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The map label for this gene is rbn [C]

Identifier: 147674039

GI number: 147674039

Start: 2469076

End: 2469969

Strand: Reverse

Name: rbn [C]

Synonym: VC0395_A2314

Alternate gene names: 147674039

Gene position: 2469969-2469076 (Counterclockwise)

Preceding gene: 147674525

Following gene: 147673087

Centisome position: 81.68

GC content: 46.2

Gene sequence:

>894_bases
ATGAAATTGACTCACTCTTTTATTAAGCAGCAGGCTCGATTGGGGCTGAACTTTTTCCGTTACTTATTGGCACGGATGAA
CCATGATCGAGTCAATGTGAATGCCGGTTATCTGGCTTATATCACCTTACTGTCTATGGTACCCATGTTGACGGTCTTGC
TGTCGATCCTCTCTTCCTTTGCTCTTTTTGCGAACGCTGGAGAAGTAATCCAAGATTTTGTGATCACCCATTTTGTGCCT
GCGGCGGGCGAAGTGGTCAAAACCGCGTTAATCGAGTTTGTTGCCAATACGGGCAAGATGACTGCCGTAGGCGGCGCGTT
TTTGTTTGTTGCCGCCATCATGCTGATTTCCAATATCGATAAAAATTTGAACTATATTTGGCGGGTTCAGCAGAAGCGTC
GCGCGGTGTTTTCGTTTTCCATGTACTGGATGATCCTGACGCTGGGACCAATTTTAGTTGGAGCCAGTATTGCCGCGACT
TCGTATATCACCTCGCTCAAGATTTTAGATAACGAAGCGCTTTCCGGAGTGTATAACCTGTTTTTACGCTGGTTGCCGTT
TGTGCTCTCTTACTGTGCCTTCGTCGGTCTATATCTGCTGGTGCCGAATAAAAAAGTCCACTGGCAGCATGCAATGCTGG
GGGCTTTGATTGCCGCCATCTTGTTTGAGTTAAGCAAAAAAGGCTTTGCCGCTTATATTACTCAGTTTCCTTCTTATCAG
TTGATATACGGCGCTCTTGCTGCGATTCCCATCCTCTTTGTTTGGGTGTATTTATGTTGGTTAATTGTGTTGGTGGGTGC
TGAGGTGACGGCTGCTTTGGGCGAGCGTGAACACTGGAGTGACTCACAAGACATGCTACACTTTGCACCATTACCAAAGA
ATGAAAAAGAATGA

Upstream 100 bases:

>100_bases
GTATTGATGTGCCAATGGCATCGATTGAGCAACGTGTGGCATTTGTGTTAACCGCCTTATCCGTGGCAGGATAACCGCAA
CCCACTGACAAGGATGAGCT

Downstream 100 bases:

>100_bases
AGTAGAGGAAAAACAGAGTGATAGCACTGATCCAACGAGTAAGTGAAGCCGCAGTACGGGTTGATGGTGAAGTGGTCGGC
GCAATTGATAAGGGACTTTT

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MKLTHSFIKQQARLGLNFFRYLLARMNHDRVNVNAGYLAYITLLSMVPMLTVLLSILSSFALFANAGEVIQDFVITHFVP
AAGEVVKTALIEFVANTGKMTAVGGAFLFVAAIMLISNIDKNLNYIWRVQQKRRAVFSFSMYWMILTLGPILVGASIAAT
SYITSLKILDNEALSGVYNLFLRWLPFVLSYCAFVGLYLLVPNKKVHWQHAMLGALIAAILFELSKKGFAAYITQFPSYQ
LIYGALAAIPILFVWVYLCWLIVLVGAEVTAALGEREHWSDSQDMLHFAPLPKNEKE

Sequences:

>Translated_297_residues
MKLTHSFIKQQARLGLNFFRYLLARMNHDRVNVNAGYLAYITLLSMVPMLTVLLSILSSFALFANAGEVIQDFVITHFVP
AAGEVVKTALIEFVANTGKMTAVGGAFLFVAAIMLISNIDKNLNYIWRVQQKRRAVFSFSMYWMILTLGPILVGASIAAT
SYITSLKILDNEALSGVYNLFLRWLPFVLSYCAFVGLYLLVPNKKVHWQHAMLGALIAAILFELSKKGFAAYITQFPSYQ
LIYGALAAIPILFVWVYLCWLIVLVGAEVTAALGEREHWSDSQDMLHFAPLPKNEKE
>Mature_297_residues
MKLTHSFIKQQARLGLNFFRYLLARMNHDRVNVNAGYLAYITLLSMVPMLTVLLSILSSFALFANAGEVIQDFVITHFVP
AAGEVVKTALIEFVANTGKMTAVGGAFLFVAAIMLISNIDKNLNYIWRVQQKRRAVFSFSMYWMILTLGPILVGASIAAT
SYITSLKILDNEALSGVYNLFLRWLPFVLSYCAFVGLYLLVPNKKVHWQHAMLGALIAAILFELSKKGFAAYITQFPSYQ
LIYGALAAIPILFVWVYLCWLIVLVGAEVTAALGEREHWSDSQDMLHFAPLPKNEKE

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family

Homologues:

Organism=Escherichia coli, GI1790319, Length=275, Percent_Identity=45.8181818181818, Blast_Score=247, Evalue=6e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1626_VIBCJ (C3NUE6)

Other databases:

- EMBL:   CP001485
- RefSeq:   YP_002877365.1
- GeneID:   7856112
- GenomeReviews:   CP001485_GR
- KEGG:   vcj:VCD_001626
- OMA:   FLWIYIS
- ProtClustDB:   PRK01637
- HAMAP:   MF_00672
- InterPro:   IPR017039
- InterPro:   IPR004664
- PIRSF:   PIRSF035875
- TIGRFAMs:   TIGR00765

Pfam domain/function: PF03631 Ribonuclease_BN

EC number: 3.1.-.- [C]

Molecular weight: Translated: 33286; Mature: 33286

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x16e8a378)-; HASH(0x1a991260)-; HASH(0x17346124)-; HASH(0x17f8c898)-; HASH(0x1b4456f4)-; HASH(0x1b7f8a08)-;

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLTHSFIKQQARLGLNFFRYLLARMNHDRVNVNAGYLAYITLLSMVPMLTVLLSILSSF
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
ALFANAGEVIQDFVITHFVPAAGEVVKTALIEFVANTGKMTAVGGAFLFVAAIMLISNID
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC
KNLNYIWRVQQKRRAVFSFSMYWMILTLGPILVGASIAATSYITSLKILDNEALSGVYNL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLRWLPFVLSYCAFVGLYLLVPNKKVHWQHAMLGALIAAILFELSKKGFAAYITQFPSYQ
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHH
LIYGALAAIPILFVWVYLCWLIVLVGAEVTAALGEREHWSDSQDMLHFAPLPKNEKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCH
>Mature Secondary Structure
MKLTHSFIKQQARLGLNFFRYLLARMNHDRVNVNAGYLAYITLLSMVPMLTVLLSILSSF
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
ALFANAGEVIQDFVITHFVPAAGEVVKTALIEFVANTGKMTAVGGAFLFVAAIMLISNID
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC
KNLNYIWRVQQKRRAVFSFSMYWMILTLGPILVGASIAATSYITSLKILDNEALSGVYNL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLRWLPFVLSYCAFVGLYLLVPNKKVHWQHAMLGALIAAILFELSKKGFAAYITQFPSYQ
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHH
LIYGALAAIPILFVWVYLCWLIVLVGAEVTAALGEREHWSDSQDMLHFAPLPKNEKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA