Definition Vibrio cholerae O395 chromosome 2, complete sequence.
Accession NC_009457
Length 3,024,069

Click here to switch to the map view.

The map label for this gene is 147675359

Identifier: 147675359

GI number: 147675359

Start: 2533438

End: 2534067

Strand: Reverse

Name: 147675359

Synonym: VC0395_A2377

Alternate gene names: NA

Gene position: 2534067-2533438 (Counterclockwise)

Preceding gene: 147673177

Following gene: 147673157

Centisome position: 83.8

GC content: 48.41

Gene sequence:

>630_bases
ATGAGCATGTTGAGCTGGATTTCTGTCGTGTTGTCGGGGTTTATCAGCATTTCTACTTATGAAAATCAGAAGCTTAAGCA
AGCGATATTCTTTCGAATCTTCAGCCTCCTGTTACTGACAATTATTGTGTGGGAGCAGCACAGTCATGCCACGCCAGAGG
TGATTTTTATCTCTCTTGGTTTGGCGGTGTCGATGTTTGCGCATGGACTGCGGCTAAATCATCGCTACCACAAAGCCAGC
TTTGTGCTGTTTTTAGTCGCGCAACTGCTGTTTAGTAAAGCATTCTGGGTGCAATTGTCGGGGAGTATGGTGTGGTGGTT
GCCCGCATTACTGGTGGCGGCAAGCATAGTGGCGTTTTTTTTGTTACTGCCACAAATTGATACCTTAATCTTCCCGGTCA
CCATTATGGGGTTGATGTTAGTACAGATGACGTGGGCTGCGGGTGAACTGTGGCTACAAGAGGCCACCGTGGCTTCTGGC
GCTGGTTTCTTAGGATGTCTGGTTTATATCCTCTCGGCCACGTTATTAGCCATCCACGATTATCGGCGTCCACTTCCTTG
GGGGCACACTCTTATCTCCAGCTCCTACTTGATAGCCCAAGCCTTGATCTCAGCGTCGATCGTGTTTTAG

Upstream 100 bases:

>100_bases
CAGCTCAAGTAAGGATTCGCTAGCAAGATCCAACTTTTTACTTTCATAACTGGACATCAAAAGTCAGATCCCTACACTGG
CGGCAGTTTGAGTTAGGGGT

Downstream 100 bases:

>100_bases
TCATATTCACGGTCTATGATGTAAAAAAACCGCCTCGCGGCGGTTTTTTTACATCATGTATTTACGGCGAATATCCAACA
GGGCAAAAATGCCAAAGATC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 209; Mature: 208

Protein sequence:

>209_residues
MSMLSWISVVLSGFISISTYENQKLKQAIFFRIFSLLLLTIIVWEQHSHATPEVIFISLGLAVSMFAHGLRLNHRYHKAS
FVLFLVAQLLFSKAFWVQLSGSMVWWLPALLVAASIVAFFLLLPQIDTLIFPVTIMGLMLVQMTWAAGELWLQEATVASG
AGFLGCLVYILSATLLAIHDYRRPLPWGHTLISSSYLIAQALISASIVF

Sequences:

>Translated_209_residues
MSMLSWISVVLSGFISISTYENQKLKQAIFFRIFSLLLLTIIVWEQHSHATPEVIFISLGLAVSMFAHGLRLNHRYHKAS
FVLFLVAQLLFSKAFWVQLSGSMVWWLPALLVAASIVAFFLLLPQIDTLIFPVTIMGLMLVQMTWAAGELWLQEATVASG
AGFLGCLVYILSATLLAIHDYRRPLPWGHTLISSSYLIAQALISASIVF
>Mature_208_residues
SMLSWISVVLSGFISISTYENQKLKQAIFFRIFSLLLLTIIVWEQHSHATPEVIFISLGLAVSMFAHGLRLNHRYHKASF
VLFLVAQLLFSKAFWVQLSGSMVWWLPALLVAASIVAFFLLLPQIDTLIFPVTIMGLMLVQMTWAAGELWLQEATVASGA
GFLGCLVYILSATLLAIHDYRRPLPWGHTLISSSYLIAQALISASIVF

Specific function: Unknown

COG id: COG3714

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23345; Mature: 23214

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMLSWISVVLSGFISISTYENQKLKQAIFFRIFSLLLLTIIVWEQHSHATPEVIFISLG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
LAVSMFAHGLRLNHRYHKASFVLFLVAQLLFSKAFWVQLSGSMVWWLPALLVAASIVAFF
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LLLPQIDTLIFPVTIMGLMLVQMTWAAGELWLQEATVASGAGFLGCLVYILSATLLAIHD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
YRRPLPWGHTLISSSYLIAQALISASIVF
HCCCCCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SMLSWISVVLSGFISISTYENQKLKQAIFFRIFSLLLLTIIVWEQHSHATPEVIFISLG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
LAVSMFAHGLRLNHRYHKASFVLFLVAQLLFSKAFWVQLSGSMVWWLPALLVAASIVAFF
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LLLPQIDTLIFPVTIMGLMLVQMTWAAGELWLQEATVASGAGFLGCLVYILSATLLAIHD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
YRRPLPWGHTLISSSYLIAQALISASIVF
HCCCCCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA