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The map label for this gene is flgD [H]

Identifier: 147674438

GI number: 147674438

Start: 1898802

End: 1899509

Strand: Reverse

Name: flgD [H]

Synonym: VC0395_A1790

Alternate gene names: 147674438

Gene position: 1899509-1898802 (Counterclockwise)

Preceding gene: 147675208

Following gene: 147674037

Centisome position: 62.81

GC content: 48.16

Gene sequence:

>708_bases
ATGGCCGGAGTCAATAATGTTGGTCAAAGCGGCTTGTCCTATATTGATCAGCTTAAAGCTCTTCAAGAGCAGAAAAAGCC
GGATGAAACCACAGGGCAGAAATCCCTGAAACAAGAAGACTTTCTTTCTTTGCTGACCAAGCAGTTAGCACAGCAAGATC
CGTTCAAACCCGTGAGTAACGATCAGATGATTGCGCAGATGGCTTCATTTGCGACCGTTGATGGCATTGGCAAGATGAAC
ACTCAGTTTGAGAGTCTCAACTCATCAATGACCTCTAACCAAGCGCTGCAAGCGTCATCACTGGTAGGGCGTGACGTGCT
AGTGCCGGGGGCGGCAGGAATGAAAAAGCCTGATGGCGGTATGGCGGCAATGGTGAAACTGCCGCAGTCGATCGATAACT
TGTTCATCCGTATTGAGAATGAAGCTGGTCAATTGGTACGAACCTTTGACGTCGGTGCCAAATCTTCTGGTGATAACCGC
GTTGAATGGGATGGAAAAGATCAGAACGGTAATCCGTTGCCGGGTGGCAAATACAAAGTGAAAGCGTCTGGCTTGCTGGA
TGGAGAGAGTAAAGAGTTTGAAGTCTCCACGTATGCGAACGTCAACAGCGTTTTGTTAGGCAAAGGCGATGGTAACGTAC
TACTCAATCTGGCTGGTTTTGATGCACCAGTTCGACTTGCTGAAGTACTTGAAGTAGGCAAAGCGTGA

Upstream 100 bases:

>100_bases
CCTCTCGTTCTTATCAAACCAACGTGCAGGTGGCGGATGCCAGTAAACAGATGCTGCTGCGTACGCTGCAGATGGGTCAA
TAAGGATAAGGAGTTAACGT

Downstream 100 bases:

>100_bases
TAGCGCTAGCTAGATAGGAGAATTACTCATGTCATATGTCTCTCTTAGTGGTTTATCCGCCGCGCAGATGGATTTAAATA
CCACCAGTAACAACATTGCG

Product: flagellar basal body rod modification protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MAGVNNVGQSGLSYIDQLKALQEQKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMN
TQFESLNSSMTSNQALQASSLVGRDVLVPGAAGMKKPDGGMAAMVKLPQSIDNLFIRIENEAGQLVRTFDVGAKSSGDNR
VEWDGKDQNGNPLPGGKYKVKASGLLDGESKEFEVSTYANVNSVLLGKGDGNVLLNLAGFDAPVRLAEVLEVGKA

Sequences:

>Translated_235_residues
MAGVNNVGQSGLSYIDQLKALQEQKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMN
TQFESLNSSMTSNQALQASSLVGRDVLVPGAAGMKKPDGGMAAMVKLPQSIDNLFIRIENEAGQLVRTFDVGAKSSGDNR
VEWDGKDQNGNPLPGGKYKVKASGLLDGESKEFEVSTYANVNSVLLGKGDGNVLLNLAGFDAPVRLAEVLEVGKA
>Mature_234_residues
AGVNNVGQSGLSYIDQLKALQEQKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPVSNDQMIAQMASFATVDGIGKMNT
QFESLNSSMTSNQALQASSLVGRDVLVPGAAGMKKPDGGMAAMVKLPQSIDNLFIRIENEAGQLVRTFDVGAKSSGDNRV
EWDGKDQNGNPLPGGKYKVKASGLLDGESKEFEVSTYANVNSVLLGKGDGNVLLNLAGFDAPVRLAEVLEVGKA

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=153, Percent_Identity=36.6013071895425, Blast_Score=107, Evalue=6e-25,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 24995; Mature: 24863

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGVNNVGQSGLSYIDQLKALQEQKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPVSN
CCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
DQMIAQMASFATVDGIGKMNTQFESLNSSMTSNQALQASSLVGRDVLVPGAAGMKKPDGG
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCC
MAAMVKLPQSIDNLFIRIENEAGQLVRTFDVGAKSSGDNRVEWDGKDQNGNPLPGGKYKV
HHHHHHHHHHHCEEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCEEE
KASGLLDGESKEFEVSTYANVNSVLLGKGDGNVLLNLAGFDAPVRLAEVLEVGKA
EECCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
AGVNNVGQSGLSYIDQLKALQEQKKPDETTGQKSLKQEDFLSLLTKQLAQQDPFKPVSN
CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
DQMIAQMASFATVDGIGKMNTQFESLNSSMTSNQALQASSLVGRDVLVPGAAGMKKPDGG
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCC
MAAMVKLPQSIDNLFIRIENEAGQLVRTFDVGAKSSGDNRVEWDGKDQNGNPLPGGKYKV
HHHHHHHHHHHCEEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCEEE
KASGLLDGESKEFEVSTYANVNSVLLGKGDGNVLLNLAGFDAPVRLAEVLEVGKA
EECCCCCCCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]