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The map label for this gene is ydaM [H]

Identifier: 147673860

GI number: 147673860

Start: 1931323

End: 1932861

Strand: Reverse

Name: ydaM [H]

Synonym: VC0395_A1817

Alternate gene names: 147673860

Gene position: 1932861-1931323 (Counterclockwise)

Preceding gene: 147675197

Following gene: 147674204

Centisome position: 63.92

GC content: 45.22

Gene sequence:

>1539_bases
ATGGTATATGGATTACGTTTCACTCATTACACTCGCTTATTAGAACAAAGGATGCGCTTCTGTTTTCCACTGATGGAGCA
GAAGATTGAAGTAAGCAGTACTAGCAGGATGCTCATTATGACGCGAAAGAAATTTAGTTGGATTCTTGTCACCCTGATTA
TTTTTGGTTTTTTTGTAACGAGCTTGGTCAGCTATAAAGTGGCTCATGACACGCTTGAAGAGCAAATCAATAAAGATTCA
CTGCCATTGACCAGCGATAATATTTATTCGGAAATTCAGCAGGATCTGATCCGTCCGATCTTCATCTCCTCACTAATGGC
TCAAGACACGTTTGTGCGCGAGTGGACTTTGGCGGGAGAGCAAGACCCAGAAAGGATCATCCGTTATTTGCGTGAAATTC
AGCGTCAATATCAAACGATCTCCAGTTTCTATATCTCGGATCGCACCGGTCATTACTACCACTACACAGGCATACTCAAA
CAAGTATCGGAATCGAATCCGAATGATGCTTGGTTTTATCGCGTTAAAAACTCCGCGCCAGATAAGAATTTTGAAGTCAA
TATCGACATAGATACCGCGAATAGCCAACAAACCGTGGTGTTTGTGAATTACAAAGTGTTTGATTTTGAAAATCGTTTTC
TCGGTGTGATTGGGGTTGGGCTGAGCTCTGATGCGGTTTCCGCATTAGTCGAGAAATATCAAAAACGGTATAACCGCCAC
ATCTATTTCATCAATGAGTTGGGAGAGGTGACTTTACACGGATCTCACCATCCGGGGTTTGATCAGATTCAGCAGCGTGA
AGGGCTCAAAACCTTAGCCACTCAAATCCTGACCTCTCCGAGTGTGGGTGCTAGCTATTATGCGGACGGACAGAAAGTCT
ACCTCAATAGCCGTTGGGTCGATGAGTTTCAGTGGTACATCATTGTGGAGCAGAAAGATGAGTTTAATCACGACATCTGG
TTTAAAGCGACATTAGGCAATTTAGCCATCAGTGCTTTTGTGGCGTTGGGAGTGCTTGGTTTAGCGCAAATGAGTTTTCG
AGGCTATCAAAAACGGCTGGAAGATATGGCGGTGCGCGATAAATTGACCGGAGCATACAACCGACAAGTTTTTGAAGAGC
TCGTCGATGACGCTATTTCTTTGGCCAATAAAGAGAGTCACCCTTTAAGTCTGGCTGTGATCGATCTTGACCATTTCAAA
CAGGTGAATGACAACTATGGGCATCCCGCGGGGGATCTGGTTTTACAACGGGTGGTTGCACTGTGTCAGCGTCATATTGC
TCAGGTAGGAACTTTGTGTCGGTGGGGCGGTGAAGAATTTGTGGTTTTGCTGCCGCATATGACGCAGCAAGAAGCCTATC
AGCGTATGGAGAGTATCCGCGCTGAGATTGCTATGCACGCGAGCCAACCACAAGTTACCGTCAGCATTGGTGTGGTGCAA
TACCAGCAGAATGAGAGTTTGTTACATCTATTCAATCGTGCGGATCAAGCTATGTATACCGCGAAAAGCGAAGGGCGTAA
TAAGGTCGTTGGCTTGTGA

Upstream 100 bases:

>100_bases
AAAGTCGCGGATAAATGAATAGCCCTCACAGCACTGATGCATCTATCAGTTCTTTCTAACGCATCACCGAGAGTTAATGG
CAACATAGCCAGCACTCGGT

Downstream 100 bases:

>100_bases
TGGATAATCAAAGTGGGGGAAGCCAAGACTTCCCCATTTTTGTATCAAAGCTCCCCCTAGCTAGGCTAGGGGGTTAAGCT
TGGAGATAAAACGAAATTTA

Product: GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 512; Mature: 512

Protein sequence:

>512_residues
MVYGLRFTHYTRLLEQRMRFCFPLMEQKIEVSSTSRMLIMTRKKFSWILVTLIIFGFFVTSLVSYKVAHDTLEEQINKDS
LPLTSDNIYSEIQQDLIRPIFISSLMAQDTFVREWTLAGEQDPERIIRYLREIQRQYQTISSFYISDRTGHYYHYTGILK
QVSESNPNDAWFYRVKNSAPDKNFEVNIDIDTANSQQTVVFVNYKVFDFENRFLGVIGVGLSSDAVSALVEKYQKRYNRH
IYFINELGEVTLHGSHHPGFDQIQQREGLKTLATQILTSPSVGASYYADGQKVYLNSRWVDEFQWYIIVEQKDEFNHDIW
FKATLGNLAISAFVALGVLGLAQMSFRGYQKRLEDMAVRDKLTGAYNRQVFEELVDDAISLANKESHPLSLAVIDLDHFK
QVNDNYGHPAGDLVLQRVVALCQRHIAQVGTLCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIAMHASQPQVTVSIGVVQ
YQQNESLLHLFNRADQAMYTAKSEGRNKVVGL

Sequences:

>Translated_512_residues
MVYGLRFTHYTRLLEQRMRFCFPLMEQKIEVSSTSRMLIMTRKKFSWILVTLIIFGFFVTSLVSYKVAHDTLEEQINKDS
LPLTSDNIYSEIQQDLIRPIFISSLMAQDTFVREWTLAGEQDPERIIRYLREIQRQYQTISSFYISDRTGHYYHYTGILK
QVSESNPNDAWFYRVKNSAPDKNFEVNIDIDTANSQQTVVFVNYKVFDFENRFLGVIGVGLSSDAVSALVEKYQKRYNRH
IYFINELGEVTLHGSHHPGFDQIQQREGLKTLATQILTSPSVGASYYADGQKVYLNSRWVDEFQWYIIVEQKDEFNHDIW
FKATLGNLAISAFVALGVLGLAQMSFRGYQKRLEDMAVRDKLTGAYNRQVFEELVDDAISLANKESHPLSLAVIDLDHFK
QVNDNYGHPAGDLVLQRVVALCQRHIAQVGTLCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIAMHASQPQVTVSIGVVQ
YQQNESLLHLFNRADQAMYTAKSEGRNKVVGL
>Mature_512_residues
MVYGLRFTHYTRLLEQRMRFCFPLMEQKIEVSSTSRMLIMTRKKFSWILVTLIIFGFFVTSLVSYKVAHDTLEEQINKDS
LPLTSDNIYSEIQQDLIRPIFISSLMAQDTFVREWTLAGEQDPERIIRYLREIQRQYQTISSFYISDRTGHYYHYTGILK
QVSESNPNDAWFYRVKNSAPDKNFEVNIDIDTANSQQTVVFVNYKVFDFENRFLGVIGVGLSSDAVSALVEKYQKRYNRH
IYFINELGEVTLHGSHHPGFDQIQQREGLKTLATQILTSPSVGASYYADGQKVYLNSRWVDEFQWYIIVEQKDEFNHDIW
FKATLGNLAISAFVALGVLGLAQMSFRGYQKRLEDMAVRDKLTGAYNRQVFEELVDDAISLANKESHPLSLAVIDLDHFK
QVNDNYGHPAGDLVLQRVVALCQRHIAQVGTLCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIAMHASQPQVTVSIGVVQ
YQQNESLLHLFNRADQAMYTAKSEGRNKVVGL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=172, Percent_Identity=41.2790697674419, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI1787262, Length=166, Percent_Identity=38.5542168674699, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI145693134, Length=156, Percent_Identity=31.4102564102564, Blast_Score=96, Evalue=8e-21,
Organism=Escherichia coli, GI87082007, Length=168, Percent_Identity=33.9285714285714, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1786584, Length=168, Percent_Identity=32.7380952380952, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1787816, Length=156, Percent_Identity=35.2564102564103, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI87081974, Length=170, Percent_Identity=28.2352941176471, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787541, Length=168, Percent_Identity=33.3333333333333, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1787802, Length=193, Percent_Identity=31.0880829015544, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1788085, Length=212, Percent_Identity=29.2452830188679, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1787056, Length=163, Percent_Identity=31.2883435582822, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788381, Length=171, Percent_Identity=30.9941520467836, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788956, Length=180, Percent_Identity=30.5555555555556, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 59093; Mature: 59093

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVYGLRFTHYTRLLEQRMRFCFPLMEQKIEVSSTSRMLIMTRKKFSWILVTLIIFGFFVT
CEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHH
SLVSYKVAHDTLEEQINKDSLPLTSDNIYSEIQQDLIRPIFISSLMAQDTFVREWTLAGE
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCC
QDPERIIRYLREIQRQYQTISSFYISDRTGHYYHYTGILKQVSESNPNDAWFYRVKNSAP
CCHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEHHHHHHHHHCCCCCCEEEEEEECCCC
DKNFEVNIDIDTANSQQTVVFVNYKVFDFENRFLGVIGVGLSSDAVSALVEKYQKRYNRH
CCCEEEEEEEECCCCCEEEEEEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHCCE
IYFINELGEVTLHGSHHPGFDQIQQREGLKTLATQILTSPSVGASYYADGQKVYLNSRWV
EEEEECCCCEEEECCCCCCHHHHHHHCCHHHHHHHHHCCCCCCCCEECCCCEEEEECCCC
DEFQWYIIVEQKDEFNHDIWFKATLGNLAISAFVALGVLGLAQMSFRGYQKRLEDMAVRD
CCEEEEEEEECCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLTGAYNRQVFEELVDDAISLANKESHPLSLAVIDLDHFKQVNDNYGHPAGDLVLQRVVA
HHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHCCCCCCCHHHHHHHHHHH
LCQRHIAQVGTLCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIAMHASQPQVTVSIGVVQ
HHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEE
YQQNESLLHLFNRADQAMYTAKSEGRNKVVGL
EECCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MVYGLRFTHYTRLLEQRMRFCFPLMEQKIEVSSTSRMLIMTRKKFSWILVTLIIFGFFVT
CEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHH
SLVSYKVAHDTLEEQINKDSLPLTSDNIYSEIQQDLIRPIFISSLMAQDTFVREWTLAGE
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCC
QDPERIIRYLREIQRQYQTISSFYISDRTGHYYHYTGILKQVSESNPNDAWFYRVKNSAP
CCHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEHHHHHHHHHCCCCCCEEEEEEECCCC
DKNFEVNIDIDTANSQQTVVFVNYKVFDFENRFLGVIGVGLSSDAVSALVEKYQKRYNRH
CCCEEEEEEEECCCCCEEEEEEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHCCE
IYFINELGEVTLHGSHHPGFDQIQQREGLKTLATQILTSPSVGASYYADGQKVYLNSRWV
EEEEECCCCEEEECCCCCCHHHHHHHCCHHHHHHHHHCCCCCCCCEECCCCEEEEECCCC
DEFQWYIIVEQKDEFNHDIWFKATLGNLAISAFVALGVLGLAQMSFRGYQKRLEDMAVRD
CCEEEEEEEECCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLTGAYNRQVFEELVDDAISLANKESHPLSLAVIDLDHFKQVNDNYGHPAGDLVLQRVVA
HHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHCCCCCCCHHHHHHHHHHH
LCQRHIAQVGTLCRWGGEEFVVLLPHMTQQEAYQRMESIRAEIAMHASQPQVTVSIGVVQ
HHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEE
YQQNESLLHLFNRADQAMYTAKSEGRNKVVGL
EECCCHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]