| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
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The map label for this gene is 148241705
Identifier: 148241705
GI number: 148241705
Start: 540066
End: 541121
Strand: Direct
Name: 148241705
Synonym: SynRCC307_0606
Alternate gene names: NA
Gene position: 540066-541121 (Clockwise)
Preceding gene: 148241704
Following gene: 148241706
Centisome position: 24.27
GC content: 67.05
Gene sequence:
>1056_bases ATGTTGAGCCCCGATGCACCGGTGCTGCTGCTGCAGCACGGCGGCCTCTTTGATCTGTCCGGCAAAACGGGCCTGGCGTT TTTGCGCTACCGCCAGGGCCCTGTGGTGGCTGTGTTGGATCCAGGCCATGCCGGCGCTGATCTGCCCTTGCTCACCGGGA TCCCTCGTCCGGTGCCGGTGGTGGGGTCGGTGGCTGAGGCCATGGTCTATGGCCCCCAGGTGGCGGTGGTGGGCTTGGCG CCTTCCGGTGGTGTGCTGCCAGAGCCGGTCCGCCAATCGGTGCTGGAGGCGTTGCGCAGCGGCTTGAGTGTGGCCAGTGG TTTGCACACCCAGCTCGCGGCTGATCCGGAGTTGCAGGCTGCGGTGCAACCGGGCTCCTGGATTTGGGATCTGCGGCAGG AGCCGGCTGGCCTTGGTGTGGCCGCGGCGCGGGCAGCGTCTTTGCCCTGCCGGCGGATCTTGGCCGTAGGCACCGACATG TCGGTTGGGAAGATGAGTGCAGCCCTGGAGCTCACCGCTGCTGCACGCCAGCGCGGACTGGATGCCCGCTTTGTTGGCAC GGGTCAGGCCGGGATTTTGATTGCTGGCGGCGGCGTGCCGCTGGATGCGGTGCGGGTCGATTACGCCGCTGGCGCCGTTG AGCAGGCCGTGTTGCAGGTGGCTGAGGGGGCTGGTGAGGAGTCGATCGTCTTTGTGGAGGGCCAGGGCTCCTTTTGTCAT CCAGGCTCCACCGCCACGTTGCCGTTAATGCGCGGCAGCCAGGCCAATAGTTTGCTGTTGGTGCACCGCGCCGGGCAGCG CAGCATCCGCAACTTGCCGGAGATCGCCTTGCCGCCGCTGCCAGAGCTGATCGCGGTGGTGGAGGCGTTGGCGCGCCTAG GGCGGCCGCCGGGGCTCGCGCCCGCGCGGGTGAAGGCGATTGCCCTGAACACAGCACAACTGGATGACCGTCAGGCTGCA GCTGCCATCGAGCAAACAGCCCAAGACACGGGGTGTTGTTGCGCTGATCCTGTGCGTGGTGGAGCTGACCGTCTGCTGGA AGCGTTGCTCAGCTGA
Upstream 100 bases:
>100_bases TCGATTCCCATCTCAACTTGGCTGATGACCCCTTCTCTGGCCCGCTGGCCCAGGGGGATCTGCTGCAGCCCAGTAGCGGG GCTGGTTTGGGGGTGCGGCC
Downstream 100 bases:
>100_bases CCACGGAGAAGGGCGAGCGAGGGGATTCGAACCCCCGAATAGCGGCGCCACAAGCCGCTGCCTTAACCACTTGGCGACGC CCGCCGTGGAGACCAGAATC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 351; Mature: 351
Protein sequence:
>351_residues MLSPDAPVLLLQHGGLFDLSGKTGLAFLRYRQGPVVAVLDPGHAGADLPLLTGIPRPVPVVGSVAEAMVYGPQVAVVGLA PSGGVLPEPVRQSVLEALRSGLSVASGLHTQLAADPELQAAVQPGSWIWDLRQEPAGLGVAAARAASLPCRRILAVGTDM SVGKMSAALELTAAARQRGLDARFVGTGQAGILIAGGGVPLDAVRVDYAAGAVEQAVLQVAEGAGEESIVFVEGQGSFCH PGSTATLPLMRGSQANSLLLVHRAGQRSIRNLPEIALPPLPELIAVVEALARLGRPPGLAPARVKAIALNTAQLDDRQAA AAIEQTAQDTGCCCADPVRGGADRLLEALLS
Sequences:
>Translated_351_residues MLSPDAPVLLLQHGGLFDLSGKTGLAFLRYRQGPVVAVLDPGHAGADLPLLTGIPRPVPVVGSVAEAMVYGPQVAVVGLA PSGGVLPEPVRQSVLEALRSGLSVASGLHTQLAADPELQAAVQPGSWIWDLRQEPAGLGVAAARAASLPCRRILAVGTDM SVGKMSAALELTAAARQRGLDARFVGTGQAGILIAGGGVPLDAVRVDYAAGAVEQAVLQVAEGAGEESIVFVEGQGSFCH PGSTATLPLMRGSQANSLLLVHRAGQRSIRNLPEIALPPLPELIAVVEALARLGRPPGLAPARVKAIALNTAQLDDRQAA AAIEQTAQDTGCCCADPVRGGADRLLEALLS >Mature_351_residues MLSPDAPVLLLQHGGLFDLSGKTGLAFLRYRQGPVVAVLDPGHAGADLPLLTGIPRPVPVVGSVAEAMVYGPQVAVVGLA PSGGVLPEPVRQSVLEALRSGLSVASGLHTQLAADPELQAAVQPGSWIWDLRQEPAGLGVAAARAASLPCRRILAVGTDM SVGKMSAALELTAAARQRGLDARFVGTGQAGILIAGGGVPLDAVRVDYAAGAVEQAVLQVAEGAGEESIVFVEGQGSFCH PGSTATLPLMRGSQANSLLLVHRAGQRSIRNLPEIALPPLPELIAVVEALARLGRPPGLAPARVKAIALNTAQLDDRQAA AAIEQTAQDTGCCCADPVRGGADRLLEALLS
Specific function: Unknown
COG id: COG3367
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35789; Mature: 35789
Theoretical pI: Translated: 5.68; Mature: 5.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSPDAPVLLLQHGGLFDLSGKTGLAFLRYRQGPVVAVLDPGHAGADLPLLTGIPRPVPV CCCCCCCEEEEECCCEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCHHHCCCCCCCCH VGSVAEAMVYGPQVAVVGLAPSGGVLPEPVRQSVLEALRSGLSVASGLHTQLAADPELQA HHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHE AVQPGSWIWDLRQEPAGLGVAAARAASLPCRRILAVGTDMSVGKMSAALELTAAARQRGL EECCCCEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC DARFVGTGQAGILIAGGGVPLDAVRVDYAAGAVEQAVLQVAEGAGEESIVFVEGQGSFCH CEEEEECCCCCEEEECCCCCHHHEEEHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEC PGSTATLPLMRGSQANSLLLVHRAGQRSIRNLPEIALPPLPELIAVVEALARLGRPPGLA CCCCEEEEEECCCCCCCEEEEECCCHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC PARVKAIALNTAQLDDRQAAAAIEQTAQDTGCCCADPVRGGADRLLEALLS CHHEEEEEEECHHCCHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHC >Mature Secondary Structure MLSPDAPVLLLQHGGLFDLSGKTGLAFLRYRQGPVVAVLDPGHAGADLPLLTGIPRPVPV CCCCCCCEEEEECCCEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCHHHCCCCCCCCH VGSVAEAMVYGPQVAVVGLAPSGGVLPEPVRQSVLEALRSGLSVASGLHTQLAADPELQA HHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHE AVQPGSWIWDLRQEPAGLGVAAARAASLPCRRILAVGTDMSVGKMSAALELTAAARQRGL EECCCCEEEECCCCCCCCCHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC DARFVGTGQAGILIAGGGVPLDAVRVDYAAGAVEQAVLQVAEGAGEESIVFVEGQGSFCH CEEEEECCCCCEEEECCCCCHHHEEEHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEC PGSTATLPLMRGSQANSLLLVHRAGQRSIRNLPEIALPPLPELIAVVEALARLGRPPGLA CCCCEEEEEECCCCCCCEEEEECCCHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC PARVKAIALNTAQLDDRQAAAAIEQTAQDTGCCCADPVRGGADRLLEALLS CHHEEEEEEECHHCCHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA