| Definition | Vibrio cholerae O395 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_009457 |
| Length | 3,024,069 |
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The map label for this gene is 147674583
Identifier: 147674583
GI number: 147674583
Start: 2344335
End: 2346944
Strand: Reverse
Name: 147674583
Synonym: VC0395_A2198
Alternate gene names: NA
Gene position: 2346944-2344335 (Counterclockwise)
Preceding gene: 147673998
Following gene: 147673532
Centisome position: 77.61
GC content: 50.23
Gene sequence:
>2610_bases ATGGAAATGAGAACAACCCCGAATTTAACGCGCTCAACGTTAGCTTTAGCGATTAGTTTTGGCTTAGTGGCGCCAAGCTA CGCTGACCTATTGATTTCTCAATACGTTGAAGGCAGTAGCTTCAATAAAGCGATTGAAATTGCCAACACGTCCGATCAAA CGGTGAGCCTGAATGGCTACCAACTGGCGATGTCGACCAACGGCAGCGGCACTTGGGATAAAACTTTACCGCTCGATGGC CAAGTGATTGCGGCGCGCGATGTGCTGGTGATTGCCCACGGTAGCGCCAATAGTGCGATACTGGCGACCGCCGACCTAAC CAACAACACAGTGGTTAACTTTAATGGCAATGATCCGATTGCGCTGCTTAATAGCGATGGTTCGGTGCATGACGTGGTCG GCAGTATGGGCGGCGCAGATTTTGCGAAAGACAACACGCTCGCCAGAACAACACTCACCCCAAGCGCTACTTACCAAGCT TCCGATTGGGCGACCCAAGGCAAAGACAATATTGATGGGCTTGGCGCACTGGATACCACCACGCCACCGAGTGCATTCAA TTGTACGCTAGATGGTGCTGAACCAAGCTTTACCACCATCCAACAAATTCAAGGTGAAGGCAGTACTTCTCCCTATATCC AAGGCTATCCCTACATCACCAATGAGGATTTCTTTGTCAAAGGTGTGGTGAGTGCAGTAACGACAGGACTGACTAAAGGC TTCTATCTGCAATCGCTGGAAGATGACTACAACCCGAATACCTCAGAAGGCCTGTTCGTGTTTACCAACCAAAGCAGTTC GGACTTAGCACCGGGCGATGTGGTGTGCGTGAAAGGCAAAGTGCAGGAGTATTACAACCTGACGCAGCTCAAAGCGGAAA ACAATCAGTGGGTGAAACAAGGCCAGCAAGCTGCGCCACAAGCGCAAGCCATCGAGATCTTACCTTCCGATGAACACTTT GCTCAGACGCTAGAGCGTTACGAAGGCATGCTAGTGAAAACCACACCTGAGCTGGATATGCGTGTGACTCGCACCTTTGG TTATGACTATGCTTCGCGCCGTAACAACATGGTGCTGGCACAAGGTCGCATCAATATGCAGCCAAACCAGCAGCATCCTG CCGGTTCAGAGCAAGCTTCGCAGCAGAAGCTGGATAACGCGCAGCGCCGCTTGTTTGTGGAATCCGATGCCAAAGCACCT GATGGACAAATTCCGTATTACCCGACATTTGGCCGCACCGATGTCGATCAAGATGGTTCAACCGAAGACTATATCCGAAT TGATGATACGGTTTCAGGCCTCGAAGGGGTTGTGAGCTACAGCTATAACGAATATCGCCTGATTGCAACCAACACCATCT CGGCAGAAAATCTGGTGCATAACGCACCGCGTCAAGTCAAGCCAGATCTGGATGAAGGCGATCTGCGCATTGCCACGTTC AACGTACTCAACTACTTCAACTCGCCGTTTGGTGGTGATGCTAACCAACATGGGGATAACCGTGGCGCCAACAATCTGGC TGAATTTGAAGTGCAGCAAGCCAAGATTGTGAATGCGATTGTTCGTTTGGATGCCGATATCGTGGGTTTGATGGAAATTG AGAACAACGGCTTTGGTGAAGGTTCGGCGATTGCGCAATTGGTGAATCAGATCAATAGCCAAATCGCGGATAAGAAAAAA