| Definition | Vibrio cholerae O395 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_009457 |
| Length | 3,024,069 |
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The map label for this gene is 147674089
Identifier: 147674089
GI number: 147674089
Start: 1454553
End: 1456004
Strand: Reverse
Name: 147674089
Synonym: VC0395_A1360
Alternate gene names: NA
Gene position: 1456004-1454553 (Counterclockwise)
Preceding gene: 147673520
Following gene: 147675032
Centisome position: 48.15
GC content: 40.56
Gene sequence:
>1452_bases GTGAGTCTAAATATAAAAAAGCTCAAAGTTAGTTTGCCTGCTAATCCTTTTGGTCAAGCCATCAAGGACTTTGCACATCT ATCGAGTCAGCTAGAAGTGCTTTCTAAGAGTGCCGGTATTGAAAACAATAAGTTCCGAACTGCATATGGAGAAGTATGTA ATGCGCTTGCCTCTAAGAAAAGAGTTGAGGACGTTATAGATAGCTCTGTACACGTTCGCGCCTTAGCTCTTTCGCTACAT ACGGATGCGAAGAAAAATGTCAGCTTTACGCGCAGATTGCTTAATAAAATTACAGAAATTGTAAAAAAACCAAGCTCTTT AGTCATAGAGTCGTTTTATCAGCATTTCTTATCAGAGTATGACCGACTGGCAGACTTGGAAGCTACAGCAGACTGGTTGT TGGAGGCTAAAAGGCTGCGAGGCAATGATGAGCAGTTTGATGAAAATATATTGTCAACCAATGGCCTCAAGTGGCTTGCG GAAAGGGCTATTCAAAATAATGTCGATTTTGATCATTTAATTGCGGAGATGAAGCTGGAACGTTATGCAAATGGCAGATA TTTAACGGCGGCTAAAGGCATCTACTATATTGAGCAGTTAAACACTATACCATTAGGCCAAGATCATCCTCTCCTAGAGG AGGTTCAAAAAACGGTGGTTTTTGATTCTCGATATGACTCTGAAAGTTTGTTAGGGCATCAAATTCTTAGAATTTTGATT GGCCGATCGATAGGTTCTCACATCAGTGAGCCTTGGATGAATGTGATCTTAGCAATTGGCGGTGACCCACGAGTACCAAG TTCAAATCCAAGATATATTAAGTGGTGGAAGAGTTTAGAACCAAATCTGGTTCAAGCTGTTCTCGGATGGTTATCAAAAC TAGACTTGAAGTTGTTTCTGGAAGCGTTGGAGGATTATTCTTACTCTTCAGCTAATTACGAGCTACAGAGAATGTACCCA TCTCGGAAAAGTTTCTTAGAGGGGATGTTCGATGCGGGGGTTATTTCAAATACCCGGCTTTATTTGAGTCTGGATGCTGC AAGGTATTTGAAGAGAAATTATGACCCTAAGCACTTGCCAAATTTCTCTACTGTTAAAGATGGTGACAAATCGATAATTT ATGTGCAAATGAACGGCGCTCACATGGTTGAGGGGAGCCATAGTTGTTATTTGTGGTTGTACCGGTATCTTGACCCTTCC GTTTGTGTGTTTAACTATAACATTGATAGTCCTACGTACTCACAACTCACAATCGGTATAAACAATCAAATGTCCAGATT GTCATCTGGTGCAGTTGCTAAAATAACGCACTCTCCGAGTGGTTACGCATGGCAACGAAAAGCACTTATAGCACTAAGAG AGTTAGGTGTTAAATTGACGCCGAAAGATGTGCTTTCGAATGAAGATTATATTGATTTTAAACAACGTTATGGGGTGCGA GAGTGGAGTTAA
Upstream 100 bases:
>100_bases ATGAGGCGAATCAGCAAGAAAAGAGCCAGAATAGGCGCATTGATATTCGATTTACAGTTAAGAAACCATCTATTGCTGAG CTCGAGAGGATTGTTGGACC
Downstream 100 bases:
>100_bases CCTCTTTAATCAGCAAGTTCTTCTCTAGCTCAGATAAAACGTCTCAGTTTGAACTCATTTGTGATGATAGTCTTGATTTT GCAACTTCCAGAAAAACTCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 483; Mature: 482
Protein sequence:
>483_residues MSLNIKKLKVSLPANPFGQAIKDFAHLSSQLEVLSKSAGIENNKFRTAYGEVCNALASKKRVEDVIDSSVHVRALALSLH TDAKKNVSFTRRLLNKITEIVKKPSSLVIESFYQHFLSEYDRLADLEATADWLLEAKRLRGNDEQFDENILSTNGLKWLA ERAIQNNVDFDHLIAEMKLERYANGRYLTAAKGIYYIEQLNTIPLGQDHPLLEEVQKTVVFDSRYDSESLLGHQILRILI GRSIGSHISEPWMNVILAIGGDPRVPSSNPRYIKWWKSLEPNLVQAVLGWLSKLDLKLFLEALEDYSYSSANYELQRMYP SRKSFLEGMFDAGVISNTRLYLSLDAARYLKRNYDPKHLPNFSTVKDGDKSIIYVQMNGAHMVEGSHSCYLWLYRYLDPS VCVFNYNIDSPTYSQLTIGINNQMSRLSSGAVAKITHSPSGYAWQRKALIALRELGVKLTPKDVLSNEDYIDFKQRYGVR EWS
Sequences:
>Translated_483_residues MSLNIKKLKVSLPANPFGQAIKDFAHLSSQLEVLSKSAGIENNKFRTAYGEVCNALASKKRVEDVIDSSVHVRALALSLH TDAKKNVSFTRRLLNKITEIVKKPSSLVIESFYQHFLSEYDRLADLEATADWLLEAKRLRGNDEQFDENILSTNGLKWLA ERAIQNNVDFDHLIAEMKLERYANGRYLTAAKGIYYIEQLNTIPLGQDHPLLEEVQKTVVFDSRYDSESLLGHQILRILI GRSIGSHISEPWMNVILAIGGDPRVPSSNPRYIKWWKSLEPNLVQAVLGWLSKLDLKLFLEALEDYSYSSANYELQRMYP SRKSFLEGMFDAGVISNTRLYLSLDAARYLKRNYDPKHLPNFSTVKDGDKSIIYVQMNGAHMVEGSHSCYLWLYRYLDPS VCVFNYNIDSPTYSQLTIGINNQMSRLSSGAVAKITHSPSGYAWQRKALIALRELGVKLTPKDVLSNEDYIDFKQRYGVR EWS >Mature_482_residues SLNIKKLKVSLPANPFGQAIKDFAHLSSQLEVLSKSAGIENNKFRTAYGEVCNALASKKRVEDVIDSSVHVRALALSLHT DAKKNVSFTRRLLNKITEIVKKPSSLVIESFYQHFLSEYDRLADLEATADWLLEAKRLRGNDEQFDENILSTNGLKWLAE RAIQNNVDFDHLIAEMKLERYANGRYLTAAKGIYYIEQLNTIPLGQDHPLLEEVQKTVVFDSRYDSESLLGHQILRILIG RSIGSHISEPWMNVILAIGGDPRVPSSNPRYIKWWKSLEPNLVQAVLGWLSKLDLKLFLEALEDYSYSSANYELQRMYPS RKSFLEGMFDAGVISNTRLYLSLDAARYLKRNYDPKHLPNFSTVKDGDKSIIYVQMNGAHMVEGSHSCYLWLYRYLDPSV CVFNYNIDSPTYSQLTIGINNQMSRLSSGAVAKITHSPSGYAWQRKALIALRELGVKLTPKDVLSNEDYIDFKQRYGVRE WS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55094; Mature: 54962
Theoretical pI: Translated: 8.79; Mature: 8.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLNIKKLKVSLPANPFGQAIKDFAHLSSQLEVLSKSAGIENNKFRTAYGEVCNALASKK CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH RVEDVIDSSVHVRALALSLHTDAKKNVSFTRRLLNKITEIVKKPSSLVIESFYQHFLSEY HHHHHHCCCCEEEEEEEEHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH DRLADLEATADWLLEAKRLRGNDEQFDENILSTNGLKWLAERAIQNNVDFDHLIAEMKLE HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH RYANGRYLTAAKGIYYIEQLNTIPLGQDHPLLEEVQKTVVFDSRYDSESLLGHQILRILI HHCCCCEEEECCCEEEEHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH GRSIGSHISEPWMNVILAIGGDPRVPSSNPRYIKWWKSLEPNLVQAVLGWLSKLDLKLFL HHHHHHHHHHHHHHEEEEECCCCCCCCCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHH EALEDYSYSSANYELQRMYPSRKSFLEGMFDAGVISNTRLYLSLDAARYLKRNYDPKHLP HHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHCCCCCCCCC NFSTVKDGDKSIIYVQMNGAHMVEGSHSCYLWLYRYLDPSVCVFNYNIDSPTYSQLTIGI CCCCCCCCCCEEEEEEECCCEEECCCCCEEEHHHHHCCCCEEEEEECCCCCCCCEEEEEC NNQMSRLSSGAVAKITHSPSGYAWQRKALIALRELGVKLTPKDVLSNEDYIDFKQRYGVR CHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHHCCCC EWS CCC >Mature Secondary Structure SLNIKKLKVSLPANPFGQAIKDFAHLSSQLEVLSKSAGIENNKFRTAYGEVCNALASKK CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH RVEDVIDSSVHVRALALSLHTDAKKNVSFTRRLLNKITEIVKKPSSLVIESFYQHFLSEY HHHHHHCCCCEEEEEEEEHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH DRLADLEATADWLLEAKRLRGNDEQFDENILSTNGLKWLAERAIQNNVDFDHLIAEMKLE HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH RYANGRYLTAAKGIYYIEQLNTIPLGQDHPLLEEVQKTVVFDSRYDSESLLGHQILRILI HHCCCCEEEECCCEEEEHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH GRSIGSHISEPWMNVILAIGGDPRVPSSNPRYIKWWKSLEPNLVQAVLGWLSKLDLKLFL HHHHHHHHHHHHHHEEEEECCCCCCCCCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHH EALEDYSYSSANYELQRMYPSRKSFLEGMFDAGVISNTRLYLSLDAARYLKRNYDPKHLP HHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHCCCCCCCCC NFSTVKDGDKSIIYVQMNGAHMVEGSHSCYLWLYRYLDPSVCVFNYNIDSPTYSQLTIGI CCCCCCCCCCEEEEEEECCCEEECCCCCEEEHHHHHCCCCEEEEEECCCCCCCCEEEEEC NNQMSRLSSGAVAKITHSPSGYAWQRKALIALRELGVKLTPKDVLSNEDYIDFKQRYGVR CHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHHCCCC EWS CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA