| Definition | Vibrio cholerae O395 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_009457 |
| Length | 3,024,069 |
Click here to switch to the map view.
The map label for this gene is 147673811
Identifier: 147673811
GI number: 147673811
Start: 2765757
End: 2766806
Strand: Reverse
Name: 147673811
Synonym: VC0395_A2615
Alternate gene names: NA
Gene position: 2766806-2765757 (Counterclockwise)
Preceding gene: 147673095
Following gene: 147673039
Centisome position: 91.49
GC content: 44.48
Gene sequence:
>1050_bases ATGAAACACCTCTGGTTTGAAAAAGGTGCTTATGCTTCGAAAGCGGCACGCCAATACTTAAATGACCATTTTAACCCTCT AGCAGTTAAGAAAACCGCTGTCATTCGTCATGCAGCGCTTGGCGACCAAGTCATTGTGCGCCCCTTTTTAGTTGAGGCTA GAAAGTTCTTTCCTAATGCCGAAATCACCTTGGTCACCGTGTCAAACTACCTCTATGGAACCCCCTCAGACCTAGCGGAC AAAACAGTAATAATGAAAAGCCGCGATGATTCAAAACAGCTGTCACTCAGGCAAAAATGGCAAGACTATAACCAACTGGA AGCACAAGACATTATCTTTGATGTGGCAGGAACGAATCGCTCTTACTGGATGACATTACTGACTAAAGCGAAACTCAAAG TGGGCTTTCCTTACAAACCCTTTTTATGTGGCACTTTGTATAACTTGGCAGTCTTTCGCTCTGATTTTCAACCGGAAGTG GAATGCATGCTCGACATGCTGAAAATCCTTGGCCACAACCCGAGTTATCCGCTTGATTTTGCTTACCCTGACAATAGACA AATCTGCGATCATGCCGCTCCGTATATCGTCTATTTCAGTGGTGCCTCCCAACTGCGCAAAATTTTAACTAAGCCTGAGA TGCGGGCAGTGATTGAGCAAACCATTCAACAACAACCGAATGTGAAACATGTCTTTCTTGAAGGAAAGAATGAGTTTGAA AAAGGTGAGTATTTACAAGACCTAGCCGACAATGGCTCGTTAACGATTCAACCATGTTTGCCTCTTGATGACTTAGTCAC CTTCATTGCGAAAGCGACTCTGGTGATTGCCCCCGATACGGGCATCCGAAACGTGGCAATATCAACTCACACACCAACGG TGGGAATTTTTTATGCTACGGTTCCCTTTCGTTACACCCCTCTCTATGAAGCGCATACTATCGTGATGAATGCGAATGGT GAAAAGCCGTCTACTGAGCAAATTACCTCAGCGATTGATACAACATTAAAAATGCGCTTGGCTGCAGCCAAAAACACACA GGAACAATGA
Upstream 100 bases:
>100_bases GCTTTAAGCGAGTATGTCCGTTAGAACATTTAAATTGCTTAAATCAACTAAAACCTGCACAAGTCATTAAAGCTTTAGAT AAATTTATTGGAAAAGATTC
Downstream 100 bases:
>100_bases ATATGAGCAAAGTAACCGTATTGATCGCCAACCGACTGATTCGTCTGACTGGCAACCTATTTAAAATGCTCTCTTACCCA TTTCATTGGGTGTTTCCAAA
Product: putative lipopolysaccharide biosynthesis protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 349; Mature: 349
Protein sequence:
>349_residues MKHLWFEKGAYASKAARQYLNDHFNPLAVKKTAVIRHAALGDQVIVRPFLVEARKFFPNAEITLVTVSNYLYGTPSDLAD KTVIMKSRDDSKQLSLRQKWQDYNQLEAQDIIFDVAGTNRSYWMTLLTKAKLKVGFPYKPFLCGTLYNLAVFRSDFQPEV ECMLDMLKILGHNPSYPLDFAYPDNRQICDHAAPYIVYFSGASQLRKILTKPEMRAVIEQTIQQQPNVKHVFLEGKNEFE KGEYLQDLADNGSLTIQPCLPLDDLVTFIAKATLVIAPDTGIRNVAISTHTPTVGIFYATVPFRYTPLYEAHTIVMNANG EKPSTEQITSAIDTTLKMRLAAAKNTQEQ
Sequences:
>Translated_349_residues MKHLWFEKGAYASKAARQYLNDHFNPLAVKKTAVIRHAALGDQVIVRPFLVEARKFFPNAEITLVTVSNYLYGTPSDLAD KTVIMKSRDDSKQLSLRQKWQDYNQLEAQDIIFDVAGTNRSYWMTLLTKAKLKVGFPYKPFLCGTLYNLAVFRSDFQPEV ECMLDMLKILGHNPSYPLDFAYPDNRQICDHAAPYIVYFSGASQLRKILTKPEMRAVIEQTIQQQPNVKHVFLEGKNEFE KGEYLQDLADNGSLTIQPCLPLDDLVTFIAKATLVIAPDTGIRNVAISTHTPTVGIFYATVPFRYTPLYEAHTIVMNANG EKPSTEQITSAIDTTLKMRLAAAKNTQEQ >Mature_349_residues MKHLWFEKGAYASKAARQYLNDHFNPLAVKKTAVIRHAALGDQVIVRPFLVEARKFFPNAEITLVTVSNYLYGTPSDLAD KTVIMKSRDDSKQLSLRQKWQDYNQLEAQDIIFDVAGTNRSYWMTLLTKAKLKVGFPYKPFLCGTLYNLAVFRSDFQPEV ECMLDMLKILGHNPSYPLDFAYPDNRQICDHAAPYIVYFSGASQLRKILTKPEMRAVIEQTIQQQPNVKHVFLEGKNEFE KGEYLQDLADNGSLTIQPCLPLDDLVTFIAKATLVIAPDTGIRNVAISTHTPTVGIFYATVPFRYTPLYEAHTIVMNANG EKPSTEQITSAIDTTLKMRLAAAKNTQEQ
Specific function: Unknown
COG id: COG0859
COG function: function code M; ADP-heptose:LPS heptosyltransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39495; Mature: 39495
Theoretical pI: Translated: 8.28; Mature: 8.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKHLWFEKGAYASKAARQYLNDHFNPLAVKKTAVIRHAALGDQVIVRPFLVEARKFFPNA CCCCCCCCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC EITLVTVSNYLYGTPSDLADKTVIMKSRDDSKQLSLRQKWQDYNQLEAQDIIFDVAGTNR CEEEEEECCCCCCCCHHHCCCEEEEECCCCHHHHHHHHHHHHHHHCCHHHEEEEECCCCC SYWMTLLTKAKLKVGFPYKPFLCGTLYNLAVFRSDFQPEVECMLDMLKILGHNPSYPLDF HHHHEEEEHHHEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEE AYPDNRQICDHAAPYIVYFSGASQLRKILTKPEMRAVIEQTIQQQPNVKHVFLEGKNEFE CCCCCCCHHHCCCCEEEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC KGEYLQDLADNGSLTIQPCLPLDDLVTFIAKATLVIAPDTGIRNVAISTHTPTVGIFYAT CHHHHHHHHCCCCEEEEECCCHHHHHHHHHHEEEEEECCCCCCEEEEECCCCEEEEEEEE VPFRYTPLYEAHTIVMNANGEKPSTEQITSAIDTTLKMRLAAAKNTQEQ CCEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MKHLWFEKGAYASKAARQYLNDHFNPLAVKKTAVIRHAALGDQVIVRPFLVEARKFFPNA CCCCCCCCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC EITLVTVSNYLYGTPSDLADKTVIMKSRDDSKQLSLRQKWQDYNQLEAQDIIFDVAGTNR CEEEEEECCCCCCCCHHHCCCEEEEECCCCHHHHHHHHHHHHHHHCCHHHEEEEECCCCC SYWMTLLTKAKLKVGFPYKPFLCGTLYNLAVFRSDFQPEVECMLDMLKILGHNPSYPLDF HHHHEEEEHHHEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEE AYPDNRQICDHAAPYIVYFSGASQLRKILTKPEMRAVIEQTIQQQPNVKHVFLEGKNEFE CCCCCCCHHHCCCCEEEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC KGEYLQDLADNGSLTIQPCLPLDDLVTFIAKATLVIAPDTGIRNVAISTHTPTVGIFYAT CHHHHHHHHCCCCEEEEECCCHHHHHHHHHHEEEEEECCCCCCEEEEECCCCEEEEEEEE VPFRYTPLYEAHTIVMNANGEKPSTEQITSAIDTTLKMRLAAAKNTQEQ CCEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA