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The map label for this gene is rpfG [H]

Identifier: 147674798

GI number: 147674798

Start: 931546

End: 933024

Strand: Reverse

Name: rpfG [H]

Synonym: VC0395_A0913

Alternate gene names: 147674798

Gene position: 933024-931546 (Counterclockwise)

Preceding gene: 147673141

Following gene: 147674157

Centisome position: 30.85

GC content: 48.41

Gene sequence:

>1479_bases
TTGACCATTTGGGTTCTATCACTTGCTATGAAAAACACGATTTACCATGCCCCACTGACGTTTGGACTCTATGCGCTTGC
TGGAGTGCTCTTTGCGCTTTACACAAGCCGAGTCTGTCCTTTTCTCGCGACATTAAGCACTCGTGAAATCGCCACTCAGG
TGGGTGCTGTCTTCATCCTCGCATGGCTGATTCGGCATACTCTGCTTCGCCAGCACATTTGGGCAAGAAAACAGCAATTT
ATCCAATTGGACACGGCACTCCTCTTCGCAATGAGCCTGCCTTTAGCGCTTTACTACAATCTGCAATACCAGTTCACGTT
AGACAGTAATTTAAAAGTACTGTTTGGAATGACCTTATTTGGTTTCTTCACCGGAGCGTTATTGCAATTAAGCAGTAAGT
TAAGAACGCTGCGCCAAATGCCTCAAAGTCAGAACCTTGCTCTCTCTTCTGATGAGCGACGTTCCTTAGTCAAACAGCTG
ATTGGCTTGATCGTCCTTTTAATCAGCACACTGACGGTGATGCTCAGCATGGTCGCAATCAAAGATATTCACTGGCTGGA
AAATAACCCTGCGCGCCTACTTGATGGCAGTGGCAAGATCAGCATTGTGAAAGAGTTTGCCTTTTTGTCCTTGGTGTTAG
GCGGCTACATCACGGCCATTCTCGTACTCTGGAGTCGAGTGATGAAAGAGATCCTCGACCATCAGGAGCGCTCATTGCAA
GCCGTGACGCAAGGCAACCTCCAAGTACGCCTTCCCGTCTACTCTAACGATGAGTTAGGCAATGTCGCCATGTTGACCAA
TCAGATGTTAGACAGCTTAGAAGCTACGCAAAATGAGGTCAAAACCACACGTGATGTGGCTATCGTCAGCTTATCGGCTC
TCGCGGAATCACGAGATAACGAGACAGGGGCACATATTCTTCGCACTCAAGAATACGTCAAAGCGTTAGCAGAATATCTC
GCTGCTTTTCCCCAATATTCAACGCTGTTAACCCCGGCTTATATCGAACTACTCTACAAATCCGCGCCATTACATGATGT
AGGCAAGGTTGGCATTCCAGATTCGGTTCTGCTCAAACCGGGCAAACTGACCGATGAGGAGTTCACCGTCATGAAAGAGC
ATCCGCGTATCGGGGCGCAAGCACTTGCGATTGCTGAGCGCCATTTAGGGACGAGCTCCTTCCTCGCCATTGCCAAAGAA
ATTGCTCTCACTCACCACGAAAAATGGGATGGCACGGGTTATCCGGCGCAATTACAAGGAGAAGCCATCCCGCTTTCCGG
TCGCTTAATGGCGTTAGCCGATGTGTATGATGCCTTGATTTCAGCTCGGGTTTATAAACCGGCTTTTAGTCATGACAAAG
CCAAAGCCATTATTGTCGAAGGCAGTGGTCACCATTTTGATCCTGTCGTGGTCGAGGCTTTTCTCGCGGTTGAGGAAAAG
TTCGTGGCCATTGCAGCACACTTTAAAGATGCCGCATAA

Upstream 100 bases:

>100_bases
ATCACCCAGCAATGTCTATAAAATCCGCGCCTTTATTCAAAACGATAATAAATCACACTCACTTTAATGATGCTGCTTAT
ACTTAACTAGCCGTAACTTA

Downstream 100 bases:

>100_bases
GGTTGTAGTTATACCTTTTCTACTTGAAGCTGCAGCGGTGTTGGCGACGCTCTGCTTTGCGAATGCTCAATCCATGACGA
TGGAAAGAAATGAAAATTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 492; Mature: 491

Protein sequence:

>492_residues
MTIWVLSLAMKNTIYHAPLTFGLYALAGVLFALYTSRVCPFLATLSTREIATQVGAVFILAWLIRHTLLRQHIWARKQQF
IQLDTALLFAMSLPLALYYNLQYQFTLDSNLKVLFGMTLFGFFTGALLQLSSKLRTLRQMPQSQNLALSSDERRSLVKQL
IGLIVLLISTLTVMLSMVAIKDIHWLENNPARLLDGSGKISIVKEFAFLSLVLGGYITAILVLWSRVMKEILDHQERSLQ
AVTQGNLQVRLPVYSNDELGNVAMLTNQMLDSLEATQNEVKTTRDVAIVSLSALAESRDNETGAHILRTQEYVKALAEYL
AAFPQYSTLLTPAYIELLYKSAPLHDVGKVGIPDSVLLKPGKLTDEEFTVMKEHPRIGAQALAIAERHLGTSSFLAIAKE
IALTHHEKWDGTGYPAQLQGEAIPLSGRLMALADVYDALISARVYKPAFSHDKAKAIIVEGSGHHFDPVVVEAFLAVEEK
FVAIAAHFKDAA

Sequences:

>Translated_492_residues
MTIWVLSLAMKNTIYHAPLTFGLYALAGVLFALYTSRVCPFLATLSTREIATQVGAVFILAWLIRHTLLRQHIWARKQQF
IQLDTALLFAMSLPLALYYNLQYQFTLDSNLKVLFGMTLFGFFTGALLQLSSKLRTLRQMPQSQNLALSSDERRSLVKQL
IGLIVLLISTLTVMLSMVAIKDIHWLENNPARLLDGSGKISIVKEFAFLSLVLGGYITAILVLWSRVMKEILDHQERSLQ
AVTQGNLQVRLPVYSNDELGNVAMLTNQMLDSLEATQNEVKTTRDVAIVSLSALAESRDNETGAHILRTQEYVKALAEYL
AAFPQYSTLLTPAYIELLYKSAPLHDVGKVGIPDSVLLKPGKLTDEEFTVMKEHPRIGAQALAIAERHLGTSSFLAIAKE
IALTHHEKWDGTGYPAQLQGEAIPLSGRLMALADVYDALISARVYKPAFSHDKAKAIIVEGSGHHFDPVVVEAFLAVEEK
FVAIAAHFKDAA
>Mature_491_residues
TIWVLSLAMKNTIYHAPLTFGLYALAGVLFALYTSRVCPFLATLSTREIATQVGAVFILAWLIRHTLLRQHIWARKQQFI
QLDTALLFAMSLPLALYYNLQYQFTLDSNLKVLFGMTLFGFFTGALLQLSSKLRTLRQMPQSQNLALSSDERRSLVKQLI
GLIVLLISTLTVMLSMVAIKDIHWLENNPARLLDGSGKISIVKEFAFLSLVLGGYITAILVLWSRVMKEILDHQERSLQA
VTQGNLQVRLPVYSNDELGNVAMLTNQMLDSLEATQNEVKTTRDVAIVSLSALAESRDNETGAHILRTQEYVKALAEYLA
AFPQYSTLLTPAYIELLYKSAPLHDVGKVGIPDSVLLKPGKLTDEEFTVMKEHPRIGAQALAIAERHLGTSSFLAIAKEI
ALTHHEKWDGTGYPAQLQGEAIPLSGRLMALADVYDALISARVYKPAFSHDKAKAIIVEGSGHHFDPVVVEAFLAVEEKF
VAIAAHFKDAA

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 54562; Mature: 54431

Theoretical pI: Translated: 7.55; Mature: 7.55

Prosite motif: PS50885 HAMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIWVLSLAMKNTIYHAPLTFGLYALAGVLFALYTSRVCPFLATLSTREIATQVGAVFIL
CEEEEEEHHHHHHHEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AWLIRHTLLRQHIWARKQQFIQLDTALLFAMSLPLALYYNLQYQFTLDSNLKVLFGMTLF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEEEEEEEECCCCHHHHHHHHH
GFFTGALLQLSSKLRTLRQMPQSQNLALSSDERRSLVKQLIGLIVLLISTLTVMLSMVAI
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KDIHWLENNPARLLDGSGKISIVKEFAFLSLVLGGYITAILVLWSRVMKEILDHQERSLQ
HHHHHCCCCCHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVTQGNLQVRLPVYSNDELGNVAMLTNQMLDSLEATQNEVKTTRDVAIVSLSALAESRDN
HHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
ETGAHILRTQEYVKALAEYLAAFPQYSTLLTPAYIELLYKSAPLHDVGKVGIPDSVLLKP
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECC
GKLTDEEFTVMKEHPRIGAQALAIAERHLGTSSFLAIAKEIALTHHEKWDGTGYPAQLQG
CCCCCHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCEECC
EAIPLSGRLMALADVYDALISARVYKPAFSHDKAKAIIVEGSGHHFDPVVVEAFLAVEEK
CEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
FVAIAAHFKDAA
HHHHHHHHCCCC
>Mature Secondary Structure 
TIWVLSLAMKNTIYHAPLTFGLYALAGVLFALYTSRVCPFLATLSTREIATQVGAVFIL
EEEEEEHHHHHHHEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AWLIRHTLLRQHIWARKQQFIQLDTALLFAMSLPLALYYNLQYQFTLDSNLKVLFGMTLF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEEEEEEEECCCCHHHHHHHHH
GFFTGALLQLSSKLRTLRQMPQSQNLALSSDERRSLVKQLIGLIVLLISTLTVMLSMVAI
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KDIHWLENNPARLLDGSGKISIVKEFAFLSLVLGGYITAILVLWSRVMKEILDHQERSLQ
HHHHHCCCCCHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVTQGNLQVRLPVYSNDELGNVAMLTNQMLDSLEATQNEVKTTRDVAIVSLSALAESRDN
HHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
ETGAHILRTQEYVKALAEYLAAFPQYSTLLTPAYIELLYKSAPLHDVGKVGIPDSVLLKP
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECC
GKLTDEEFTVMKEHPRIGAQALAIAERHLGTSSFLAIAKEIALTHHEKWDGTGYPAQLQG
CCCCCHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCEECC
EAIPLSGRLMALADVYDALISARVYKPAFSHDKAKAIIVEGSGHHFDPVVVEAFLAVEEK
CEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
FVAIAAHFKDAA
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]