Click here to switch to the map view.

The map label for this gene is mdoD

Identifier: 147675383

GI number: 147675383

Start: 923029

End: 924666

Strand: Reverse

Name: mdoD

Synonym: VC0395_A0907

Alternate gene names: 147675383

Gene position: 924666-923029 (Counterclockwise)

Preceding gene: 147673833

Following gene: 147675546

Centisome position: 30.58

GC content: 48.41

Gene sequence:

>1638_bases
ATGATTCGTGTGTCCAGCGCCGTGCAACGTCATGCGCAAAAACTGATTGTACTTTTCTCCCTGCTGTTTGGGGCTTCTTT
GCTGATGTCTGATAATGGTTTTGCTACAGACATTAAAAATACTAATGCCTCTTCTCCAGTGAATTCAGAGTCTACTAAGC
CAACAAAAGCTGGCGAAGTTAAAAATGTGGTTCGCTTTGCCAAAACGGGATCGTTTGATAACGACACCGTTGTTCGCCTA
GCTCGCCAACTGGCGAAAAAGCCTTATGTTGCCTTAAAAGATCCGCTACCAGAGAGTTTGGCCAATATCAGTTATGATGA
GTACCGCGATATTCGTTTTAAACCCGACAGTGCAGTGTGGAAAGCAGATGGCCTACCATATCAAATGCAACTATTCCATC
GCGGTTTCTTCTTCCAAGATCTGATTGAAATTGCACTTGTTGAAGGCAACCAAGCCACTCACCTAAGTTACGACCCCAAT
ATGTTCACCGCTGGCGAAGTTCTACAACAGAACCTGCCGACTGAAGATATTGGTTATAGTGGTCTTCGTGTGCATTACCC
TCTCAACAGCCCATCCTATTTTGATGAACTGTTTGTATTCCAAGGAGCAAGCTACTTCCGTGCTCTGGGTAAAGGCAATG
CGTATGGCTTGTCTGCGCGTGGCTTGGCCATCAAAACTGCCGATCCAGCGGGTGAAGAGTTCCCTATTTTCCGTGCCTTC
TGGGTGGAAAAACCAAACTACGACACCAACTTGATTGTGGTCCATGCCCTACTGGATAGCCCAAGCGTGTCTGGTGCGTA
TCGTTTCTCTATTCGTCCAGGAGAAAATACTCGTATGGACGTTGAGGCGGTACTCTTCCCACGCGTGGAGTTAAGCAAAG
TTGGTCTAGCTCCGGCAACCAGTATGTTCATGCATTCGCCAAATGGCCGTGAGAAGACCGATGATTTCCGTCCTTCTGTG
CATGATTCTGATGGTTTATTGATGATCAACGGACGTGGTGAACGTTTGTGGCGTCCATTGGCTAACCCTAGCACACTGCA
AGTGAGCGCCTTTATGGACAACTCACCGCAAGGCTTTGGTTTGATGCAGCGTGAGCGCGATTACGCCAACTACCAAGATT
TGGAAGCCCATTACGAAAAACGTCCAAGTCTGTGGGTTGAACCGGTCGGTAACTGGGGTCCTGGTGCTGTCGTGTTGACA
GAAATTCCAACTCAATCAGAAATTCACGACAACATTGTCGCCTTCTGGAAGCCAGCACAACCTCTTGCAGCAGGCAGTGA
ATATCGTTTCTCTTATCACCTCAACTGGGGTGCGCAACCAGAAGCGAATCCACAAGCGATCACTGTAAGCCGTACTGCGA
GTGGACGTGCCGATATTGCCAAACCAACGCCAAAACGTTTGTTCGTGATTGATTACCAAGTCCAAGGTGCCAAGCCTGCA
CAGATGCCAGAACCGAAAGTGCGCAGCAATGCTGGGGTAATCAGTAACGTTGTACTGCGTGATAACCCTGCCAATAATGG
CTATCGCCTCTCATTTGAATTTGATCCAGGCGAAGTGACGCTGGCTGAACTACGGGCAGAGCTCACTTTGCAAGAAGCGC
GTCCTGTAGAAACTTGGTTGTATCGTTGGACCCTGTAG

Upstream 100 bases:

>100_bases
AATGAGACCTGCAATTTCCTGCGATACCGTCCGGTCAGCAAAATTGCAGTAAACTCTTAAGCTATCTTCGTATTTCACTT
TGTTATCGGTTCATTTCTAT

Downstream 100 bases:

>100_bases
TAAGTACTCGGATTTTTTATGACAAACCCAATGGTTGAACAAGGAGCCTCCCAGTTAATGGGAGGCTCTGCCATGCCACC
AGAACAACACGGCGAAATGC

Product: glucan biosynthesis protein D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 545; Mature: 545

Protein sequence:

>545_residues
MIRVSSAVQRHAQKLIVLFSLLFGASLLMSDNGFATDIKNTNASSPVNSESTKPTKAGEVKNVVRFAKTGSFDNDTVVRL
ARQLAKKPYVALKDPLPESLANISYDEYRDIRFKPDSAVWKADGLPYQMQLFHRGFFFQDLIEIALVEGNQATHLSYDPN
MFTAGEVLQQNLPTEDIGYSGLRVHYPLNSPSYFDELFVFQGASYFRALGKGNAYGLSARGLAIKTADPAGEEFPIFRAF
WVEKPNYDTNLIVVHALLDSPSVSGAYRFSIRPGENTRMDVEAVLFPRVELSKVGLAPATSMFMHSPNGREKTDDFRPSV
HDSDGLLMINGRGERLWRPLANPSTLQVSAFMDNSPQGFGLMQRERDYANYQDLEAHYEKRPSLWVEPVGNWGPGAVVLT
EIPTQSEIHDNIVAFWKPAQPLAAGSEYRFSYHLNWGAQPEANPQAITVSRTASGRADIAKPTPKRLFVIDYQVQGAKPA
QMPEPKVRSNAGVISNVVLRDNPANNGYRLSFEFDPGEVTLAELRAELTLQEARPVETWLYRWTL

Sequences:

>Translated_545_residues
MIRVSSAVQRHAQKLIVLFSLLFGASLLMSDNGFATDIKNTNASSPVNSESTKPTKAGEVKNVVRFAKTGSFDNDTVVRL
ARQLAKKPYVALKDPLPESLANISYDEYRDIRFKPDSAVWKADGLPYQMQLFHRGFFFQDLIEIALVEGNQATHLSYDPN
MFTAGEVLQQNLPTEDIGYSGLRVHYPLNSPSYFDELFVFQGASYFRALGKGNAYGLSARGLAIKTADPAGEEFPIFRAF
WVEKPNYDTNLIVVHALLDSPSVSGAYRFSIRPGENTRMDVEAVLFPRVELSKVGLAPATSMFMHSPNGREKTDDFRPSV
HDSDGLLMINGRGERLWRPLANPSTLQVSAFMDNSPQGFGLMQRERDYANYQDLEAHYEKRPSLWVEPVGNWGPGAVVLT
EIPTQSEIHDNIVAFWKPAQPLAAGSEYRFSYHLNWGAQPEANPQAITVSRTASGRADIAKPTPKRLFVIDYQVQGAKPA
QMPEPKVRSNAGVISNVVLRDNPANNGYRLSFEFDPGEVTLAELRAELTLQEARPVETWLYRWTL
>Mature_545_residues
MIRVSSAVQRHAQKLIVLFSLLFGASLLMSDNGFATDIKNTNASSPVNSESTKPTKAGEVKNVVRFAKTGSFDNDTVVRL
ARQLAKKPYVALKDPLPESLANISYDEYRDIRFKPDSAVWKADGLPYQMQLFHRGFFFQDLIEIALVEGNQATHLSYDPN
MFTAGEVLQQNLPTEDIGYSGLRVHYPLNSPSYFDELFVFQGASYFRALGKGNAYGLSARGLAIKTADPAGEEFPIFRAF
WVEKPNYDTNLIVVHALLDSPSVSGAYRFSIRPGENTRMDVEAVLFPRVELSKVGLAPATSMFMHSPNGREKTDDFRPSV
HDSDGLLMINGRGERLWRPLANPSTLQVSAFMDNSPQGFGLMQRERDYANYQDLEAHYEKRPSLWVEPVGNWGPGAVVLT
EIPTQSEIHDNIVAFWKPAQPLAAGSEYRFSYHLNWGAQPEANPQAITVSRTASGRADIAKPTPKRLFVIDYQVQGAKPA
QMPEPKVRSNAGVISNVVLRDNPANNGYRLSFEFDPGEVTLAELRAELTLQEARPVETWLYRWTL

Specific function: Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)

COG id: COG3131

COG function: function code P; Periplasmic glucans biosynthesis protein

Gene ontology:

Cell location: Periplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the opgD/opgG family

Homologues:

Organism=Escherichia coli, GI1787286, Length=488, Percent_Identity=38.5245901639344, Blast_Score=357, Evalue=1e-99,
Organism=Escherichia coli, GI145693128, Length=501, Percent_Identity=36.5269461077844, Blast_Score=301, Evalue=9e-83,

Paralogues:

None

Copy number: 280 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): OPGG_VIBC3 (A5F1Q1)

Other databases:

- EMBL:   CP000627
- EMBL:   CP001235
- ProteinModelPortal:   A5F1Q1
- SMR:   A5F1Q1
- STRING:   A5F1Q1
- GenomeReviews:   CP000627_GR
- GenomeReviews:   CP001235_GR
- KEGG:   vco:VC0395_A0907
- eggNOG:   COG3131
- HOGENOM:   HBG349977
- OMA:   YRFTIRP
- ProtClustDB:   PRK13273
- BioCyc:   VCHO345073:VC0395_A0907-MONOMER
- HAMAP:   MF_01069
- InterPro:   IPR014438
- InterPro:   IPR007444
- InterPro:   IPR011013
- InterPro:   IPR014756
- PIRSF:   PIRSF006281

Pfam domain/function: PF04349 MdoG; SSF74650 Gal_mut_like; SSF81296 Ig_E-set

EC number: NA

Molecular weight: Translated: 60874; Mature: 60874

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRVSSAVQRHAQKLIVLFSLLFGASLLMSDNGFATDIKNTNASSPVNSESTKPTKAGEV
CEECHHHHHHHHHHHHHHHHHHHCCEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCHHH
KNVVRFAKTGSFDNDTVVRLARQLAKKPYVALKDPLPESLANISYDEYRDIRFKPDSAVW
HHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEECCCCHHHHHHCCHHHCCCEEECCCCCEE
KADGLPYQMQLFHRGFFFQDLIEIALVEGNQATHLSYDPNMFTAGEVLQQNLPTEDIGYS
ECCCCCHHHHHHHCCCHHHHHHHEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCC
GLRVHYPLNSPSYFDELFVFQGASYFRALGKGNAYGLSARGLAIKTADPAGEEFPIFRAF
CEEEEECCCCCHHHHHHHHHCCCHHHHHHCCCCCEEEEECCEEEEECCCCCCCCCEEEEE
WVEKPNYDTNLIVVHALLDSPSVSGAYRFSIRPGENTRMDVEAVLFPRVELSKVGLAPAT
EEECCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCCCEEEEEEEECCEEHHHCCCCCCH
SMFMHSPNGREKTDDFRPSVHDSDGLLMINGRGERLWRPLANPSTLQVSAFMDNSPQGFG
HHEEECCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHCCCCCCCEEEEEEEECCCCCCCC
LMQRERDYANYQDLEAHYEKRPSLWVEPVGNWGPGAVVLTEIPTQSEIHDNIVAFWKPAQ
CHHHHHCCCCHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCCCHHHHCCEEEEECCCC
PLAAGSEYRFSYHLNWGAQPEANPQAITVSRTASGRADIAKPTPKRLFVIDYQVQGAKPA
CCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCC
QMPEPKVRSNAGVISNVVLRDNPANNGYRLSFEFDPGEVTLAELRAELTLQEARPVETWL
CCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEHHHHHHHHHHHHCCCCCCEE
YRWTL
EEECC
>Mature Secondary Structure
MIRVSSAVQRHAQKLIVLFSLLFGASLLMSDNGFATDIKNTNASSPVNSESTKPTKAGEV
CEECHHHHHHHHHHHHHHHHHHHCCEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCHHH
KNVVRFAKTGSFDNDTVVRLARQLAKKPYVALKDPLPESLANISYDEYRDIRFKPDSAVW
HHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEECCCCHHHHHHCCHHHCCCEEECCCCCEE
KADGLPYQMQLFHRGFFFQDLIEIALVEGNQATHLSYDPNMFTAGEVLQQNLPTEDIGYS
ECCCCCHHHHHHHCCCHHHHHHHEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCC
GLRVHYPLNSPSYFDELFVFQGASYFRALGKGNAYGLSARGLAIKTADPAGEEFPIFRAF
CEEEEECCCCCHHHHHHHHHCCCHHHHHHCCCCCEEEEECCEEEEECCCCCCCCCEEEEE
WVEKPNYDTNLIVVHALLDSPSVSGAYRFSIRPGENTRMDVEAVLFPRVELSKVGLAPAT
EEECCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCCCEEEEEEEECCEEHHHCCCCCCH
SMFMHSPNGREKTDDFRPSVHDSDGLLMINGRGERLWRPLANPSTLQVSAFMDNSPQGFG
HHEEECCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHCCCCCCCEEEEEEEECCCCCCCC
LMQRERDYANYQDLEAHYEKRPSLWVEPVGNWGPGAVVLTEIPTQSEIHDNIVAFWKPAQ
CHHHHHCCCCHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCCCHHHHCCEEEEECCCC
PLAAGSEYRFSYHLNWGAQPEANPQAITVSRTASGRADIAKPTPKRLFVIDYQVQGAKPA
CCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCC
QMPEPKVRSNAGVISNVVLRDNPANNGYRLSFEFDPGEVTLAELRAELTLQEARPVETWL
CCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEHHHHHHHHHHHHCCCCCCEE
YRWTL
EEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA