| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
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The map label for this gene is arnT [H]
Identifier: 148241747
GI number: 148241747
Start: 586434
End: 588179
Strand: Direct
Name: arnT [H]
Synonym: SynRCC307_0648
Alternate gene names: 148241747
Gene position: 586434-588179 (Clockwise)
Preceding gene: 148241746
Following gene: 148241748
Centisome position: 26.36
GC content: 65.46
Gene sequence:
>1746_bases TTGGCTTTGATTCGTCGGCAGCGACTGTGGCTGGTGCTGGCTGTGCTGGCGATGGGGGCGCTGCTGTTTGTTTGGCGTCT TGGCGCGGTGGGCCAGTGGGATGAAACCCCGGCCATCTTTGCCGCCTCGGGCCGGGCCATGGCGGAAACCGGCGATTGGC TCACCCCCCGGGTGAATGGCCATCCGCGCTTTGACAAACCCGTTCTGATTTATTGGCTGATCGGCGGTTTCACGGCCCTG CTGCCAGCTGGATGGGATCCCCTGGGTAGTTGGGCCTCCACGTTGCCGTCGGCCCTGGCGATGATCGCCTTGATGCTGGG CTTGGCGCTCACGGTGCTGCCCCGCTCAGGCCCATGGGTGGCGCTGGAGGCGGCCCTGGCCTTTGGCCTTTCGCCCTTGG TGTTGGTCTGGGGCCGGGTCTCCGTGAGTGATCCCTTGCTCGTCGCTTGCGTTGGGCTGGGAATGCTGGGGCTTTGGCAC ACCTATGCCCAACCCCGGGCCCCATTCCCTTGGTGGCCCTGGCTGGTGTTGGGCTTGGGCGTTCTCACCAAAGGGCCCGT GGCCTTGGTGATTGCCGTGCCCAGCCTGCTGTTGTTTGGGTTTTGGCAACGCGATCTCGGCGGGCTTTGCCGCGCCGTTC GCCTGGTCCCTGGTGTTGCTTTGGCCGTGCTGGTGGCCCTGCCCTGGTATGTGCTGGAGCTGCTGGTGGAAGGTCAGCCG TTTTGGGACAGCTTTTTCGGCTACCACAACCTGCAGCGCTACACGGCAGTGGTGAACAACCACGCCGGACCCTGGTGGTT TTACGCCCCGGTGATGGTGATCGCGAGTCTGCCGTTTACGCCCCTGCTGCTGCTGGGCGTCGGTAGCCAGCTTCAGGGCT GCTGGTGGAGGCGGCCGTTGAAACCGGATCAGAGCTTGCCGCGCTTTGCCCTGGCCTGGCTGCTGTTTGTGGTGCTGTTT TTCTCGATTTCAGCCACCAAACTGCCCAGCTACATGCTCCCCGCCCTGCCGGCAGCGGCCCTGTTGATTGCCCTGGCTGA TGCCCCTGGCCGCTGGCTCACCTGGGCCCGTTGGGCGTCGGTGCTGATGGCCGCGGTGATGGCGGCAGCGTTTTGGATCG CGGCGCCGCTGGCGGTTCAGATCGATTCACCGGAGATTCCTGGCCTTGGTCCGGCCCTGGAGGCCTCGGGGGTGCTTGTG ATCAGTGGCGGGGTGTTTGCCCTGGCTGCGATGGCTGGTGCTGTGCTGCTGTGGCGCCGAGGCGGCCGCTGGCCCGGCAG TTGGCTCCTGGCGTTGCAACTTCCCTTGGTGGCTTGGCAGGTGCTGGCCCTGGTTCCCACCGGTGAATTGGTTGATCAGC GGCGTCAGCAGCCCGTGCGTCAGTTGGCTGAGCAGGTGCGCCTGCAGCAGCGGCCGGGCGAACAGCTCGCCATGGTGGGC GTTAACAAGCCTTCGCTGCACTACTACAGCCGCAAGGTGGTGCTTTATGCGGGCCGCCCCCCCAGTGGCCTGTTGGATTT AGCCGAGCAGTTGCCGCCCCAGGCCCCCGGCACAGTGCTGGTGGTGATCGATGCCACCACCGCTGAGCTGCCCCATTGGA AAGACATGCCCCATGAGCAACTCGGCGCTGCTGGGATCTACCGGCTCTGGCGCGTCCCCTTGGATGCGTTGCAGCAGCGT GGCCAGGCCTTAGCGGCCTCCGGTGTGGAATCCACCTGGCGCCTGCCCAACCTCGAGCGATACTGA
Upstream 100 bases:
>100_bases GCTTCTGCAGCAGGGCCTCACCCGCCTTGGGGTTGAGTGCTCCCTAGTGGCTGCTGCCCAGACCCCTGCATAGGCTGGCC TGCATTTCTAACCCCAGCCT
Downstream 100 bases:
>100_bases GCGCCCCCGTTCGGCTAGGTCCATGCCCAAGACCTCTGCATTGCTGCCGGTGATCCTTTGTGGTGGCACGGGCACCCGCC TGTGGCCCCTATCGCGGGCG
Product: glycosyltransferase related to 4-amino-4-deoxy-L-arabinose transferase
Products: NA
Alternate protein names: 4-amino-4-deoxy-L-arabinose lipid A transferase; Lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase; Undecaprenyl phosphate-alpha-L-Ara4N transferase [H]
Number of amino acids: Translated: 581; Mature: 580
Protein sequence:
>581_residues MALIRRQRLWLVLAVLAMGALLFVWRLGAVGQWDETPAIFAASGRAMAETGDWLTPRVNGHPRFDKPVLIYWLIGGFTAL LPAGWDPLGSWASTLPSALAMIALMLGLALTVLPRSGPWVALEAALAFGLSPLVLVWGRVSVSDPLLVACVGLGMLGLWH TYAQPRAPFPWWPWLVLGLGVLTKGPVALVIAVPSLLLFGFWQRDLGGLCRAVRLVPGVALAVLVALPWYVLELLVEGQP FWDSFFGYHNLQRYTAVVNNHAGPWWFYAPVMVIASLPFTPLLLLGVGSQLQGCWWRRPLKPDQSLPRFALAWLLFVVLF FSISATKLPSYMLPALPAAALLIALADAPGRWLTWARWASVLMAAVMAAAFWIAAPLAVQIDSPEIPGLGPALEASGVLV ISGGVFALAAMAGAVLLWRRGGRWPGSWLLALQLPLVAWQVLALVPTGELVDQRRQQPVRQLAEQVRLQQRPGEQLAMVG VNKPSLHYYSRKVVLYAGRPPSGLLDLAEQLPPQAPGTVLVVIDATTAELPHWKDMPHEQLGAAGIYRLWRVPLDALQQR GQALAASGVESTWRLPNLERY
Sequences:
>Translated_581_residues MALIRRQRLWLVLAVLAMGALLFVWRLGAVGQWDETPAIFAASGRAMAETGDWLTPRVNGHPRFDKPVLIYWLIGGFTAL LPAGWDPLGSWASTLPSALAMIALMLGLALTVLPRSGPWVALEAALAFGLSPLVLVWGRVSVSDPLLVACVGLGMLGLWH TYAQPRAPFPWWPWLVLGLGVLTKGPVALVIAVPSLLLFGFWQRDLGGLCRAVRLVPGVALAVLVALPWYVLELLVEGQP FWDSFFGYHNLQRYTAVVNNHAGPWWFYAPVMVIASLPFTPLLLLGVGSQLQGCWWRRPLKPDQSLPRFALAWLLFVVLF FSISATKLPSYMLPALPAAALLIALADAPGRWLTWARWASVLMAAVMAAAFWIAAPLAVQIDSPEIPGLGPALEASGVLV ISGGVFALAAMAGAVLLWRRGGRWPGSWLLALQLPLVAWQVLALVPTGELVDQRRQQPVRQLAEQVRLQQRPGEQLAMVG VNKPSLHYYSRKVVLYAGRPPSGLLDLAEQLPPQAPGTVLVVIDATTAELPHWKDMPHEQLGAAGIYRLWRVPLDALQQR GQALAASGVESTWRLPNLERY >Mature_580_residues ALIRRQRLWLVLAVLAMGALLFVWRLGAVGQWDETPAIFAASGRAMAETGDWLTPRVNGHPRFDKPVLIYWLIGGFTALL PAGWDPLGSWASTLPSALAMIALMLGLALTVLPRSGPWVALEAALAFGLSPLVLVWGRVSVSDPLLVACVGLGMLGLWHT YAQPRAPFPWWPWLVLGLGVLTKGPVALVIAVPSLLLFGFWQRDLGGLCRAVRLVPGVALAVLVALPWYVLELLVEGQPF WDSFFGYHNLQRYTAVVNNHAGPWWFYAPVMVIASLPFTPLLLLGVGSQLQGCWWRRPLKPDQSLPRFALAWLLFVVLFF SISATKLPSYMLPALPAAALLIALADAPGRWLTWARWASVLMAAVMAAAFWIAAPLAVQIDSPEIPGLGPALEASGVLVI SGGVFALAAMAGAVLLWRRGGRWPGSWLLALQLPLVAWQVLALVPTGELVDQRRQQPVRQLAEQVRLQQRPGEQLAMVGV NKPSLHYYSRKVVLYAGRPPSGLLDLAEQLPPQAPGTVLVVIDATTAELPHWKDMPHEQLGAAGIYRLWRVPLDALQQRG QALAASGVESTWRLPNLERY
Specific function: Catalyzes the transfer of the L-Ara4N moiety of the glycolipid undecaprenyl phosphate-alpha-L-Ara4N to lipid A. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]
COG id: COG1807
COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 83 family [H]
Homologues:
Organism=Escherichia coli, GI1788591, Length=316, Percent_Identity=29.746835443038, Blast_Score=89, Evalue=8e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022839 - InterPro: IPR003342 [H]
Pfam domain/function: PF02366 PMT [H]
EC number: =2.4.2.43 [H]
Molecular weight: Translated: 63450; Mature: 63319
Theoretical pI: Translated: 10.08; Mature: 10.08
Prosite motif: PS00307 LECTIN_LEGUME_BETA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALIRRQRLWLVLAVLAMGALLFVWRLGAVGQWDETPAIFAASGRAMAETGDWLTPRVNG CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHCCCCCCCCCCCC HPRFDKPVLIYWLIGGFTALLPAGWDPLGSWASTLPSALAMIALMLGLALTVLPRSGPWV CCCCCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH ALEAALAFGLSPLVLVWGRVSVSDPLLVACVGLGMLGLWHTYAQPRAPFPWWPWLVLGLG HHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH VLTKGPVALVIAVPSLLLFGFWQRDLGGLCRAVRLVPGVALAVLVALPWYVLELLVEGQP HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC FWDSFFGYHNLQRYTAVVNNHAGPWWFYAPVMVIASLPFTPLLLLGVGSQLQGCWWRRPL HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHCCCC KPDQSLPRFALAWLLFVVLFFSISATKLPSYMLPALPAAALLIALADAPGRWLTWARWAS CCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH VLMAAVMAAAFWIAAPLAVQIDSPEIPGLGPALEASGVLVISGGVFALAAMAGAVLLWRR HHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHC GGRWPGSWLLALQLPLVAWQVLALVPTGELVDQRRQQPVRQLAEQVRLQQRPGEQLAMVG CCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE VNKPSLHYYSRKVVLYAGRPPSGLLDLAEQLPPQAPGTVLVVIDATTAELPHWKDMPHEQ CCCCCCEEEEEEEEEEECCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCHHH LGAAGIYRLWRVPLDALQQRGQALAASGVESTWRLPNLERY HHHHHHHHHHHCCHHHHHHCCHHHHHCCCCHHCCCCCCCCC >Mature Secondary Structure ALIRRQRLWLVLAVLAMGALLFVWRLGAVGQWDETPAIFAASGRAMAETGDWLTPRVNG CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHCCCCCCCCCCCC HPRFDKPVLIYWLIGGFTALLPAGWDPLGSWASTLPSALAMIALMLGLALTVLPRSGPWV CCCCCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH ALEAALAFGLSPLVLVWGRVSVSDPLLVACVGLGMLGLWHTYAQPRAPFPWWPWLVLGLG HHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH VLTKGPVALVIAVPSLLLFGFWQRDLGGLCRAVRLVPGVALAVLVALPWYVLELLVEGQP HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC FWDSFFGYHNLQRYTAVVNNHAGPWWFYAPVMVIASLPFTPLLLLGVGSQLQGCWWRRPL HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHCCCC KPDQSLPRFALAWLLFVVLFFSISATKLPSYMLPALPAAALLIALADAPGRWLTWARWAS CCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH VLMAAVMAAAFWIAAPLAVQIDSPEIPGLGPALEASGVLVISGGVFALAAMAGAVLLWRR HHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHC GGRWPGSWLLALQLPLVAWQVLALVPTGELVDQRRQQPVRQLAEQVRLQQRPGEQLAMVG CCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE VNKPSLHYYSRKVVLYAGRPPSGLLDLAEQLPPQAPGTVLVVIDATTAELPHWKDMPHEQ CCCCCCEEEEEEEEEEECCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCHHH LGAAGIYRLWRVPLDALQQRGQALAASGVESTWRLPNLERY HHHHHHHHHHHCCHHHHHHCCHHHHHCCCCHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA