Definition Synechococcus sp. RCC307, complete genome.
Accession NC_009482
Length 2,224,914

Click here to switch to the map view.

The map label for this gene is 148241818

Identifier: 148241818

GI number: 148241818

Start: 649172

End: 650710

Strand: Direct

Name: 148241818

Synonym: SynRCC307_0719

Alternate gene names: NA

Gene position: 649172-650710 (Clockwise)

Preceding gene: 148241815

Following gene: 148241833

Centisome position: 29.18

GC content: 62.64

Gene sequence:

>1539_bases
TTGTCCCTGTCGCAGGCACTGCGAACTCTGACCCATGGCCTGCTCGCGTTGGCGATCAGCCTGGGCTCTGTGCCCCGCGC
CCCAGCGGCTGAGCAGTTGCTGGTGCGCTTCAGTGGCTTGGAGCTGCCGTTGGATCTCAACGAATTGGAGTCTTGGGCGT
TGCGGCCCAAGGTCAACGCTGAACTGGGACCTTGGCTGAATTTGCTGGATCCAGCCACGCGCCAAGATTTGCAGCGCATC
TTGCGGCAACCCCTGAATCTTGAAAGCAGCACCATTGCGTTGCTGCTGGACAGTTGGGCGGGGCGCCAATTGGTGTTGCA
GCTGGGGTCCTTGCTCCGCAGCGCCGATGGTGATGGCGGTCCTCTGCTGCTGGACCTGCTTCAGCGACGAGGCCGCAGCA
CCGTGGTGAGTTTGTTGAAGGAAGCACCCACCTCCCATTTGGAGTTGGATCTCGATGCTCTCTCTGCGCTTGGTTTCCGG
TTGCGAGGCCAGTTGGAGCAGCAAAAAAATCTGCTGAAACAGCTCAATGACCTGCGGCTGATGCCGCTGCCTGTATTCCG
CTCAACGCGCGGCCCGGTACGGCATCAACAGCGCAGCTTGGCGGTGGAGCACCGCGAAGCCCCCTTGGCACTTGATCTGT
GGTGGCCCGCTGGTGGGGCTCCAGCCAAACGATGGCTGCTGTTCAGCCATGGTCTGGGGGGCTCGACGGCCCAGATGGAA
TGGCTGGCCAGTGAGTTAGCTGCCCAGGGATGGCCGGTGTTGGCTGTGCAGCATCCCGGTAGTGACGACACCGCCGTGCG
CGGCTTGTTGGAAGGCCGCCAAACCCTGCCTGGGCTGGAAACCTTGCCTGCCCGTTTGCAGGACTTGCAGGCGCTGCAGA
GGGCCGTCCGGGATGGTCGCCTTGGATTTGGGCCCCATGGCAGCCCGCCTCGGCTGGTGTTGTTGGGCCATTCCCTTGGT
GCCTTATCCAGCCTGCTGTGGGCCGGAGCGGATGTGGAACCTGGCCTGGCTGAGCGCTGCAGCCAAAACCTGCAGCAGAT
CCCCGTACTCGACAGCTCTTTTCTGTTGCAGTGCCAGCTCACCGAGCTCAGCCTGCCGGCGCTGGAGCCTCCGGTCGGCC
TGGATGCTGTGGTGGTGCTCAATAGCTTTGGCAGCTTGCTTTGGGGTGAGCGGGGATTGGCCTCGATCGCTGGACCCGTG
CTGAGCATCGGCGGCAGCATGGACTTGATCACACCGCCGCTGAATGAACAGGTGCGGCCATTCCAACAGCTGCAGCATTC
GGGAAGCCGGCTGGCGCTCGTCGAGGGCGGCAGCCATTTCTCAGCCGTAGGCCTGCGGCGTGATCAGGCGTTGATGCGCT
TGGGCTCGGATTTGGTCGGTGAAGATCCCCGCCTGGTTCAACAGGCGTTGGTGGAGCTGCACGTTCGCTTTTTAGACAGC
CTTGATGAGGGGGAGACGCCCCCGAGTGGTGTGCAGTCGGTCGCTGGGGTGCGCACTTACGTGCTTGATGGCCCGATGGC
TAAGTCTCTGCTGCCTTAA

Upstream 100 bases:

>100_bases
AACAGAATTCCGCCCGCGCCCAGCATCGCCAGGGCGCGAAACATGGCGACAAGTCGCAAATTCCAGGGAAACTGGAGCCA
CCATTTGGCCAGCTGCACCG

Downstream 100 bases:

>100_bases
AACTTCAGCCGCGGATCCAGCAGCGCCACCACCACATCCACCGCCAGATTCACCATCACCACCAAAGCGGCGATCACCAC
CACAATCCCTTGCACCAGGG

Product: fused dienelactone hydrolase/uncharacterized domain

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 512; Mature: 511

Protein sequence:

>512_residues
MSLSQALRTLTHGLLALAISLGSVPRAPAAEQLLVRFSGLELPLDLNELESWALRPKVNAELGPWLNLLDPATRQDLQRI
LRQPLNLESSTIALLLDSWAGRQLVLQLGSLLRSADGDGGPLLLDLLQRRGRSTVVSLLKEAPTSHLELDLDALSALGFR
LRGQLEQQKNLLKQLNDLRLMPLPVFRSTRGPVRHQQRSLAVEHREAPLALDLWWPAGGAPAKRWLLFSHGLGGSTAQME
WLASELAAQGWPVLAVQHPGSDDTAVRGLLEGRQTLPGLETLPARLQDLQALQRAVRDGRLGFGPHGSPPRLVLLGHSLG
ALSSLLWAGADVEPGLAERCSQNLQQIPVLDSSFLLQCQLTELSLPALEPPVGLDAVVVLNSFGSLLWGERGLASIAGPV
LSIGGSMDLITPPLNEQVRPFQQLQHSGSRLALVEGGSHFSAVGLRRDQALMRLGSDLVGEDPRLVQQALVELHVRFLDS
LDEGETPPSGVQSVAGVRTYVLDGPMAKSLLP

Sequences:

>Translated_512_residues
MSLSQALRTLTHGLLALAISLGSVPRAPAAEQLLVRFSGLELPLDLNELESWALRPKVNAELGPWLNLLDPATRQDLQRI
LRQPLNLESSTIALLLDSWAGRQLVLQLGSLLRSADGDGGPLLLDLLQRRGRSTVVSLLKEAPTSHLELDLDALSALGFR
LRGQLEQQKNLLKQLNDLRLMPLPVFRSTRGPVRHQQRSLAVEHREAPLALDLWWPAGGAPAKRWLLFSHGLGGSTAQME
WLASELAAQGWPVLAVQHPGSDDTAVRGLLEGRQTLPGLETLPARLQDLQALQRAVRDGRLGFGPHGSPPRLVLLGHSLG
ALSSLLWAGADVEPGLAERCSQNLQQIPVLDSSFLLQCQLTELSLPALEPPVGLDAVVVLNSFGSLLWGERGLASIAGPV
LSIGGSMDLITPPLNEQVRPFQQLQHSGSRLALVEGGSHFSAVGLRRDQALMRLGSDLVGEDPRLVQQALVELHVRFLDS
LDEGETPPSGVQSVAGVRTYVLDGPMAKSLLP
>Mature_511_residues
SLSQALRTLTHGLLALAISLGSVPRAPAAEQLLVRFSGLELPLDLNELESWALRPKVNAELGPWLNLLDPATRQDLQRIL
RQPLNLESSTIALLLDSWAGRQLVLQLGSLLRSADGDGGPLLLDLLQRRGRSTVVSLLKEAPTSHLELDLDALSALGFRL
RGQLEQQKNLLKQLNDLRLMPLPVFRSTRGPVRHQQRSLAVEHREAPLALDLWWPAGGAPAKRWLLFSHGLGGSTAQMEW
LASELAAQGWPVLAVQHPGSDDTAVRGLLEGRQTLPGLETLPARLQDLQALQRAVRDGRLGFGPHGSPPRLVLLGHSLGA
LSSLLWAGADVEPGLAERCSQNLQQIPVLDSSFLLQCQLTELSLPALEPPVGLDAVVVLNSFGSLLWGERGLASIAGPVL
SIGGSMDLITPPLNEQVRPFQQLQHSGSRLALVEGGSHFSAVGLRRDQALMRLGSDLVGEDPRLVQQALVELHVRFLDSL
DEGETPPSGVQSVAGVRTYVLDGPMAKSLLP

Specific function: Unknown

COG id: COG4188

COG function: function code R; Predicted dienelactone hydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55262; Mature: 55130

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: PS00120 LIPASE_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLSQALRTLTHGLLALAISLGSVPRAPAAEQLLVRFSGLELPLDLNELESWALRPKVNA
CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCC
ELGPWLNLLDPATRQDLQRILRQPLNLESSTIALLLDSWAGRQLVLQLGSLLRSADGDGG
CCCCCHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
PLLLDLLQRRGRSTVVSLLKEAPTSHLELDLDALSALGFRLRGQLEQQKNLLKQLNDLRL
HHHHHHHHHCCHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE
MPLPVFRSTRGPVRHQQRSLAVEHREAPLALDLWWPAGGAPAKRWLLFSHGLGGSTAQME
CCCCHHHCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHEEEEECCCCCCHHHHH
WLASELAAQGWPVLAVQHPGSDDTAVRGLLEGRQTLPGLETLPARLQDLQALQRAVRDGR
HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
LGFGPHGSPPRLVLLGHSLGALSSLLWAGADVEPGLAERCSQNLQQIPVLDSSFLLQCQL
CCCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEE
TELSLPALEPPVGLDAVVVLNSFGSLLWGERGLASIAGPVLSIGGSMDLITPPLNEQVRP
HHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHH
FQQLQHSGSRLALVEGGSHFSAVGLRRDQALMRLGSDLVGEDPRLVQQALVELHVRFLDS
HHHHHCCCCEEEEEECCCCEEHHCCHHHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHH
LDEGETPPSGVQSVAGVRTYVLDGPMAKSLLP
HCCCCCCCHHHHHHHHHHHHEECCHHHHHCCC
>Mature Secondary Structure 
SLSQALRTLTHGLLALAISLGSVPRAPAAEQLLVRFSGLELPLDLNELESWALRPKVNA
CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCC
ELGPWLNLLDPATRQDLQRILRQPLNLESSTIALLLDSWAGRQLVLQLGSLLRSADGDGG
CCCCCHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
PLLLDLLQRRGRSTVVSLLKEAPTSHLELDLDALSALGFRLRGQLEQQKNLLKQLNDLRL
HHHHHHHHHCCHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE
MPLPVFRSTRGPVRHQQRSLAVEHREAPLALDLWWPAGGAPAKRWLLFSHGLGGSTAQME
CCCCHHHCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHEEEEECCCCCCHHHHH
WLASELAAQGWPVLAVQHPGSDDTAVRGLLEGRQTLPGLETLPARLQDLQALQRAVRDGR
HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
LGFGPHGSPPRLVLLGHSLGALSSLLWAGADVEPGLAERCSQNLQQIPVLDSSFLLQCQL
CCCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEE
TELSLPALEPPVGLDAVVVLNSFGSLLWGERGLASIAGPVLSIGGSMDLITPPLNEQVRP
HHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHH
FQQLQHSGSRLALVEGGSHFSAVGLRRDQALMRLGSDLVGEDPRLVQQALVELHVRFLDS
HHHHHCCCCEEEEEECCCCEEHHCCHHHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHH
LDEGETPPSGVQSVAGVRTYVLDGPMAKSLLP
HCCCCCCCHHHHHHHHHHHHEECCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA