Click here to switch to the map view.

The map label for this gene is dedD [H]

Identifier: 147675233

GI number: 147675233

Start: 563906

End: 564502

Strand: Direct

Name: dedD [H]

Synonym: VC0395_A0523

Alternate gene names: 147675233

Gene position: 563906-564502 (Clockwise)

Preceding gene: 147673270

Following gene: 147673757

Centisome position: 18.65

GC content: 47.24

Gene sequence:

>597_bases
ATGGCCAGTAAATTTCAAAGCCGTTTAGTTGGCACCATAGTGTTGGTCGCCATCGGCGTGATTGTGCTGCCCGATGTGCT
TGATGGTAAGAAAACGCATTTTAAAGAAGAGATTGCCAGCGTCCCAATTAAACCGCAGCCGGAAGGCGAGGTAGAAAAGT
TTGAAGTGCTGGATCCGGTGCAAGATGATATTGCCTTACCTGAAGCGCCGGTTTCCGTCACTCAGACGGGGCAGGATAAT
CAAGCCAGTGTTGCACCAGTAACGCCGACGGTGGTGAAAAACAGTGCGCCAGTCAAAGTGGCAGCAGAGCAGCCTGTGCC
CGTGACGGTCACTGAGGTTCCAGAAACGAATGAATACCAAGATTCCGCGTGGATCATTCAGTTAGTGGCACTGAAAAATG
CCGATAATGCACGCAATCTCGTGGCTGACTTACAAAAGCGTGGTTACCAAGCGCATGTCAAACAAGAGAATGATTTCACC
CGAGTGATTATTGGTCCTGATGTTTCAAAATCTAAGTTAGAAACCCAACTCGTGGAATTGGAAAAAATTACCGGTGCTAA
AGGTCAATTGCTCAAATTTAAACCACTAAACCCATAA

Upstream 100 bases:

>100_bases
CGCGTTGACACAGGCTGGGGCACAAGATGTCATTGTAGTTGCGGGCTCTTTCCATACGGTAGGTGAAGTGCTTGAACATT
GGCAAAAGAGAGGGGAATAA

Downstream 100 bases:

>100_bases
GAAAACGTTTGCGTCGCGTTTTTTTCTGTTAAAATGCGCGCCAACTTAAGATGTAAGAACTCATGAACTGGTTAGATATT
GTCATTTTAAGTGTGATCGG

Product: dedD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MASKFQSRLVGTIVLVAIGVIVLPDVLDGKKTHFKEEIASVPIKPQPEGEVEKFEVLDPVQDDIALPEAPVSVTQTGQDN
QASVAPVTPTVVKNSAPVKVAAEQPVPVTVTEVPETNEYQDSAWIIQLVALKNADNARNLVADLQKRGYQAHVKQENDFT
RVIIGPDVSKSKLETQLVELEKITGAKGQLLKFKPLNP

Sequences:

>Translated_198_residues
MASKFQSRLVGTIVLVAIGVIVLPDVLDGKKTHFKEEIASVPIKPQPEGEVEKFEVLDPVQDDIALPEAPVSVTQTGQDN
QASVAPVTPTVVKNSAPVKVAAEQPVPVTVTEVPETNEYQDSAWIIQLVALKNADNARNLVADLQKRGYQAHVKQENDFT
RVIIGPDVSKSKLETQLVELEKITGAKGQLLKFKPLNP
>Mature_197_residues
ASKFQSRLVGTIVLVAIGVIVLPDVLDGKKTHFKEEIASVPIKPQPEGEVEKFEVLDPVQDDIALPEAPVSVTQTGQDNQ
ASVAPVTPTVVKNSAPVKVAAEQPVPVTVTEVPETNEYQDSAWIIQLVALKNADNARNLVADLQKRGYQAHVKQENDFTR
VIIGPDVSKSKLETQLVELEKITGAKGQLLKFKPLNP

Specific function: Unknown

COG id: COG3147

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082083, Length=222, Percent_Identity=31.5315315315315, Blast_Score=105, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007730 [H]

Pfam domain/function: PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 21489; Mature: 21358

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASKFQSRLVGTIVLVAIGVIVLPDVLDGKKTHFKEEIASVPIKPQPEGEVEKFEVLDPV
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEECCCCC
QDDIALPEAPVSVTQTGQDNQASVAPVTPTVVKNSAPVKVAAEQPVPVTVTEVPETNEYQ
CHHCCCCCCCCEEEECCCCCCCEECCCCHHHCCCCCCEEEECCCCCCEEEECCCCCCCCC
DSAWIIQLVALKNADNARNLVADLQKRGYQAHVKQENDFTRVIIGPDVSKSKLETQLVEL
CCCEEEEEEEECCCCCHHHHHHHHHHCCCEEEECCCCCEEEEEECCCCCHHHHHHHHHHH
EKITGAKGQLLKFKPLNP
HHHCCCCCCEEEEECCCC
>Mature Secondary Structure 
ASKFQSRLVGTIVLVAIGVIVLPDVLDGKKTHFKEEIASVPIKPQPEGEVEKFEVLDPV
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEECCCCC
QDDIALPEAPVSVTQTGQDNQASVAPVTPTVVKNSAPVKVAAEQPVPVTVTEVPETNEYQ
CHHCCCCCCCCEEEECCCCCCCEECCCCHHHCCCCCCEEEECCCCCCEEEECCCCCCCCC
DSAWIIQLVALKNADNARNLVADLQKRGYQAHVKQENDFTRVIIGPDVSKSKLETQLVEL
CCCEEEEEEEECCCCCHHHHHHHHHHCCCEEEECCCCCEEEEEECCCCCHHHHHHHHHHH
EKITGAKGQLLKFKPLNP
HHHCCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3040734; 9205837; 9278503 [H]