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The map label for this gene is ycbY [C]

Identifier: 148241433

GI number: 148241433

Start: 322511

End: 323707

Strand: Direct

Name: ycbY [C]

Synonym: SynRCC307_0334

Alternate gene names: 148241433

Gene position: 322511-323707 (Clockwise)

Preceding gene: 148241430

Following gene: 148241436

Centisome position: 14.5

GC content: 64.83

Gene sequence:

>1197_bases
ATGCAGGATCAACTCTGGGATGTGATCGCCGTTGTGCCTGCTTCGCTCGAGGCAGAAGCTGCGGCAGAGCTTGAGGCTTT
CGGTGCCCAATCGCTGCAGACCCTGCGCCGTGCGGTGCGCTGCCGCCTGGATCGAGCGGGCTTTTACCGCGCCCATTTGC
AGGCCCGCTTGCCTTTTCAGCTGTTGCGGTTGCTCGCCAGCTTCCCCTGCTCCAGCCGCGCTCAGCTCTATGGCGGGGTG
CAGCAAGCGGCGGATTGGCAGGGCTGGTTGCCGCCGCAGCTCAGCTTCCGAGTTGAGGCCAGCGGCAGAGCTGGAGAGCT
CAACCACAGCCATTTCACGGCCTTGGAGGTCAAGAACGCCCTGGTGGATTGGCAGCGCCAGCACAGTGGCCAGCGCTCCG
ATGTGGATCTCGAGGATCCAGATCGGGTTTTTCATTTGCATCTCGGCCAAGGACGCCAGGGGCCCATGGCGTCGTTGTAT
GTGGCCGGTAGTTCCAGCAGCCTGCATCGCCGCGGCTACCGGGCGGCCATGGGCCTGGCGCCTTTGAAGGAAAACCTGGC
TGCAGGGTTGATGGCGATCACGGGCTGGGATGGCAGCGTGCCGCTGGTGGACCCCTTCTGCGGGTCTGCCACGTTGCTGA
TCGAGGCCGTCTCGCGCGTGCTGCAGCGTCCGCCGGGTTTGTTGCCTGGTGCTGCTTTGGAGCCGGCCCACCACGCCCAG
GCCCGCCGCTTCAGCTGCTTGCAATGGCCTGATGCTGATTTAGGCCTGTGGCGCTCGGAAGTGGTGGCCTCCGCTGAGCA
GGCTCTGGCTGGATCGCAGCAACCGTTGGCCCCGGTCATTGGCCTGGAGAAGGACCCTGAGGTGCTCGAGCAAGCCCGCA
GCAATGTGGCCGCGGCAGGCCTGGAGGCCTGGATCGATCTACGCCCAGGCGATGGTTGTGAGCTGATGCCTCCGCCTGGC
CCTGGGGTGCTGGTTTGCAATCCCCCCTATGGCGAGCGCCTGGGCGATGAGCAGGCGCTCGATGCCCTCTATCACCGCTT
TGGCCGGCAGCTCAAGGACCACTGCAGTGGTTGGAGTTTGTGGTTGCTGAGCGGCAACGCCAAGCTCACCCGCGCTCTGG
GGATGAAGGCCAGCCGGCGCGTGCCAGTGAGCAATGGCGGAATTGATTGCCGCTGGCTCCATTACGAGATTCGCTAG

Upstream 100 bases:

>100_bases
ATGGAGCTGAGCGGAATCGAACCGCTGTCCGAAACACTGGTTTGAGTCACCTAGTCCGGAAGGACCGGACTCCTTCATTG
TGGCAGCAGTGCCCGCTGCC

Downstream 100 bases:

>100_bases
CGCCCCAGCAGCGTGCGGGTGGTGCGGCTGATGCCCGCAGCTGTCTCGGGCAGGTAGGGGCCTTTCAGCAGTTGCCCGCC
GATGCGCAGCAGCAGCCCGG

Product: N6-adenine-specific DNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 398; Mature: 398

Protein sequence:

>398_residues
MQDQLWDVIAVVPASLEAEAAAELEAFGAQSLQTLRRAVRCRLDRAGFYRAHLQARLPFQLLRLLASFPCSSRAQLYGGV
QQAADWQGWLPPQLSFRVEASGRAGELNHSHFTALEVKNALVDWQRQHSGQRSDVDLEDPDRVFHLHLGQGRQGPMASLY
VAGSSSSLHRRGYRAAMGLAPLKENLAAGLMAITGWDGSVPLVDPFCGSATLLIEAVSRVLQRPPGLLPGAALEPAHHAQ
ARRFSCLQWPDADLGLWRSEVVASAEQALAGSQQPLAPVIGLEKDPEVLEQARSNVAAAGLEAWIDLRPGDGCELMPPPG
PGVLVCNPPYGERLGDEQALDALYHRFGRQLKDHCSGWSLWLLSGNAKLTRALGMKASRRVPVSNGGIDCRWLHYEIR

Sequences:

>Translated_398_residues
MQDQLWDVIAVVPASLEAEAAAELEAFGAQSLQTLRRAVRCRLDRAGFYRAHLQARLPFQLLRLLASFPCSSRAQLYGGV
QQAADWQGWLPPQLSFRVEASGRAGELNHSHFTALEVKNALVDWQRQHSGQRSDVDLEDPDRVFHLHLGQGRQGPMASLY
VAGSSSSLHRRGYRAAMGLAPLKENLAAGLMAITGWDGSVPLVDPFCGSATLLIEAVSRVLQRPPGLLPGAALEPAHHAQ
ARRFSCLQWPDADLGLWRSEVVASAEQALAGSQQPLAPVIGLEKDPEVLEQARSNVAAAGLEAWIDLRPGDGCELMPPPG
PGVLVCNPPYGERLGDEQALDALYHRFGRQLKDHCSGWSLWLLSGNAKLTRALGMKASRRVPVSNGGIDCRWLHYEIR
>Mature_398_residues
MQDQLWDVIAVVPASLEAEAAAELEAFGAQSLQTLRRAVRCRLDRAGFYRAHLQARLPFQLLRLLASFPCSSRAQLYGGV
QQAADWQGWLPPQLSFRVEASGRAGELNHSHFTALEVKNALVDWQRQHSGQRSDVDLEDPDRVFHLHLGQGRQGPMASLY
VAGSSSSLHRRGYRAAMGLAPLKENLAAGLMAITGWDGSVPLVDPFCGSATLLIEAVSRVLQRPPGLLPGAALEPAHHAQ
ARRFSCLQWPDADLGLWRSEVVASAEQALAGSQQPLAPVIGLEKDPEVLEQARSNVAAAGLEAWIDLRPGDGCELMPPPG
PGVLVCNPPYGERLGDEQALDALYHRFGRQLKDHCSGWSLWLLSGNAKLTRALGMKASRRVPVSNGGIDCRWLHYEIR

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=373, Percent_Identity=32.7077747989276, Blast_Score=180, Evalue=1e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR002296
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 43420; Mature: 43420

Theoretical pI: Translated: 7.12; Mature: 7.12

Prosite motif: PS51165 THUMP ; PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDQLWDVIAVVPASLEAEAAAELEAFGAQSLQTLRRAVRCRLDRAGFYRAHLQARLPFQ
CCCHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHH
LLRLLASFPCSSRAQLYGGVQQAADWQGWLPPQLSFRVEASGRAGELNHSHFTALEVKNA
HHHHHHHCCCCCCHHHHCCHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHH
LVDWQRQHSGQRSDVDLEDPDRVFHLHLGQGRQGPMASLYVAGSSSSLHRRGYRAAMGLA
HHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHCCH
PLKENLAAGLMAITGWDGSVPLVDPFCGSATLLIEAVSRVLQRPPGLLPGAALEPAHHAQ
HHHHHHHHCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
ARRFSCLQWPDADLGLWRSEVVASAEQALAGSQQPLAPVIGLEKDPEVLEQARSNVAAAG
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHC
LEAWIDLRPGDGCELMPPPGPGVLVCNPPYGERLGDEQALDALYHRFGRQLKDHCSGWSL
HHHEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEE
WLLSGNAKLTRALGMKASRRVPVSNGGIDCRWLHYEIR
EEEECCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEC
>Mature Secondary Structure
MQDQLWDVIAVVPASLEAEAAAELEAFGAQSLQTLRRAVRCRLDRAGFYRAHLQARLPFQ
CCCHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHH
LLRLLASFPCSSRAQLYGGVQQAADWQGWLPPQLSFRVEASGRAGELNHSHFTALEVKNA
HHHHHHHCCCCCCHHHHCCHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHH
LVDWQRQHSGQRSDVDLEDPDRVFHLHLGQGRQGPMASLYVAGSSSSLHRRGYRAAMGLA
HHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHCCH
PLKENLAAGLMAITGWDGSVPLVDPFCGSATLLIEAVSRVLQRPPGLLPGAALEPAHHAQ
HHHHHHHHCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
ARRFSCLQWPDADLGLWRSEVVASAEQALAGSQQPLAPVIGLEKDPEVLEQARSNVAAAG
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHC
LEAWIDLRPGDGCELMPPPGPGVLVCNPPYGERLGDEQALDALYHRFGRQLKDHCSGWSL
HHHEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEE
WLLSGNAKLTRALGMKASRRVPVSNGGIDCRWLHYEIR
EEEECCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]