Click here to switch to the map view.

The map label for this gene is ybbH [H]

Identifier: 147675662

GI number: 147675662

Start: 1478334

End: 1479170

Strand: Reverse

Name: ybbH [H]

Synonym: VC0395_A1373

Alternate gene names: 147675662

Gene position: 1479170-1478334 (Counterclockwise)

Preceding gene: 147675305

Following gene: 147673747

Centisome position: 48.91

GC content: 43.61

Gene sequence:

>837_bases
GTGAATTTGCCTAAAAATCTGATGGTTCGATTGCGCTCGAATACCGAACCTTTGAGCAAAAAACTCAGAGTTGTTGCTGA
TTATGTGCTCGAAAATGCACATGAAGTTCAGTATCAGACGATCACCGATCTAGCGTTTAATACAAAAACAAGCGAAGCCA
CTGTAGTCAGGCTATGCCGTGATTTGGGCTACAAAGGTTATTCGGATTTTAGAATGGCATTGGCGGTTGATCTTAGTCAG
TCTGCAAACCAATCTCAGCCCAAAATGGATGGCGATATTTGCGAAGTTTCTGCGCAAAGCGCGGTAGATAGTTTAATGGA
TACTGCAAAACTGATAGACAGAGCTGCCTTAAATAGAATATGTGAGTTGGTTCATGGGGCTAAGTTTATTGGGTGTGTTG
GTGTGGGAGCATCCAGTATCGTCGGTCGCTATTTGGCGTACCGATTAGTGAGAATAGGTAAAAAAGCCATCATGTATGAA
GATACACACTTGGCGGCAATGAGTGCTGGACAGAGTGTTGTCGGGGATGCATGGTTTGCAATATCGAGCTCAGGTTCTAC
AAAAGAGGTGGTTCATGCGGCCACCCAGGCTCATCAACGCGGTGTGCCAGTTGTATCTCTTACGAATATTAGCCATAGCC
CACTTTCTTCGATTTCAGATGAAATGTTAGTGGCTGCAAGGCCTGAAGGCCCTCTCACTGGCGGTGCTTTTTCTTCTAAA
GTTGGTGCTTTGTTGCTTGTTGATGTTTTGATTAACACACTTTTAGATGTATATCCTGAATATTCAGCCTCCGTATTTGG
TACTGCGGAAGTGATTTTACCTTTAATGGATAGTTAA

Upstream 100 bases:

>100_bases
CCCTAAAAGAAGATTTAAGAACAAATTATCATGATGATGTATTAATAGATCTAGGTCTTTGGTACTTTTATGGTAGTCAA
AAGAATATTAAGGACTCCAA

Downstream 100 bases:

>100_bases
GCAGTATTTAACAAGTTTGAAACCCATCAGGATATCGATGGGTTTTTTTAGCGCATTTAGTGAAGATAATTTTTACTTTT
ATTAATGGTGAAGAAATTAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MNLPKNLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCRDLGYKGYSDFRMALAVDLSQ
SANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRICELVHGAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYE
DTHLAAMSAGQSVVGDAWFAISSSGSTKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSK
VGALLLVDVLINTLLDVYPEYSASVFGTAEVILPLMDS

Sequences:

>Translated_278_residues
MNLPKNLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCRDLGYKGYSDFRMALAVDLSQ
SANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRICELVHGAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYE
DTHLAAMSAGQSVVGDAWFAISSSGSTKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSK
VGALLLVDVLINTLLDVYPEYSASVFGTAEVILPLMDS
>Mature_278_residues
MNLPKNLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCRDLGYKGYSDFRMALAVDLSQ
SANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRICELVHGAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYE
DTHLAAMSAGQSVVGDAWFAISSSGSTKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSK
VGALLLVDVLINTLLDVYPEYSASVFGTAEVILPLMDS

Specific function: Unknown

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1788767, Length=239, Percent_Identity=29.2887029288703, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI87082369, Length=246, Percent_Identity=24.7967479674797, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1788159, Length=254, Percent_Identity=27.5590551181102, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI87082130, Length=268, Percent_Identity=25, Blast_Score=76, Evalue=3e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 29827; Mature: 29827

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS51071 HTH_RPIR ; PS00107 PROTEIN_KINASE_ATP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLPKNLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCR
CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
DLGYKGYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRI
HCCCCCCHHHHHHHEEECHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CELVHGAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFA
HHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHEEECCCHHHHHHCCCHHHCCCEEE
ISSSGSTKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSK
EECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHCCCEEEEECCCCCCCCCCHHHH
VGALLLVDVLINTLLDVYPEYSASVFGTAEVILPLMDS
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNLPKNLMVRLRSNTEPLSKKLRVVADYVLENAHEVQYQTITDLAFNTKTSEATVVRLCR
CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
DLGYKGYSDFRMALAVDLSQSANQSQPKMDGDICEVSAQSAVDSLMDTAKLIDRAALNRI
HCCCCCCHHHHHHHEEECHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CELVHGAKFIGCVGVGASSIVGRYLAYRLVRIGKKAIMYEDTHLAAMSAGQSVVGDAWFA
HHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHEEECCCHHHHHHCCCHHHCCCEEE
ISSSGSTKEVVHAATQAHQRGVPVVSLTNISHSPLSSISDEMLVAARPEGPLTGGAFSSK
EECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHCCCEEEEECCCCCCCCCCHHHH
VGALLLVDVLINTLLDVYPEYSASVFGTAEVILPLMDS
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274029; 9384377 [H]