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The map label for this gene is sspB [H]

Identifier: 147675024

GI number: 147675024

Start: 98331

End: 98807

Strand: Direct

Name: sspB [H]

Synonym: VC0395_A0109

Alternate gene names: 147675024

Gene position: 98331-98807 (Clockwise)

Preceding gene: 147675668

Following gene: 147673119

Centisome position: 3.25

GC content: 46.96

Gene sequence:

>477_bases
ATGGATGCCGGAATGGATATTGGTCACATGACACCACGCCGACCATATTTGCTACGTGCATTTTATGATTGGTTACTGGA
AAATGAATTAACGCCGCACCTCGTCGTTGATGCCACTTTACCGGGCGTGAAGGTACCACTTGAATACGTTCAAGATGGTC
AAATTATTCTGAATGTTGCTCCACGAGCAGTGGGAAACCTAGAGTTGGGCAATGATGAAGTGACCTTTAATGCCCGTTTC
GGTGGTCGTCCTCATTTGGTTATCGTGCCTATTTATGCTGTGCAGGCCATTTATGCCCGTGAAAATGGCGCAGGCACTAT
GTTTGAGCCGGAGCCTGCTTATCTAGATATGATGGATTTTCCTGAAGAGATTGATTCAGATGACTCCTTGATTGAGCTGG
AAAGCGATGTTGCGGTTGAGCACACTGAAGAGACTCCACGCCCTAGAGGCAAACCGAGTTTACGTGTCGTGAAGTAA

Upstream 100 bases:

>100_bases
GCTCAAAAGAGCTGAAAGTGTATATGAACCGTGTATTTGAACGTGATTCATTCTTGGCTTCACTGACTGAAGCTGAACGC
GAGATGCGTCTGGCTCGCTA

Downstream 100 bases:

>100_bases
ATAAATCTCATGAAATCAAAAAGGCAGTGGTCATCGCTGCCTTTTTCATATCCCACTCTCAAAATCGTTACTGAGCGTAA
TCAAACGCCTTCACAACCTG

Product: ClpXP protease specificity-enhancing factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MDAGMDIGHMTPRRPYLLRAFYDWLLENELTPHLVVDATLPGVKVPLEYVQDGQIILNVAPRAVGNLELGNDEVTFNARF
GGRPHLVIVPIYAVQAIYARENGAGTMFEPEPAYLDMMDFPEEIDSDDSLIELESDVAVEHTEETPRPRGKPSLRVVK

Sequences:

>Translated_158_residues
MDAGMDIGHMTPRRPYLLRAFYDWLLENELTPHLVVDATLPGVKVPLEYVQDGQIILNVAPRAVGNLELGNDEVTFNARF
GGRPHLVIVPIYAVQAIYARENGAGTMFEPEPAYLDMMDFPEEIDSDDSLIELESDVAVEHTEETPRPRGKPSLRVVK
>Mature_158_residues
MDAGMDIGHMTPRRPYLLRAFYDWLLENELTPHLVVDATLPGVKVPLEYVQDGQIILNVAPRAVGNLELGNDEVTFNARF
GGRPHLVIVPIYAVQAIYARENGAGTMFEPEPAYLDMMDFPEEIDSDDSLIELESDVAVEHTEETPRPRGKPSLRVVK

Specific function: Seems to act in concert with sspA in the regulation of several proteins during exponential and stationary-phase growth. The exact function of sspB is not yet known [H]

COG id: COG2969

COG function: function code R; Stringent starvation protein B

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789623, Length=110, Percent_Identity=78.1818181818182, Blast_Score=186, Evalue=5e-49,

Paralogues:

None

Copy number: 297 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007481 [H]

Pfam domain/function: PF04386 SspB [H]

EC number: NA

Molecular weight: Translated: 17687; Mature: 17687

Theoretical pI: Translated: 4.26; Mature: 4.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAGMDIGHMTPRRPYLLRAFYDWLLENELTPHLVVDATLPGVKVPLEYVQDGQIILNVA
CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHCCCCEEEEEEC
PRAVGNLELGNDEVTFNARFGGRPHLVIVPIYAVQAIYARENGAGTMFEPEPAYLDMMDF
CCCCCCEEECCCEEEEEEECCCCCCEEEEEHHHEEEEEECCCCCCCEECCCCCEECCCCC
PEEIDSDDSLIELESDVAVEHTEETPRPRGKPSLRVVK
HHHHCCCCCEEEECCCCEEEECCCCCCCCCCCCEEEEC
>Mature Secondary Structure
MDAGMDIGHMTPRRPYLLRAFYDWLLENELTPHLVVDATLPGVKVPLEYVQDGQIILNVA
CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHCCCCEEEEEEC
PRAVGNLELGNDEVTFNARFGGRPHLVIVPIYAVQAIYARENGAGTMFEPEPAYLDMMDF
CCCCCCEEECCCEEEEEEECCCCCCEEEEEHHHEEEEEECCCCCCCEECCCCCEECCCCC
PEEIDSDDSLIELESDVAVEHTEETPRPRGKPSLRVVK
HHHHCCCCCEEEECCCCEEEECCCCCCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]