLVVHLSVLRSGRRLVYALGGCSLLVELL
CCEEEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHH
WIMSRHGSAAGAMPVPWIGSLALLRFVLFVLFFGLVQVRLVRSLIREPFVTTSVLMGAAA
HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
GYVLIGLLGGVLLNTLFLLHPVAFGGLPSPPDATLTMASLELLTTVGSGALVSSNLAAQA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHH
AAFTITLTGQMYVAILIALVLGRFHRRVPH
HEEEEEECHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MELVLIWLIPFSQRFPLIIDLGAVALEVFFLNLVVHLSVLRSGRRLVYALGGCSLLVELL
CCEEEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHH
WIMSRHGSAAGAMPVPWIGSLALLRFVLFVLFFGLVQVRLVRSLIREPFVTTSVLMGAAA
HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
GYVLIGLLGGVLLNTLFLLHPVAFGGLPSPPDATLTMASLELLTTVGSGALVSSNLAAQA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHH
AAFTITLTGQMYVAILIALVLGRFHRRVPH
HEEEEEECHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA