| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
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The map label for this gene is 148241818
Identifier: 148241818
GI number: 148241818
Start: 649172
End: 650710
Strand: Direct
Name: 148241818
Synonym: SynRCC307_0719
Alternate gene names: NA
Gene position: 649172-650710 (Clockwise)
Preceding gene: 148241815
Following gene: 148241833
Centisome position: 29.18
GC content: 62.64
Gene sequence:
>1539_bases TTGTCCCTGTCGCAGGCACTGCGAACTCTGACCCATGGCCTGCTCGCGTTGGCGATCAGCCTGGGCTCTGTGCCCCGCGC CCCAGCGGCTGAGCAGTTGCTGGTGCGCTTCAGTGGCTTGGAGCTGCCGTTGGATCTCAACGAATTGGAGTCTTGGGCGT TGCGGCCCAAGGTCAACGCTGAACTGGGACCTTGGCTGAATTTGCTGGATCCAGCCACGCGCCAAGATTTGCAGCGCATC TTGCGGCAACCCCTGAATCTTGAAAGCAGCACCATTGCGTTGCTGCTGGACAGTTGGGCGGGGCGCCAATTGGTGTTGCA GCTGGGGTCCTTGCTCCGCAGCGCCGATGGTGATGGCGGTCCTCTGCTGCTGGACCTGCTTCAGCGACGAGGCCGCAGCA CCGTGGTGAGTTTGTTGAAGGAAGCACCCACCTCCCATTTGGAGTTGGATCTCGATGCTCTCTCTGCGCTTGGTTTCCGG TTGCGAGGCCAGTTGGAGCAGCAAAAAAATCTGCTGAAACAGCTCAATGACCTGCGGCTGATGCCGCTGCCTGTATTCCG CTCAACGCGCGGCCCGGTACGGCATCAACAGCGCAGCTTGGCGGTGGAGCACCGCGAAGCCCCCTTGGCACTTGATCTGT GGTGGCCCGCTGGTGGGGCTCCAGCCAAACGATGGCTGCTGTTCAGCCATGGTCTGGGGGGCTCGACGGCCCAGATGGAA TGGCTGGCCAGTGAGTTAGCTGCCCAGGGATGGCCGGTGTTGGCTGTGCAGCATCCCGGTAGTGACGACACCGCCGTGCG CGGCTTGTTGGAAGGCCGCCAAACCCTGCCTGGGCTGGAAACCTTGCCTGCCCGTTTGCAGGACTTGCAGGCGCTGCAGA GGGCCGTCCGGGATGGTCGCCTTGGATTTGGGCCCCATGGCAGCCCGCCTCGGCTGGTGTTGTTGGGCCATTCCCTTGGT GCCTTATCCAGCCTGCTGTGGGCCGGAGCGGATGTGGAACCTGGCCTGGCTGAGCGCTGCAGCCAAAACCTGCAGCAGAT CCCCGTACTCGACAGCTCTTTTCTGTTGCAGTGCCAGCTCACCGAGCTCAGCCTGCCGGCGCTGGAGCCTCCGGTCGGCC TGGATGCTGTGGTGGTGCTCAATAGCTTTGGCAGCTTGCTTTGGGGTGAGCGGGGATTGGCCTCGATCGCTGGACCCGTG CTGAGCATCGGCGGCAGCATGGACTTGATCACACCGCCGCTGAATGAACAGGTGCGGCCATTCCAACAGCTGCAGCATTC GGGAAGCCGGCTGGCGCTCGTCGAGGGCGGCAGCCATTTCTCAGCCGTAGGCCTGCGGCGTGATCAGGCGTTGATGCGCT TGGGCTCGGATTTGGTCGGTGAAGATCCCCGCCTGGTTCAACAGGCGTTGGTGGAGCTGCACGTTCGCTTTTTAGACAGC CTTGATGAGGGGGAGACGCCCCCGAGTGGTGTGCAGTCGGTCGCTGGGGTGCGCACTTACGTGCTTGATGGCCCGATGGC TAAGTCTCTGCTGCCTTAA
Upstream 100 bases:
>100_bases AACAGAATTCCGCCCGCGCCCAGCATCGCCAGGGCGCGAAACATGGCGACAAGTCGCAAATTCCAGGGAAACTGGAGCCA CCATTTGGCCAGCTGCACCG
Downstream 100 bases:
>100_bases AACTTCAGCCGCGGATCCAGCAGCGCCACCACCACATCCACCGCCAGATTCACCATCACCACCAAAGCGGCGATCACCAC CACAATCCCTTGCACCAGGG
Product: fused dienelactone hydrolase/uncharacterized domain
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 512; Mature: 511
Protein sequence:
>512_residues MSLSQALRTLTHGLLALAISLGSVPRAPAAEQLLVRFSGLELPLDLNELESWALRPKVNAELGPWLNLLDPATRQDLQRI LRQPLNLESSTIALLLDSWAGRQLVLQLGSLLRSADGDGGPLLLDLLQRRGRSTVVSLLKEAPTSHLELDLDALSALGFR LRGQLEQQKNLLKQLNDLRLMPLPVFRSTRGPVRHQQRSLAVEHREAPLALDLWWPAGGAPAKRWLLFSHGLGGSTAQME WLASELAAQGWPVLAVQHPGSDDTAVRGLLEGRQTLPGLETLPARLQDLQALQRAVRDGRLGFGPHGSPPRLVLLGHSLG ALSSLLWAGADVEPGLAERCSQNLQQIPVLDSSFLLQCQLTELSLPALEPPVGLDAVVVLNSFGSLLWGERGLASIAGPV LSIGGSMDLITPPLNEQVRPFQQLQHSGSRLALVEGGSHFSAVGLRRDQALMRLGSDLVGEDPRLVQQALVELHVRFLDS LDEGETPPSGVQSVAGVRTYVLDGPMAKSLLP
Sequences:
>Translated_512_residues MSLSQALRTLTHGLLALAISLGSVPRAPAAEQLLVRFSGLELPLDLNELESWALRPKVNAELGPWLNLLDPATRQDLQRI LRQPLNLESSTIALLLDSWAGRQLVLQLGSLLRSADGDGGPLLLDLLQRRGRSTVVSLLKEAPTSHLELDLDALSALGFR LRGQLEQQKNLLKQLNDLRLMPLPVFRSTRGPVRHQQRSLAVEHREAPLALDLWWPAGGAPAKRWLLFSHGLGGSTAQME WLASELAAQGWPVLAVQHPGSDDTAVRGLLEGRQTLPGLETLPARLQDLQALQRAVRDGRLGFGPHGSPPRLVLLGHSLG ALSSLLWAGADVEPGLAERCSQNLQQIPVLDSSFLLQCQLTELSLPALEPPVGLDAVVVLNSFGSLLWGERGLASIAGPV LSIGGSMDLITPPLNEQVRPFQQLQHSGSRLALVEGGSHFSAVGLRRDQALMRLGSDLVGEDPRLVQQALVELHVRFLDS LDEGETPPSGVQSVAGVRTYVLDGPMAKSLLP >Mature_511_residues SLSQALRTLTHGLLALAISLGSVPRAPAAEQLLVRFSGLELPLDLNELESWALRPKVNAELGPWLNLLDPATRQDLQRIL RQPLNLESSTIALLLDSWAGRQLVLQLGSLLRSADGDGGPLLLDLLQRRGRSTVVSLLKEAPTSHLELDLDALSALGFRL RGQLEQQKNLLKQLNDLRLMPLPVFRSTRGPVRHQQRSLAVEHREAPLALDLWWPAGGAPAKRWLLFSHGLGGSTAQMEW LASELAAQGWPVLAVQHPGSDDTAVRGLLEGRQTLPGLETLPARLQDLQALQRAVRDGRLGFGPHGSPPRLVLLGHSLGA LSSLLWAGADVEPGLAERCSQNLQQIPVLDSSFLLQCQLTELSLPALEPPVGLDAVVVLNSFGSLLWGERGLASIAGPVL SIGGSMDLITPPLNEQVRPFQQLQHSGSRLALVEGGSHFSAVGLRRDQALMRLGSDLVGEDPRLVQQALVELHVRFLDSL DEGETPPSGVQSVAGVRTYVLDGPMAKSLLP
Specific function: Unknown
COG id: COG4188
COG function: function code R; Predicted dienelactone hydrolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55262; Mature: 55130
Theoretical pI: Translated: 6.30; Mature: 6.30
Prosite motif: PS00120 LIPASE_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLSQALRTLTHGLLALAISLGSVPRAPAAEQLLVRFSGLELPLDLNELESWALRPKVNA CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCC ELGPWLNLLDPATRQDLQRILRQPLNLESSTIALLLDSWAGRQLVLQLGSLLRSADGDGG CCCCCHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC PLLLDLLQRRGRSTVVSLLKEAPTSHLELDLDALSALGFRLRGQLEQQKNLLKQLNDLRL HHHHHHHHHCCHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE MPLPVFRSTRGPVRHQQRSLAVEHREAPLALDLWWPAGGAPAKRWLLFSHGLGGSTAQME CCCCHHHCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHEEEEECCCCCCHHHHH WLASELAAQGWPVLAVQHPGSDDTAVRGLLEGRQTLPGLETLPARLQDLQALQRAVRDGR HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC LGFGPHGSPPRLVLLGHSLGALSSLLWAGADVEPGLAERCSQNLQQIPVLDSSFLLQCQL CCCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEE TELSLPALEPPVGLDAVVVLNSFGSLLWGERGLASIAGPVLSIGGSMDLITPPLNEQVRP HHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHH FQQLQHSGSRLALVEGGSHFSAVGLRRDQALMRLGSDLVGEDPRLVQQALVELHVRFLDS HHHHHCCCCEEEEEECCCCEEHHCCHHHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHH LDEGETPPSGVQSVAGVRTYVLDGPMAKSLLP HCCCCCCCHHHHHHHHHHHHEECCHHHHHCCC >Mature Secondary Structure SLSQALRTLTHGLLALAISLGSVPRAPAAEQLLVRFSGLELPLDLNELESWALRPKVNA CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCC ELGPWLNLLDPATRQDLQRILRQPLNLESSTIALLLDSWAGRQLVLQLGSLLRSADGDGG CCCCCHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC PLLLDLLQRRGRSTVVSLLKEAPTSHLELDLDALSALGFRLRGQLEQQKNLLKQLNDLRL HHHHHHHHHCCHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE MPLPVFRSTRGPVRHQQRSLAVEHREAPLALDLWWPAGGAPAKRWLLFSHGLGGSTAQME CCCCHHHCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHEEEEECCCCCCHHHHH WLASELAAQGWPVLAVQHPGSDDTAVRGLLEGRQTLPGLETLPARLQDLQALQRAVRDGR HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC LGFGPHGSPPRLVLLGHSLGALSSLLWAGADVEPGLAERCSQNLQQIPVLDSSFLLQCQL CCCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEE TELSLPALEPPVGLDAVVVLNSFGSLLWGERGLASIAGPVLSIGGSMDLITPPLNEQVRP HHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHH FQQLQHSGSRLALVEGGSHFSAVGLRRDQALMRLGSDLVGEDPRLVQQALVELHVRFLDS HHHHHCCCCEEEEEECCCCEEHHCCHHHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHH LDEGETPPSGVQSVAGVRTYVLDGPMAKSLLP HCCCCCCCHHHHHHHHHHHHEECCHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA