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The map label for this gene is sodC [H]

Identifier: 147674669

GI number: 147674669

Start: 1248952

End: 1249467

Strand: Reverse

Name: sodC [H]

Synonym: VC0395_A1186

Alternate gene names: 147674669

Gene position: 1249467-1248952 (Counterclockwise)

Preceding gene: 147675624

Following gene: 147675267

Centisome position: 41.32

GC content: 50.78

Gene sequence:

>516_bases
ATGAATCAATTTACTTTGTTTGCGGTCGCCGCGTTTTTTTCTTCTTCGGTTTTGGCGCAAGAAATGACCGTAGTGATGAC
GGATTTGAGCTCTGGCCAATCCGTGGGCACCGTTACCTTAACTGATAGCGAGTATGGTACGGTCTTTACTCCGCAGTTAA
CTGGCTTGCCAGCCGGTTTGCACGGTTTTCATGTACACGCGAATGGCTCATGTGAAACCTCGTCCAAAGATGGCAAAACC
GTATTAGGTGGCGCTGCGGGTGGGCATTATGATCCGCAAAACACGGGAAAACACGGCTATCCGTGGACCAACGACAATCA
CTTGGGTGATCTCCCAGCTTTGTACGTGGATGCGCAAGGCCAAGCAAATCAACCCGTTTTGGCATCCCGCTTCAAAATGG
CAGAGGTAAAAGGTAAAGCTTTGATGGTCCACGCGGGCGGGGATAACCATTCCGACCATCCAATGCCTTTGGGTGGCGGT
GGTGCGCGCATCGTATGTGGTGTGATTGGTTTATAA

Upstream 100 bases:

>100_bases
AGCGCTGCATCAAGAAAAATTGGCTGTGTCGTCTTCCACTCAATCACGACCTCTCAACTAACTGTGTCTTACTCTCAAAC
CCTCAATAAGGATATCCATC

Downstream 100 bases:

>100_bases
AACGCTTTAAATATTGTTGGCCATCCTAGATGGCCAACAATATTTTATCTCGCACTGGAATCTGAGCTGGGCTGAGTGAT
GCGTTGCCAAGTGCCTTGGA

Product: superoxide dismutase, Cu-Zn

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MNQFTLFAVAAFFSSSVLAQEMTVVMTDLSSGQSVGTVTLTDSEYGTVFTPQLTGLPAGLHGFHVHANGSCETSSKDGKT
VLGGAAGGHYDPQNTGKHGYPWTNDNHLGDLPALYVDAQGQANQPVLASRFKMAEVKGKALMVHAGGDNHSDHPMPLGGG
GARIVCGVIGL

Sequences:

>Translated_171_residues
MNQFTLFAVAAFFSSSVLAQEMTVVMTDLSSGQSVGTVTLTDSEYGTVFTPQLTGLPAGLHGFHVHANGSCETSSKDGKT
VLGGAAGGHYDPQNTGKHGYPWTNDNHLGDLPALYVDAQGQANQPVLASRFKMAEVKGKALMVHAGGDNHSDHPMPLGGG
GARIVCGVIGL
>Mature_171_residues
MNQFTLFAVAAFFSSSVLAQEMTVVMTDLSSGQSVGTVTLTDSEYGTVFTPQLTGLPAGLHGFHVHANGSCETSSKDGKT
VLGGAAGGHYDPQNTGKHGYPWTNDNHLGDLPALYVDAQGQANQPVLASRFKMAEVKGKALMVHAGGDNHSDHPMPLGGG
GARIVCGVIGL

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Escherichia coli, GI1787934, Length=173, Percent_Identity=51.4450867052023, Blast_Score=170, Evalue=4e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 17683; Mature: 17683

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: PS00087 SOD_CU_ZN_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQFTLFAVAAFFSSSVLAQEMTVVMTDLSSGQSVGTVTLTDSEYGTVFTPQLTGLPAGL
CCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCCCEEEEEEECCCCCEEECCCCCCCCCCC
HGFHVHANGSCETSSKDGKTVLGGAAGGHYDPQNTGKHGYPWTNDNHLGDLPALYVDAQG
CEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC
QANQPVLASRFKMAEVKGKALMVHAGGDNHSDHPMPLGGGGARIVCGVIGL
CCCCCHHHHHEEEEECCCCEEEEEECCCCCCCCCCEECCCCCEEEEEEECC
>Mature Secondary Structure
MNQFTLFAVAAFFSSSVLAQEMTVVMTDLSSGQSVGTVTLTDSEYGTVFTPQLTGLPAGL
CCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCCCEEEEEEECCCCCEEECCCCCCCCCCC
HGFHVHANGSCETSSKDGKTVLGGAAGGHYDPQNTGKHGYPWTNDNHLGDLPALYVDAQG
CEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC
QANQPVLASRFKMAEVKGKALMVHAGGDNHSDHPMPLGGGGARIVCGVIGL
CCCCCHHHHHEEEEECCCCEEEEEECCCCCCCCCCEECCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3805055; 6884993; 3855538; 8917495; 9878406 [H]