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The map label for this gene is ydeD [C]

Identifier: 148241744

GI number: 148241744

Start: 582181

End: 583371

Strand: Direct

Name: ydeD [C]

Synonym: SynRCC307_0645

Alternate gene names: 148241744

Gene position: 582181-583371 (Clockwise)

Preceding gene: 148241732

Following gene: 148241745

Centisome position: 26.17

GC content: 64.57

Gene sequence:

>1191_bases
ATGGATTTCCTGGCTATCGCCCACCGTGCCGCCGGGGCTGTCGATGCGCAGCAACAACACCGGGAACTTGCGTTCCTCCA
CCTGGCGGAGCGCTTTGACCACCCGCTTGCGGGCGGCTCCAGCGATCGGGCCAGTGAGGCTGATGCGGGCGATGCGTTTA
CGGCGTTGGCGGCGCAGGGGCCAAACCATGGGGCGTGGTGTTGGTCAGCGGATCCTATGCAGGGCGAGGTGCCTAGGCTC
AACGCCGACTTGCTGGCCCCGTTGACCCTGCGCCTCACCTGGCTGGCCATGCTGCTGCCCTTTGCCCTGTGGGGAACGGC
GATGGCAGCGATGAAACCGCTGCTTCAGGAGATCTCGCCCCTAACCCTGGCCTGGTTGCGGATTCTCCCGGCGGCTGTGG
TGTTGTTGCTCGCTGCCCCTCTGCTGCAGCGCCCCTGGCAGGTGGATCGCCGCGATTGGCTGTGGCTGCTGCTGTTTGCC
CTGGTCGATGGCGCCCTGTTCCATGGCCTGCTGGCTGAGGGGCTCGAGCGCACTGGCGCCGGTTTGGGTTCGGTGTTGAT
TGATTCGCAGCCGCTGCTGGTGGCGCTGCTGGCCCGCTCGCTGCTGGGGGAAGCCATCAACCCAATTGGTTGGTTTGGCC
TGCTGCTGGGCTTGTCGGGAATTCTGTGTTTGGGCTTGCCAGCTGGTGCCTTGCAGCATTGGTGGCTCGATGGCCCCGCC
CTCGATGGCTCGCTGTTGCCTGGAGCTGGTGAACTCTTGATGCTGGCCGCAGCTGCGGCCATGGCTGGCGGCACCTTGCT
GTCACGCTGGGCTTGTCGCCACAGCGATCCGGTTGCCATCACCGGCTGGCATCTGTTGTTGGGGGGCGTTCCTTTGTTGC
TGCTCAGCCTGCAGGGCCCCTTGGCCGTGGCTGGTCAGCACTGGCCGCACTTGAGCGCAGCGCAATGGGGCTGGATGGCT
TATGCCAGCTTGTTTGGAACAGCCCTGGCCTATGGCCTGTTCTTTTGGTTTGCCAGCCGCGGTGATCTCACCGGCTTCAC
CTCCCTCACCTTTTTGACCCCCGTGTTTGCCCTCGCCAGTGGCCTGGTGTTGTTGGGTGAGCAACTCGAGCCCTTGCAGT
GGCTTGGGGTGGTGCTGGCGCTGGCCTCGGTGATCTTGATTAATCGCCGCGCAGAGCTGTGGCAGGCCTAA

Upstream 100 bases:

>100_bases
GGTCGGCGGCGCAGCCCACATAGACCCCGCCTGAGGCGGAAATATTCCCGTAACTGGCCACCACCTGGCAGCCGCTCTCG
CGCAGCCGCAGCAGGGCCTG

Downstream 100 bases:

>100_bases
AGCTGCTGGTGGTCAGCACCCCCATGGGCCCGTTGGGACAGGGCTTGGGTGGTGGTGTGGAGCTCACCTTGGAAGCGGTG
CTGGAGAGCTTGCATCGCCG

Product: DMT family permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 396

Protein sequence:

>396_residues
MDFLAIAHRAAGAVDAQQQHRELAFLHLAERFDHPLAGGSSDRASEADAGDAFTALAAQGPNHGAWCWSADPMQGEVPRL
NADLLAPLTLRLTWLAMLLPFALWGTAMAAMKPLLQEISPLTLAWLRILPAAVVLLLAAPLLQRPWQVDRRDWLWLLLFA
LVDGALFHGLLAEGLERTGAGLGSVLIDSQPLLVALLARSLLGEAINPIGWFGLLLGLSGILCLGLPAGALQHWWLDGPA
LDGSLLPGAGELLMLAAAAAMAGGTLLSRWACRHSDPVAITGWHLLLGGVPLLLLSLQGPLAVAGQHWPHLSAAQWGWMA
YASLFGTALAYGLFFWFASRGDLTGFTSLTFLTPVFALASGLVLLGEQLEPLQWLGVVLALASVILINRRAELWQA

Sequences:

>Translated_396_residues
MDFLAIAHRAAGAVDAQQQHRELAFLHLAERFDHPLAGGSSDRASEADAGDAFTALAAQGPNHGAWCWSADPMQGEVPRL
NADLLAPLTLRLTWLAMLLPFALWGTAMAAMKPLLQEISPLTLAWLRILPAAVVLLLAAPLLQRPWQVDRRDWLWLLLFA
LVDGALFHGLLAEGLERTGAGLGSVLIDSQPLLVALLARSLLGEAINPIGWFGLLLGLSGILCLGLPAGALQHWWLDGPA
LDGSLLPGAGELLMLAAAAAMAGGTLLSRWACRHSDPVAITGWHLLLGGVPLLLLSLQGPLAVAGQHWPHLSAAQWGWMA
YASLFGTALAYGLFFWFASRGDLTGFTSLTFLTPVFALASGLVLLGEQLEPLQWLGVVLALASVILINRRAELWQA
>Mature_396_residues
MDFLAIAHRAAGAVDAQQQHRELAFLHLAERFDHPLAGGSSDRASEADAGDAFTALAAQGPNHGAWCWSADPMQGEVPRL
NADLLAPLTLRLTWLAMLLPFALWGTAMAAMKPLLQEISPLTLAWLRILPAAVVLLLAAPLLQRPWQVDRRDWLWLLLFA
LVDGALFHGLLAEGLERTGAGLGSVLIDSQPLLVALLARSLLGEAINPIGWFGLLLGLSGILCLGLPAGALQHWWLDGPA
LDGSLLPGAGELLMLAAAAAMAGGTLLSRWACRHSDPVAITGWHLLLGGVPLLLLSLQGPLAVAGQHWPHLSAAQWGWMA
YASLFGTALAYGLFFWFASRGDLTGFTSLTFLTPVFALASGLVLLGEQLEPLQWLGVVLALASVILINRRAELWQA

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 42251; Mature: 42251

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFLAIAHRAAGAVDAQQQHRELAFLHLAERFDHPLAGGSSDRASEADAGDAFTALAAQG
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCC
PNHGAWCWSADPMQGEVPRLNADLLAPLTLRLTWLAMLLPFALWGTAMAAMKPLLQEISP
CCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
LTLAWLRILPAAVVLLLAAPLLQRPWQVDRRDWLWLLLFALVDGALFHGLLAEGLERTGA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GLGSVLIDSQPLLVALLARSLLGEAINPIGWFGLLLGLSGILCLGLPAGALQHWWLDGPA
CCCHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCC
LDGSLLPGAGELLMLAAAAAMAGGTLLSRWACRHSDPVAITGWHLLLGGVPLLLLSLQGP
CCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCCCCCEEEHHHHHHCCHHHHHHHCCCC
LAVAGQHWPHLSAAQWGWMAYASLFGTALAYGLFFWFASRGDLTGFTSLTFLTPVFALAS
CEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC
GLVLLGEQLEPLQWLGVVLALASVILINRRAELWQA
CHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHCC
>Mature Secondary Structure
MDFLAIAHRAAGAVDAQQQHRELAFLHLAERFDHPLAGGSSDRASEADAGDAFTALAAQG
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCC
PNHGAWCWSADPMQGEVPRLNADLLAPLTLRLTWLAMLLPFALWGTAMAAMKPLLQEISP
CCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
LTLAWLRILPAAVVLLLAAPLLQRPWQVDRRDWLWLLLFALVDGALFHGLLAEGLERTGA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GLGSVLIDSQPLLVALLARSLLGEAINPIGWFGLLLGLSGILCLGLPAGALQHWWLDGPA
CCCHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCC
LDGSLLPGAGELLMLAAAAAMAGGTLLSRWACRHSDPVAITGWHLLLGGVPLLLLSLQGP
CCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCCCCCEEEHHHHHHCCHHHHHHHCCCC
LAVAGQHWPHLSAAQWGWMAYASLFGTALAYGLFFWFASRGDLTGFTSLTFLTPVFALAS
CEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC
GLVLLGEQLEPLQWLGVVLALASVILINRRAELWQA
CHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]