Click here to switch to the map view.

The map label for this gene is yiiR [H]

Identifier: 147674718

GI number: 147674718

Start: 2390072

End: 2390512

Strand: Reverse

Name: yiiR [H]

Synonym: VC0395_A2241

Alternate gene names: 147674718

Gene position: 2390512-2390072 (Counterclockwise)

Preceding gene: 147675135

Following gene: 147675387

Centisome position: 79.05

GC content: 49.66

Gene sequence:

>441_bases
ATGTCGTTACAAACACTGTTGTTTTCTTTTCAGGGGCGTATTGGTCGCCAAGCTTTCTGGCTGTGGAATATTTGCTACTA
CGCCATGATTGCCGGTTTTGCAATGGGATCGAATCTGCTATTTCCCGATGTTGCGCACCTGATCTTGCCGGTTTTTCTGC
TGGTAGTCTTAGTGCCAGATTTGGCGATTACCGCTAAGCGTTGGCATGATCGTGACAAATCAAGCTGGTGGTTGCTACTC
AATGTGCCGCTTGTGATTGGCCGCATGACGATTCCGGCAGGAGAATTGGCCGTGAATACCCAACCCGGCATGCTGGAAAC
ACTTATCTCGTTTGTGGCCTTACTGTGTGGTGCATGGATTTTGGTGGAGTGCGGATTTCTTTCTGGCACGGATGGCAGTA
ACCGTTTTGGCGCCGAGCCGAAGTGGATCAAAAAAAGCTAG

Upstream 100 bases:

>100_bases
AAAGCCAGCCATGTGCGCAGTTTGACCATTAATATTCGAGATATGGATACAGACTGCTTTCAAAAAGTCATCAATCGATG
ACCTTGTTTAGGTAAAAGTC

Downstream 100 bases:

>100_bases
GCCAGCAATAAGCGGTATCAAATGCGTAAGAGAGGAGGTTTCTCTCCTCTCTTTATTGTCATCCCTAAACCACCGCTTTT
AGCGGTGGTGATTGTTCTTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 145

Protein sequence:

>146_residues
MSLQTLLFSFQGRIGRQAFWLWNICYYAMIAGFAMGSNLLFPDVAHLILPVFLLVVLVPDLAITAKRWHDRDKSSWWLLL
NVPLVIGRMTIPAGELAVNTQPGMLETLISFVALLCGAWILVECGFLSGTDGSNRFGAEPKWIKKS

Sequences:

>Translated_146_residues
MSLQTLLFSFQGRIGRQAFWLWNICYYAMIAGFAMGSNLLFPDVAHLILPVFLLVVLVPDLAITAKRWHDRDKSSWWLLL
NVPLVIGRMTIPAGELAVNTQPGMLETLISFVALLCGAWILVECGFLSGTDGSNRFGAEPKWIKKS
>Mature_145_residues
SLQTLLFSFQGRIGRQAFWLWNICYYAMIAGFAMGSNLLFPDVAHLILPVFLLVVLVPDLAITAKRWHDRDKSSWWLLLN
VPLVIGRMTIPAGELAVNTQPGMLETLISFVALLCGAWILVECGFLSGTDGSNRFGAEPKWIKKS

Specific function: Unknown

COG id: COG3152

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790355, Length=147, Percent_Identity=35.3741496598639, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008523 [H]

Pfam domain/function: PF05656 DUF805 [H]

EC number: NA

Molecular weight: Translated: 16299; Mature: 16167

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLQTLLFSFQGRIGRQAFWLWNICYYAMIAGFAMGSNLLFPDVAHLILPVFLLVVLVPD
CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
LAITAKRWHDRDKSSWWLLLNVPLVIGRMTIPAGELAVNTQPGMLETLISFVALLCGAWI
HHHHHHHHCCCCCCCEEEEEECCHHHHEECCCCCCEEECCCCCHHHHHHHHHHHHHHHHH
LVECGFLSGTDGSNRFGAEPKWIKKS
HHHCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SLQTLLFSFQGRIGRQAFWLWNICYYAMIAGFAMGSNLLFPDVAHLILPVFLLVVLVPD
CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
LAITAKRWHDRDKSSWWLLLNVPLVIGRMTIPAGELAVNTQPGMLETLISFVALLCGAWI
HHHHHHHHCCCCCCCEEEEEECCHHHHEECCCCCCEEECCCCCHHHHHHHHHHHHHHHHH
LVECGFLSGTDGSNRFGAEPKWIKKS
HHHCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]