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The map label for this gene is secB

Identifier: 147674386

GI number: 147674386

Start: 2378151

End: 2378615

Strand: Reverse

Name: secB

Synonym: VC0395_A2227

Alternate gene names: 147674386

Gene position: 2378615-2378151 (Counterclockwise)

Preceding gene: 147675092

Following gene: 147673990

Centisome position: 78.66

GC content: 49.68

Gene sequence:

>465_bases
ATGGCTGAAGCAGCACAAGCCCCACAACAACAGTTTGCTATCCAACGTATCTATCTAAAAGATGTCTCTTTTGAAGCGCC
AAGCTCACCAGTGATGTTCCAAAAAGAGTGGAACCCAGATGTCAAACTGGATCTCGACACGCAAAGCCGTGAACTGGGCC
AAGGCGTTTACGAAGTGGTACTGCGCCTGACAGTGACTGTGAAAAACGCAGAAGAGACCGCATTCCTGTGTGAAGTACAA
CAAGCGGGTATCTTCAGTGCAGAGCAGATGGAAGCAGGCCAATTGGCCCATTGCTTGGGTGCTTTCTGCCCGAACATCCT
GTTCCCATACGCACGTGAAACCATTTCAAGCCTAGTGGTGAAAGGTACTTTCCCACAACTGAACCTTGCTCCAGTTAACT
TTGACGCGCTGTTCATGAACTACCTGCAACAGCAAGCTCAAGAAGGCGCAACGGCGAACGCATAA

Upstream 100 bases:

>100_bases
ACCACGTAATGGCTTGCCCACCTAGTGATCGCACACACTCTCAGTTAGTCTCAGGACACATTGACCTTTGAACCGAATTA
TCTGAATTAAGGATGAAATC

Downstream 100 bases:

>100_bases
TTCGCGCGATTGAGTTTTCAGTAAGAATAAAATGCACAGCGCCACCGCGATGTGCATTTTTTGTTTATCACTCGAGTATT
GGTTTTTGCACTCTTTATCT

Product: preprotein translocase subunit SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 153

Protein sequence:

>154_residues
MAEAAQAPQQQFAIQRIYLKDVSFEAPSSPVMFQKEWNPDVKLDLDTQSRELGQGVYEVVLRLTVTVKNAEETAFLCEVQ
QAGIFSAEQMEAGQLAHCLGAFCPNILFPYARETISSLVVKGTFPQLNLAPVNFDALFMNYLQQQAQEGATANA

Sequences:

>Translated_154_residues
MAEAAQAPQQQFAIQRIYLKDVSFEAPSSPVMFQKEWNPDVKLDLDTQSRELGQGVYEVVLRLTVTVKNAEETAFLCEVQ
QAGIFSAEQMEAGQLAHCLGAFCPNILFPYARETISSLVVKGTFPQLNLAPVNFDALFMNYLQQQAQEGATANA
>Mature_153_residues
AEAAQAPQQQFAIQRIYLKDVSFEAPSSPVMFQKEWNPDVKLDLDTQSRELGQGVYEVVLRLTVTVKNAEETAFLCEVQQ
AGIFSAEQMEAGQLAHCLGAFCPNILFPYARETISSLVVKGTFPQLNLAPVNFDALFMNYLQQQAQEGATANA

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family

Homologues:

Organism=Escherichia coli, GI1790038, Length=138, Percent_Identity=73.9130434782609, Blast_Score=221, Evalue=2e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECB_VIBC3 (A5F4Y6)

Other databases:

- EMBL:   CP000627
- EMBL:   CP001235
- ProteinModelPortal:   A5F4Y6
- SMR:   A5F4Y6
- STRING:   A5F4Y6
- GenomeReviews:   CP000627_GR
- GenomeReviews:   CP001235_GR
- KEGG:   vco:VC0395_A2227
- eggNOG:   COG1952
- HOGENOM:   HBG294212
- OMA:   GFPPLMI
- ProtClustDB:   PRK05751
- BioCyc:   VCHO345073:VC0395_A2227-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00821
- InterPro:   IPR003708
- Gene3D:   G3DSA:3.10.420.10
- PRINTS:   PR01594
- TIGRFAMs:   TIGR00809

Pfam domain/function: PF02556 SecB; SSF54611 SecB

EC number: NA

Molecular weight: Translated: 17036; Mature: 16904

Theoretical pI: Translated: 4.22; Mature: 4.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEAAQAPQQQFAIQRIYLKDVSFEAPSSPVMFQKEWNPDVKLDLDTQSRELGQGVYEVV
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHH
LRLTVTVKNAEETAFLCEVQQAGIFSAEQMEAGQLAHCLGAFCPNILFPYARETISSLVV
HHHHHEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KGTFPQLNLAPVNFDALFMNYLQQQAQEGATANA
CCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
AEAAQAPQQQFAIQRIYLKDVSFEAPSSPVMFQKEWNPDVKLDLDTQSRELGQGVYEVV
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHH
LRLTVTVKNAEETAFLCEVQQAGIFSAEQMEAGQLAHCLGAFCPNILFPYARETISSLVV
HHHHHEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KGTFPQLNLAPVNFDALFMNYLQQQAQEGATANA
CCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA