| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
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The map label for this gene is 148241375
Identifier: 148241375
GI number: 148241375
Start: 277687
End: 278133
Strand: Direct
Name: 148241375
Synonym: SynRCC307_0276
Alternate gene names: NA
Gene position: 277687-278133 (Clockwise)
Preceding gene: 148241374
Following gene: 148241376
Centisome position: 12.48
GC content: 62.42
Gene sequence:
>447_bases ATGGGCCGCTGGCTTGAGCACAGTGTTGCGGTGGATATTGCCGCGCCCGTGGATCTGGTGTGGGCGGTGTGGAGTGATCT CGAATCCATGCCGCTGTGGATGCGCTGGATCGAATCGGTAAAGACGCTCGATGACCCCGACCTCACTGAATGGACCCTGG CGGCCCAGGGCTTTCGCTTCCAGTGGAAGGCCCGCATCACCCAGCGGGTGGAGGCCCAGCAATTGCATTGGCAATCCGTC GGCGGCCTTCCCACCAAAGGCGCCGTGCGCTTCTACCCAGAAGCCGATGAGCGCACGGCGGTGAAGCTCACCGTGAGCTA CGAGCTGCCAGGGGTGCTGGCGCCCTTGATGGATCCCAAGATCCTGGGCGGTTTGGTCAGCAAGGAGTTGCAGGCCAATC TCGATCGTTTTCAAGAACTGGTGGAAGAGCGGGCCCGCGCTCGATAG
Upstream 100 bases:
>100_bases GGTAGTTACACCCGCCAGGACTACATCGATTCGATGGAAGGGGCCACCATGAGCGGGCGTCTGGCCGCCAAGGCCATCCT CAACGGCGCAGGAGGCTGAG
Downstream 100 bases:
>100_bases GGTTCGGCCACTTGCTGATGGGCTGCTGGCCTGCCGCGCTGCTGCCGCTGCTGTTGTTGCCGCTGTGATGCTGTCGGCCT GTGGCGCCCAGACGCCTCCT
Product: hypothetical protein
Products: NA
Alternate protein names: ORF3 [H]
Number of amino acids: Translated: 148; Mature: 147
Protein sequence:
>148_residues MGRWLEHSVAVDIAAPVDLVWAVWSDLESMPLWMRWIESVKTLDDPDLTEWTLAAQGFRFQWKARITQRVEAQQLHWQSV GGLPTKGAVRFYPEADERTAVKLTVSYELPGVLAPLMDPKILGGLVSKELQANLDRFQELVEERARAR
Sequences:
>Translated_148_residues MGRWLEHSVAVDIAAPVDLVWAVWSDLESMPLWMRWIESVKTLDDPDLTEWTLAAQGFRFQWKARITQRVEAQQLHWQSV GGLPTKGAVRFYPEADERTAVKLTVSYELPGVLAPLMDPKILGGLVSKELQANLDRFQELVEERARAR >Mature_147_residues GRWLEHSVAVDIAAPVDLVWAVWSDLESMPLWMRWIESVKTLDDPDLTEWTLAAQGFRFQWKARITQRVEAQQLHWQSVG GLPTKGAVRFYPEADERTAVKLTVSYELPGVLAPLMDPKILGGLVSKELQANLDRFQELVEERARAR
Specific function: Unknown
COG id: COG5637
COG function: function code S; Predicted integral membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005031 [H]
Pfam domain/function: PF03364 Polyketide_cyc [H]
EC number: NA
Molecular weight: Translated: 16928; Mature: 16796
Theoretical pI: Translated: 5.00; Mature: 5.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRWLEHSVAVDIAAPVDLVWAVWSDLESMPLWMRWIESVKTLDDPDLTEWTLAAQGFRF CCCCCCHHHEEEHHCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHCCCCC QWKARITQRVEAQQLHWQSVGGLPTKGAVRFYPEADERTAVKLTVSYELPGVLAPLMDPK HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEEEEEEECCCCHHHHHCCHH ILGGLVSKELQANLDRFQELVEERARAR HHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure GRWLEHSVAVDIAAPVDLVWAVWSDLESMPLWMRWIESVKTLDDPDLTEWTLAAQGFRF CCCCCHHHEEEHHCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHCCCCC QWKARITQRVEAQQLHWQSVGGLPTKGAVRFYPEADERTAVKLTVSYELPGVLAPLMDPK HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEEEEEEECCCCHHHHHCCHH ILGGLVSKELQANLDRFQELVEERARAR HHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA