Click here to switch to the map view.

The map label for this gene is padC

Identifier: 147674939

GI number: 147674939

Start: 1947339

End: 1947863

Strand: Reverse

Name: padC

Synonym: VC0395_A1832

Alternate gene names: 147674939

Gene position: 1947863-1947339 (Counterclockwise)

Preceding gene: 147675046

Following gene: 147675404

Centisome position: 64.41

GC content: 44.76

Gene sequence:

>525_bases
ATGAGATTTGAACGAAATGATTTAAGTGGATTTTTAGGGAAGAGTTTTATCTATAACTATGATCAGGGTTGGCGTTATGA
GCTGTATGTGAAAAATGCGACCACCATAGATTATCGAGTCCATTCTGGGATTGTTGGTGGGCGATGGGTGAAAGATCAAA
CCGTGCATATCTCGCGAGTTGGGGCGGCCATTTATCGGGTTTCTTGGGCTGAGCCAACTGGAACCAGCGTCGCTCTCACC
TTAAACTTAGAGGATTATGTCGTGCATGGTGCCATTTACTTTCCTCGCTGGATTGTTGATGAGCCTGAAAAAATTGCTTG
CTATCAAAATGACCATCTCCCTCTTATGGAAGCGTACCGTGATGCCGGGCCTATCTATCCAACCCATGTGATCGATAGCT
TTGCGACCTTGATTTATATGCGTGATTGCGGACTCAATAATGAACAAGTGATTAACTGCCCCCCCAGTGAGCTTGCTGAG
GATTATCCTTTCTGTTTAGCCGATAAAAACTTACTGCCAGCCTAA

Upstream 100 bases:

>100_bases
ATTCATTTCACTTTTGATTGCAACCAATTCCAATGATTTATGCTCTCAATGCATGGGAATGATCCCGATCGTCATTATGA
ACTGTCGTAGAGGAGCGGCC

Downstream 100 bases:

>100_bases
GTGTGGTCATGGCGTAAGCTGATGAAGATGGCTTTGGGAGCACGGAAAAGTCTATAGTGGCTTGAGTAACAAAAGGAAAA
ATTACTCAAGCACTTTGGTT

Product: decarboxylase

Products: NA

Alternate protein names: PAD

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MRFERNDLSGFLGKSFIYNYDQGWRYELYVKNATTIDYRVHSGIVGGRWVKDQTVHISRVGAAIYRVSWAEPTGTSVALT
LNLEDYVVHGAIYFPRWIVDEPEKIACYQNDHLPLMEAYRDAGPIYPTHVIDSFATLIYMRDCGLNNEQVINCPPSELAE
DYPFCLADKNLLPA

Sequences:

>Translated_174_residues
MRFERNDLSGFLGKSFIYNYDQGWRYELYVKNATTIDYRVHSGIVGGRWVKDQTVHISRVGAAIYRVSWAEPTGTSVALT
LNLEDYVVHGAIYFPRWIVDEPEKIACYQNDHLPLMEAYRDAGPIYPTHVIDSFATLIYMRDCGLNNEQVINCPPSELAE
DYPFCLADKNLLPA
>Mature_174_residues
MRFERNDLSGFLGKSFIYNYDQGWRYELYVKNATTIDYRVHSGIVGGRWVKDQTVHISRVGAAIYRVSWAEPTGTSVALT
LNLEDYVVHGAIYFPRWIVDEPEKIACYQNDHLPLMEAYRDAGPIYPTHVIDSFATLIYMRDCGLNNEQVINCPPSELAE
DYPFCLADKNLLPA

Specific function: Catalyzes the decarboxylation of phenolic acids

COG id: COG3479

COG function: function code Q; Phenolic acid decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the padC family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PADC_VIBCH (Q9KPX2)

Other databases:

- EMBL:   AE003852
- PIR:   B82100
- RefSeq:   NP_231871.1
- ProteinModelPortal:   Q9KPX2
- SMR:   Q9KPX2
- GeneID:   2613162
- GenomeReviews:   AE003852_GR
- KEGG:   vch:VC2240
- TIGR:   VC_2240
- HOGENOM:   HBG338339
- OMA:   DYRIHSG
- ProtClustDB:   CLSK874730
- GO:   GO:0005488
- InterPro:   IPR012674
- InterPro:   IPR011038
- InterPro:   IPR008729
- Gene3D:   G3DSA:2.40.128.20
- PIRSF:   PIRSF011561
- ProDom:   PD022010

Pfam domain/function: PF05870 PA_decarbox; SSF50814 Calycin

EC number: NA

Molecular weight: Translated: 19933; Mature: 19933

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFERNDLSGFLGKSFIYNYDQGWRYELYVKNATTIDYRVHSGIVGGRWVKDQTVHISRV
CCCCCCCHHHHHCCCEEEECCCCCEEEEEEECCEEEEEEECCCCCCCEEECCCEEEEEHH
GAAIYRVSWAEPTGTSVALTLNLEDYVVHGAIYFPRWIVDEPEKIACYQNDHLPLMEAYR
CEEEEEEEECCCCCCEEEEEEECHHEEEEEEEECCEEECCCCCEEEEEECCCCCHHHHHH
DAGPIYPTHVIDSFATLIYMRDCGLNNEQVINCPPSELAEDYPFCLADKNLLPA
CCCCCCHHHHHHHHHHHEEEECCCCCCCEEEECCCHHHHCCCCEEEECCCCCCC
>Mature Secondary Structure
MRFERNDLSGFLGKSFIYNYDQGWRYELYVKNATTIDYRVHSGIVGGRWVKDQTVHISRV
CCCCCCCHHHHHCCCEEEECCCCCEEEEEEECCEEEEEEECCCCCCCEEECCCEEEEEHH
GAAIYRVSWAEPTGTSVALTLNLEDYVVHGAIYFPRWIVDEPEKIACYQNDHLPLMEAYR
CEEEEEEEECCCCCCEEEEEEECHHEEEEEEEECCEEECCCCCEEEEEECCCCCHHHHHH
DAGPIYPTHVIDSFATLIYMRDCGLNNEQVINCPPSELAEDYPFCLADKNLLPA
CCCCCCHHHHHHHHHHHEEEECCCCCCCEEEECCCHHHHCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301