| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
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The map label for this gene is glmS [H]
Identifier: 148241233
GI number: 148241233
Start: 129094
End: 130980
Strand: Direct
Name: glmS [H]
Synonym: SynRCC307_0134
Alternate gene names: 148241233
Gene position: 129094-130980 (Clockwise)
Preceding gene: 148241232
Following gene: 148241235
Centisome position: 5.8
GC content: 61.79
Gene sequence:
>1887_bases ATGTGCGGCATCGTTGCGGTCATTGGCACCCGTGATGCAGCTCCATTGCTTCTGGATGGCCTGCGGCAACTGGAGTATCG CGGCTACGACTCAGCAGGAATCGCCACGGTTCATGGCGGTCATCTGAGCCACCTGCGCGCTGAAGGCAAACTCATCAATC TCACCCAGCGTTTTGAAGCCAGTGGCGCTGCAGGATCTTGCGGCATTGGCCACACCCGTTGGGCCACCCACGGCAAGCCT GAGGAGCGCAACGCCCACCCCCACCTGGATGGTTCAGGTGAGTTGGCGGTGGTTCAAAACGGCATCATCGAAAACCACCG CAGCCTCAGAGAGCGATTGGCAGCAGGCGGGGCCGCCTTTCAATCCGATACCGACACTGAGGTCATTCCTCACCTCGTTT CACAAGAGTTGAAAGGTCTGCTAGCGGCAGGATCACCCGCTGATGGCGCCACCTTGCTCAAGGCCGTTCAACAGGCCTTG CCTCAGCTCGATGGTGCCTACGCGTTGGCTGTGGTTTGGGCCCAGTGCCCCGATGCCTTGGTCGTAGCTCGCCGGCAGGC CCCCTTGTTGATCGGCTTTGGTGAAGGTGAATTTCTTTGCGCCAGCGACACACCCGCGCTGGCAGGTGTGACTCGCACCA TCCTTCCCTTGGAAGATGGGGAAGTGGCCCTCTTGGGGCCTTTGGGCATTGAGCTCTACAACGAAGCCGGTGAGCGGCAG CAGCGACCGCCAACCCAGTTGCAGGGCACCGACCACGTGGCGGACAAGCGCAGCTTCCGCCACTTCATGCTCAAGGAGAT CCATGAGCAGCCCGAAACCGCCGCCCGTTGGTTGCTGCGCCATTTGCCGGAGGGCGGCCCTAATGACCCCTTGGTGGCGT TGCCGCTTGAGCGCAGCCTGCTCGAGGGTGTGCAGCGCATCCAGATCTTGGCTTGCGGCACCAGCCGCCACGCTGCGCTG GTGGGAGCCCATTTGCTAGAGCAGCTTGCTGGAATTCCCACCAGCGTTCATTACGCCAGTGAGTTCCGCTACTCACCGCC CCCGCTGGCGCCCCACACCCTCACCATTGGCGTGACCCAGTCGGGAGAGACCGCCGACACCTTGGCTGCTTTGGCGATGG AGCAGCAGCGTTGCGCTGACCATGGCGATCCCGCTTACGCAGCGCGCCTGCTAGGCATCACCAACCGCACCGAAAGCTCC TTGGGCCGCTTGGTGCCCCAACTCATCGACATCGCTGCGGGCGTTGAAGTGGGTGTTGCGGCGACTAAAACCTTCCTTGG ACAGCTTCTGGCCTTCTATGGCTTGGCCATCCAGCTCACGGATTTGCGTGGTGCGCGATCCCGTGAGCAACTCCATCCTC TGTTGGCTGAATTGCGGGCGCTTCCGGCGCAGCTGCAGACCTTGATTGACCGGCTCGACCTGCGTTGCGCAGAGCTGGCC CATGCCTTTGCCGACACACGCACCGTCATCTATTTAGGCCGCGGCATCAACTACCCCATCGCATTGGAAGGCGCCCTCAA GCTGAAAGAGATCAGCTACATCCACGCCGAGGGGTATCCCGCCGGTGAGATGAAGCATGGCCCGATTGCCTTGCTCGACG CTGATGTGCCCGTGGTGAGTGTTGCCATGCCTGGGCCGGTGTTCGACAAGGTGCTCAGCAATGCCCAAGAAGCCAAGGCC AGAGATGCGCGCCTGATTGGGGTGGCCCCGGAATGCCCCGACACAGAGATCTTCGATGAGTTGCTGCCTGTGCCAGCAGT CGATGAGTTGCTCTCGCCGCTGCTCACCCTGATTCCGATGCAGCTGCTCAGCTATCACATCGCCGCGAGGCGCGGCCTTG ATGTGGATCAACCCCGCAACTTGGCCAAGAGCGTCACGGTGGAGTGA
Upstream 100 bases:
>100_bases CCACCCGCTCGATGGGTCTGGCTTACTGATTTCAAGGGCTTTCATCCCTATGCTCTGCCCGGCCCTGCCGGGCTTTTTTG TTGATCAGGAGTAGGAGCGG
Downstream 100 bases:
>100_bases GCCTTGGGCTCAGCCATCCAGCAGTCCTTTGGGGGGAGTGATCAGTAGCCAGCCCTCTTCCAGTTCCACCTGAGGAACGA TCGCGTCGACAAAGGGAACG
Product: glucosamine--fructose-6-phosphate aminotransferase
Products: NA
Alternate protein names: D-fructose-6-phosphate amidotransferase; GFAT; Glucosamine-6-phosphate synthase; Hexosephosphate aminotransferase; L-glutamine-D-fructose-6-phosphate amidotransferase [H]
Number of amino acids: Translated: 628; Mature: 628
Protein sequence:
>628_residues MCGIVAVIGTRDAAPLLLDGLRQLEYRGYDSAGIATVHGGHLSHLRAEGKLINLTQRFEASGAAGSCGIGHTRWATHGKP EERNAHPHLDGSGELAVVQNGIIENHRSLRERLAAGGAAFQSDTDTEVIPHLVSQELKGLLAAGSPADGATLLKAVQQAL PQLDGAYALAVVWAQCPDALVVARRQAPLLIGFGEGEFLCASDTPALAGVTRTILPLEDGEVALLGPLGIELYNEAGERQ QRPPTQLQGTDHVADKRSFRHFMLKEIHEQPETAARWLLRHLPEGGPNDPLVALPLERSLLEGVQRIQILACGTSRHAAL VGAHLLEQLAGIPTSVHYASEFRYSPPPLAPHTLTIGVTQSGETADTLAALAMEQQRCADHGDPAYAARLLGITNRTESS LGRLVPQLIDIAAGVEVGVAATKTFLGQLLAFYGLAIQLTDLRGARSREQLHPLLAELRALPAQLQTLIDRLDLRCAELA HAFADTRTVIYLGRGINYPIALEGALKLKEISYIHAEGYPAGEMKHGPIALLDADVPVVSVAMPGPVFDKVLSNAQEAKA RDARLIGVAPECPDTEIFDELLPVPAVDELLSPLLTLIPMQLLSYHIAARRGLDVDQPRNLAKSVTVE
Sequences:
>Translated_628_residues MCGIVAVIGTRDAAPLLLDGLRQLEYRGYDSAGIATVHGGHLSHLRAEGKLINLTQRFEASGAAGSCGIGHTRWATHGKP EERNAHPHLDGSGELAVVQNGIIENHRSLRERLAAGGAAFQSDTDTEVIPHLVSQELKGLLAAGSPADGATLLKAVQQAL PQLDGAYALAVVWAQCPDALVVARRQAPLLIGFGEGEFLCASDTPALAGVTRTILPLEDGEVALLGPLGIELYNEAGERQ QRPPTQLQGTDHVADKRSFRHFMLKEIHEQPETAARWLLRHLPEGGPNDPLVALPLERSLLEGVQRIQILACGTSRHAAL VGAHLLEQLAGIPTSVHYASEFRYSPPPLAPHTLTIGVTQSGETADTLAALAMEQQRCADHGDPAYAARLLGITNRTESS LGRLVPQLIDIAAGVEVGVAATKTFLGQLLAFYGLAIQLTDLRGARSREQLHPLLAELRALPAQLQTLIDRLDLRCAELA HAFADTRTVIYLGRGINYPIALEGALKLKEISYIHAEGYPAGEMKHGPIALLDADVPVVSVAMPGPVFDKVLSNAQEAKA RDARLIGVAPECPDTEIFDELLPVPAVDELLSPLLTLIPMQLLSYHIAARRGLDVDQPRNLAKSVTVE >Mature_628_residues MCGIVAVIGTRDAAPLLLDGLRQLEYRGYDSAGIATVHGGHLSHLRAEGKLINLTQRFEASGAAGSCGIGHTRWATHGKP EERNAHPHLDGSGELAVVQNGIIENHRSLRERLAAGGAAFQSDTDTEVIPHLVSQELKGLLAAGSPADGATLLKAVQQAL PQLDGAYALAVVWAQCPDALVVARRQAPLLIGFGEGEFLCASDTPALAGVTRTILPLEDGEVALLGPLGIELYNEAGERQ QRPPTQLQGTDHVADKRSFRHFMLKEIHEQPETAARWLLRHLPEGGPNDPLVALPLERSLLEGVQRIQILACGTSRHAAL VGAHLLEQLAGIPTSVHYASEFRYSPPPLAPHTLTIGVTQSGETADTLAALAMEQQRCADHGDPAYAARLLGITNRTESS LGRLVPQLIDIAAGVEVGVAATKTFLGQLLAFYGLAIQLTDLRGARSREQLHPLLAELRALPAQLQTLIDRLDLRCAELA HAFADTRTVIYLGRGINYPIALEGALKLKEISYIHAEGYPAGEMKHGPIALLDADVPVVSVAMPGPVFDKVLSNAQEAKA RDARLIGVAPECPDTEIFDELLPVPAVDELLSPLLTLIPMQLLSYHIAARRGLDVDQPRNLAKSVTVE
Specific function: Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source [H]
COG id: COG0449
COG function: function code M; Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 SIS domains [H]
Homologues:
Organism=Homo sapiens, GI4826742, Length=700, Percent_Identity=33.7142857142857, Blast_Score=341, Evalue=1e-93, Organism=Homo sapiens, GI205277386, Length=699, Percent_Identity=33.0472103004292, Blast_Score=324, Evalue=2e-88, Organism=Escherichia coli, GI1790167, Length=638, Percent_Identity=45.2978056426332, Blast_Score=488, Evalue=1e-139, Organism=Escherichia coli, GI1788651, Length=218, Percent_Identity=26.605504587156, Blast_Score=67, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17539970, Length=445, Percent_Identity=36.1797752808989, Blast_Score=239, Evalue=3e-63, Organism=Caenorhabditis elegans, GI17532899, Length=448, Percent_Identity=36.3839285714286, Blast_Score=236, Evalue=2e-62, Organism=Caenorhabditis elegans, GI17532897, Length=448, Percent_Identity=36.3839285714286, Blast_Score=236, Evalue=2e-62, Organism=Saccharomyces cerevisiae, GI6322745, Length=442, Percent_Identity=35.2941176470588, Blast_Score=239, Evalue=1e-63, Organism=Saccharomyces cerevisiae, GI6323731, Length=442, Percent_Identity=27.6018099547511, Blast_Score=143, Evalue=7e-35, Organism=Saccharomyces cerevisiae, GI6323730, Length=211, Percent_Identity=37.914691943128, Blast_Score=120, Evalue=5e-28, Organism=Drosophila melanogaster, GI21357745, Length=709, Percent_Identity=33.9915373765867, Blast_Score=344, Evalue=1e-94,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000583 - InterPro: IPR017932 - InterPro: IPR005855 - InterPro: IPR001347 [H]
Pfam domain/function: PF00310 GATase_2; PF01380 SIS [H]
EC number: =2.6.1.16 [H]
Molecular weight: Translated: 67186; Mature: 67186
Theoretical pI: Translated: 5.84; Mature: 5.84
Prosite motif: PS00443 GATASE_TYPE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCGIVAVIGTRDAAPLLLDGLRQLEYRGYDSAGIATVHGGHLSHLRAEGKLINLTQRFEA CCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHCCCEEEHHHHHCC SGAAGSCGIGHTRWATHGKPEERNAHPHLDGSGELAVVQNGIIENHRSLRERLAAGGAAF CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCC QSDTDTEVIPHLVSQELKGLLAAGSPADGATLLKAVQQALPQLDGAYALAVVWAQCPDAL CCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHEEHHHHHHCCCHH VVARRQAPLLIGFGEGEFLCASDTPALAGVTRTILPLEDGEVALLGPLGIELYNEAGERQ HHHHCCCCEEEEECCCCEEECCCCCCHHHHHHEEEECCCCCEEEECCCCHHHHHHHHHHC QRPPTQLQGTDHVADKRSFRHFMLKEIHEQPETAARWLLRHLPEGGPNDPLVALPLERSL CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCEEEECCHHHH LEGVQRIQILACGTSRHAALVGAHLLEQLAGIPTSVHYASEFRYSPPPLAPHTLTIGVTQ HHHHHHEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEHHHHCCCCCCCCCCCEEEEEEEC SGETADTLAALAMEQQRCADHGDPAYAARLLGITNRTESSLGRLVPQLIDIAAGVEVGVA CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHH ATKTFLGQLLAFYGLAIQLTDLRGARSREQLHPLLAELRALPAQLQTLIDRLDLRCAELA HHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HAFADTRTVIYLGRGINYPIALEGALKLKEISYIHAEGYPAGEMKHGPIALLDADVPVVS HHHHCCCEEEEEECCCCCCEEECCCEEEHHEEEEECCCCCCCCCCCCCEEEEECCCCEEE VAMPGPVFDKVLSNAQEAKARDARLIGVAPECPDTEIFDELLPVPAVDELLSPLLTLIPM EECCCHHHHHHHCCHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHH QLLSYHIAARRGLDVDQPRNLAKSVTVE HHHHHHHHHHCCCCCCCCHHHHHHCCCC >Mature Secondary Structure MCGIVAVIGTRDAAPLLLDGLRQLEYRGYDSAGIATVHGGHLSHLRAEGKLINLTQRFEA CCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHCCCEEEHHHHHCC SGAAGSCGIGHTRWATHGKPEERNAHPHLDGSGELAVVQNGIIENHRSLRERLAAGGAAF CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCC QSDTDTEVIPHLVSQELKGLLAAGSPADGATLLKAVQQALPQLDGAYALAVVWAQCPDAL CCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHEEHHHHHHCCCHH VVARRQAPLLIGFGEGEFLCASDTPALAGVTRTILPLEDGEVALLGPLGIELYNEAGERQ HHHHCCCCEEEEECCCCEEECCCCCCHHHHHHEEEECCCCCEEEECCCCHHHHHHHHHHC QRPPTQLQGTDHVADKRSFRHFMLKEIHEQPETAARWLLRHLPEGGPNDPLVALPLERSL CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCEEEECCHHHH LEGVQRIQILACGTSRHAALVGAHLLEQLAGIPTSVHYASEFRYSPPPLAPHTLTIGVTQ HHHHHHEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEHHHHCCCCCCCCCCCEEEEEEEC SGETADTLAALAMEQQRCADHGDPAYAARLLGITNRTESSLGRLVPQLIDIAAGVEVGVA CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHH ATKTFLGQLLAFYGLAIQLTDLRGARSREQLHPLLAELRALPAQLQTLIDRLDLRCAELA HHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HAFADTRTVIYLGRGINYPIALEGALKLKEISYIHAEGYPAGEMKHGPIALLDADVPVVS HHHHCCCEEEEEECCCCCCEEECCCEEEHHEEEEECCCCCCCCCCCCCEEEEECCCCEEE VAMPGPVFDKVLSNAQEAKARDARLIGVAPECPDTEIFDELLPVPAVDELLSPLLTLIPM EECCCHHHHHHHCCHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHH QLLSYHIAARRGLDVDQPRNLAKSVTVE HHHHHHHHHHCCCCCCCCHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12240834 [H]