CACTACCGCTTTGTGGAGATTGACTCGAATGGTGATGGCAAAACCGATGCTGCCGATTCACTGGGTACTGATGTGATCAC CACAGGTGTTATCTATCGCGATAAAGTGGTGAAGCTGGCGCAAAATCGTGTCATCCCAATGCCAAGCCAGCAAGCACCAG AGGTGATAAATGCCAACGGTAAAGTGATTGAAGATGGCAAAAACTATCAGCGTGATACGCTTGCCCCAACCTTTAAAGTC AAAGGTGGCAACGAGAAAATCACTGTCGCGGTGAATCACTTCAAATCGAAAGGATCAGCGTGTTGGGAAGATGCCGCGCC CGTTGAGCAAGGCGGACAAGCAGGCAAAGATCTCGATTACCAAGGCGCATGTGAAAACTTCCGCGTCGCCGCCGCGGTAG CGTTGGGTGATGCGCTGGCGAAAATCGATGGGCACAAAGTGATTCTCGGTGATATGAACTCGTACGGCATGGAAGATCCT ATGCTGGTGCTGACGGACTACACACCAGAGAAATACGGCAAAACCATTCGCGCCGCACGCAATACCTACATTGCCGGTGT GGAGCAGTTTGGAGATTCAGGCGCAGAGATCAAACACAGCTACGGTTATCTCAACGCAGTTGCAATGAAACATCCAGACA GTTGGAGCTACTCATTTAATGATGAAGTCGGCGCGTTGGATCATCTGTTAGTCAGTCCAAGCCTGAAACATAAAGTCGTG GATGCGACCGATTGGCACATTAACGGTGCAGAATCGACCTTGTTTGACTACAACGATGAGTTCAAAGGCAACCTGCCGAA ATACAAGGATCAATTCCGCGCCTCAGATCATGACCCAGCGGTACTGGAGCTTAACATCTACGGTGGTTCATTAGGTTTAG GCGCACTGCTTGGCTTATTGGGACTTGGTATTTGGCGCCGCCGTCGCTAG
Upstream 100 bases:
>100_bases AGTAACACTCATCGCGTAAAGTCGTTTTTCTTTAACACAATACTGGTTCAATACACCCTGTTTTGTCTGTTAACCGCAAA TAGGGAGGAGAAGGTACATC
Downstream 100 bases:
>100_bases AAAGTGGCATTTTTGATAAACCAAAGGCTAGCGTAGTACGCTAGCCTTTTTAGTTTCTTACGTTGGTGGTGTGAACTTAC TGCGCGTCGTGCAGTACGCT
Product: hypothetical protein
Products: NA
Alternate protein names: Extracellular Nuclease; Nuclease; Endonuclease/Exonuclease/Phosphatase Family Protein; 5-Nucleotidase Domain Protein; Endonuclease I; 5-Nucleotidase Domain-Containing Protein; Extracellular Nuclease-Like Protein; Endonuclease/Exonuclease/Phosphatase Family; Extracellular Ribonuclease/Nuclease Fusion Protein; 5-Nucleotidase; PKD Domain-Containing Protein; Exported Nuclease; Outer Membrane Adhesin Like Proteiin; Extracellular Ribonuclease; LPXTG-Motif Cell Wall Anchor Domain Protein; Calcineurin-Like Phosphoesterase; Extracellular Nuclease-Like; Glutamate-Cysteine Ligase/Putative Amino Acid Ligase; DNA/RNA Non-Specific Endonuclease; Extracellular Nuclease/Phosphatase; 50S Ribosomal Type B; 5-Nucleotidase Family Protein
Number of amino acids: Translated: 869; Mature: 869
Protein sequence:
>869_residues MEMRTTPNLTRSTLALAISFGLVAPSYADLLISQYVEGSSFNKAIEIANTSDQTVSLNGYQLAMSTNGSGTWDKTLPLDG QVIAARDVLVIAHGSANSAILATADLTNNTVVNFNGNDPIALLNSDGSVHDVVGSMGGADFAKDNTLARTTLTPSATYQA SDWATQGKDNIDGLGALDTTTPPSAFNCTLDGAEPSFTTIQQIQGEGSTSPYIQGYPYITNEDFFVKGVVSAVTTGLTKG FYLQSLEDDYNPNTSEGLFVFTNQSSSDLAPGDVVCVKGKVQEYYNLTQLKAENNQWVKQGQQAAPQAQAIEILPSDEHF AQTLERYEGMLVKTTPELDMRVTRTFGYDYASRRNNMVLAQGRINMQPNQQHPAGSEQASQQKLDNAQRRLFVESDAKAP DGQIPYYPTFGRTDVDQDGSTEDYIRIDDTVSGLEGVVSYSYNEYRLIATNTISAENLVHNAPRQVKPDLDEGDLRIATF NVLNYFNSPFGGDANQHGDNRGANNLAEFEVQQAKIVNAIVRLDADIVGLMEIENNGFGEGSAIAQLVNQINSQIADKKK HYRFVEIDSNGDGKTDAADSLGTDVITTGVIYRDKVVKLAQNRVIPMPSQQAPEVINANGKVIEDGKNYQRDTLAPTFKV KGGNEKITVAVNHFKSKGSACWEDAAPVEQGGQAGKDLDYQGACENFRVAAAVALGDALAKIDGHKVILGDMNSYGMEDP MLVLTDYTPEKYGKTIRAARNTYIAGVEQFGDSGAEIKHSYGYLNAVAMKHPDSWSYSFNDEVGALDHLLVSPSLKHKVV DATDWHINGAESTLFDYNDEFKGNLPKYKDQFRASDHDPAVLELNIYGGSLGLGALLGLLGLGIWRRRR
Sequences:
>Translated_869_residues MEMRTTPNLTRSTLALAISFGLVAPSYADLLISQYVEGSSFNKAIEIANTSDQTVSLNGYQLAMSTNGSGTWDKTLPLDG QVIAARDVLVIAHGSANSAILATADLTNNTVVNFNGNDPIALLNSDGSVHDVVGSMGGADFAKDNTLARTTLTPSATYQA SDWATQGKDNIDGLGALDTTTPPSAFNCTLDGAEPSFTTIQQIQGEGSTSPYIQGYPYITNEDFFVKGVVSAVTTGLTKG FYLQSLEDDYNPNTSEGLFVFTNQSSSDLAPGDVVCVKGKVQEYYNLTQLKAENNQWVKQGQQAAPQAQAIEILPSDEHF AQTLERYEGMLVKTTPELDMRVTRTFGYDYASRRNNMVLAQGRINMQPNQQHPAGSEQASQQKLDNAQRRLFVESDAKAP DGQIPYYPTFGRTDVDQDGSTEDYIRIDDTVSGLEGVVSYSYNEYRLIATNTISAENLVHNAPRQVKPDLDEGDLRIATF NVLNYFNSPFGGDANQHGDNRGANNLAEFEVQQAKIVNAIVRLDADIVGLMEIENNGFGEGSAIAQLVNQINSQIADKKK HYRFVEIDSNGDGKTDAADSLGTDVITTGVIYRDKVVKLAQNRVIPMPSQQAPEVINANGKVIEDGKNYQRDTLAPTFKV KGGNEKITVAVNHFKSKGSACWEDAAPVEQGGQAGKDLDYQGACENFRVAAAVALGDALAKIDGHKVILGDMNSYGMEDP MLVLTDYTPEKYGKTIRAARNTYIAGVEQFGDSGAEIKHSYGYLNAVAMKHPDSWSYSFNDEVGALDHLLVSPSLKHKVV DATDWHINGAESTLFDYNDEFKGNLPKYKDQFRASDHDPAVLELNIYGGSLGLGALLGLLGLGIWRRRR >Mature_869_residues MEMRTTPNLTRSTLALAISFGLVAPSYADLLISQYVEGSSFNKAIEIANTSDQTVSLNGYQLAMSTNGSGTWDKTLPLDG QVIAARDVLVIAHGSANSAILATADLTNNTVVNFNGNDPIALLNSDGSVHDVVGSMGGADFAKDNTLARTTLTPSATYQA SDWATQGKDNIDGLGALDTTTPPSAFNCTLDGAEPSFTTIQQIQGEGSTSPYIQGYPYITNEDFFVKGVVSAVTTGLTKG FYLQSLEDDYNPNTSEGLFVFTNQSSSDLAPGDVVCVKGKVQEYYNLTQLKAENNQWVKQGQQAAPQAQAIEILPSDEHF AQTLERYEGMLVKTTPELDMRVTRTFGYDYASRRNNMVLAQGRINMQPNQQHPAGSEQASQQKLDNAQRRLFVESDAKAP DGQIPYYPTFGRTDVDQDGSTEDYIRIDDTVSGLEGVVSYSYNEYRLIATNTISAENLVHNAPRQVKPDLDEGDLRIATF NVLNYFNSPFGGDANQHGDNRGANNLAEFEVQQAKIVNAIVRLDADIVGLMEIENNGFGEGSAIAQLVNQINSQIADKKK HYRFVEIDSNGDGKTDAADSLGTDVITTGVIYRDKVVKLAQNRVIPMPSQQAPEVINANGKVIEDGKNYQRDTLAPTFKV KGGNEKITVAVNHFKSKGSACWEDAAPVEQGGQAGKDLDYQGACENFRVAAAVALGDALAKIDGHKVILGDMNSYGMEDP MLVLTDYTPEKYGKTIRAARNTYIAGVEQFGDSGAEIKHSYGYLNAVAMKHPDSWSYSFNDEVGALDHLLVSPSLKHKVV DATDWHINGAESTLFDYNDEFKGNLPKYKDQFRASDHDPAVLELNIYGGSLGLGALLGLLGLGIWRRRR
Specific function: Unknown
COG id: COG2374
COG function: function code R; Predicted extracellular nuclease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 94421; Mature: 94421
Theoretical pI: Translated: 4.54; Mature: 4.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEMRTTPNLTRSTLALAISFGLVAPSYADLLISQYVEGSSFNKAIEIANTSDQTVSLNGY CCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEECCE QLAMSTNGSGTWDKTLPLDGQVIAARDVLVIAHGSANSAILATADLTNNTVVNFNGNDPI EEEEECCCCCCCCCCCCCCCEEEEECEEEEEEECCCCCEEEEEEECCCCEEEEECCCCCE ALLNSDGSVHDVVGSMGGADFAKDNTLARTTLTPSATYQASDWATQGKDNIDGLGALDTT EEECCCCCHHHHHHCCCCCCCCCCCCEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCC TPPSAFNCTLDGAEPSFTTIQQIQGEGSTSPYIQGYPYITNEDFFVKGVVSAVTTGLTKG CCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCEECCCEECCCCHHHHHHHHHHHHHHHCC FYLQSLEDDYNPNTSEGLFVFTNQSSSDLAPGDVVCVKGKVQEYYNLTQLKAENNQWVKQ HHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEECCHHHHHCHHEEECCCCHHHHH GQQAAPQAQAIEILPSDEHFAQTLERYEGMLVKTTPELDMRVTRTFGYDYASRRNNMVLA HHHCCCCCEEEEECCCCHHHHHHHHHHCCEEEEECCCCCEEEEEECCCCHHHCCCCEEEE QGRINMQPNQQHPAGSEQASQQKLDNAQRRLFVESDAKAPDGQIPYYPTFGRTDVDQDGS ECEECCCCCCCCCCCCHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC TEDYIRIDDTVSGLEGVVSYSYNEYRLIATNTISAENLVHNAPRQVKPDLDEGDLRIATF CCCEEEECCHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCCCCCCCEEEEEE NVLNYFNSPFGGDANQHGDNRGANNLAEFEVQQAKIVNAIVRLDADIVGLMEIENNGFGE EHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC GSAIAQLVNQINSQIADKKKHYRFVEIDSNGDGKTDAADSLGTDVITTGVIYRDKVVKLA HHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCHHHCCCHHHHHCEEHHHHHHHHH QNRVIPMPSQQAPEVINANGKVIEDGKNYQRDTLAPTFKVKGGNEKITVAVNHFKSKGSA HCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCC CWEDAAPVEQGGQAGKDLDYQGACENFRVAAAVALGDALAKIDGHKVILGDMNSYGMEDP CCCCCCCHHHCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCCEEEEECCCCCCCCCC MLVLTDYTPEKYGKTIRAARNTYIAGVEQFGDSGAEIKHSYGYLNAVAMKHPDSWSYSFN EEEEECCCHHHHHHHHHHHHHHHEEEHHHHCCCCCCEECCCCEEEEEEEECCCCCCCCCC DEVGALDHLLVSPSLKHKVVDATDWHINGAESTLFDYNDEFKGNLPKYKDQFRASDHDPA CCCCHHHHHHCCCCCCCEEECCCCCEECCCCCEEECCCCCCCCCCCCHHHHHCCCCCCCE VLELNIYGGSLGLGALLGLLGLGIWRRRR EEEEEEECCCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure MEMRTTPNLTRSTLALAISFGLVAPSYADLLISQYVEGSSFNKAIEIANTSDQTVSLNGY CCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEECCE QLAMSTNGSGTWDKTLPLDGQVIAARDVLVIAHGSANSAILATADLTNNTVVNFNGNDPI EEEEECCCCCCCCCCCCCCCEEEEECEEEEEEECCCCCEEEEEEECCCCEEEEECCCCCE ALLNSDGSVHDVVGSMGGADFAKDNTLARTTLTPSATYQASDWATQGKDNIDGLGALDTT EEECCCCCHHHHHHCCCCCCCCCCCCEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCC TPPSAFNCTLDGAEPSFTTIQQIQGEGSTSPYIQGYPYITNEDFFVKGVVSAVTTGLTKG CCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCEECCCEECCCCHHHHHHHHHHHHHHHCC FYLQSLEDDYNPNTSEGLFVFTNQSSSDLAPGDVVCVKGKVQEYYNLTQLKAENNQWVKQ HHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEECCHHHHHCHHEEECCCCHHHHH GQQAAPQAQAIEILPSDEHFAQTLERYEGMLVKTTPELDMRVTRTFGYDYASRRNNMVLA HHHCCCCCEEEEECCCCHHHHHHHHHHCCEEEEECCCCCEEEEEECCCCHHHCCCCEEEE QGRINMQPNQQHPAGSEQASQQKLDNAQRRLFVESDAKAPDGQIPYYPTFGRTDVDQDGS ECEECCCCCCCCCCCCHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC TEDYIRIDDTVSGLEGVVSYSYNEYRLIATNTISAENLVHNAPRQVKPDLDEGDLRIATF CCCEEEECCHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHCCCCCCCCCCCCCCEEEEEE NVLNYFNSPFGGDANQHGDNRGANNLAEFEVQQAKIVNAIVRLDADIVGLMEIENNGFGE EHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC GSAIAQLVNQINSQIADKKKHYRFVEIDSNGDGKTDAADSLGTDVITTGVIYRDKVVKLA HHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCHHHCCCHHHHHCEEHHHHHHHHH QNRVIPMPSQQAPEVINANGKVIEDGKNYQRDTLAPTFKVKGGNEKITVAVNHFKSKGSA HCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCC CWEDAAPVEQGGQAGKDLDYQGACENFRVAAAVALGDALAKIDGHKVILGDMNSYGMEDP CCCCCCCHHHCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCCEEEEECCCCCCCCCC MLVLTDYTPEKYGKTIRAARNTYIAGVEQFGDSGAEIKHSYGYLNAVAMKHPDSWSYSFN EEEEECCCHHHHHHHHHHHHHHHEEEHHHHCCCCCCEECCCCEEEEEEEECCCCCCCCCC DEVGALDHLLVSPSLKHKVVDATDWHINGAESTLFDYNDEFKGNLPKYKDQFRASDHDPA CCCCHHHHHHCCCCCCCEEECCCCCEECCCCCEEECCCCCCCCCCCCHHHHHCCCCCCCE VLELNIYGGSLGLGALLGLLGLGIWRRRR EEEEEEECCCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA