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The map label for this gene is pal [H]

Identifier: 147673661

GI number: 147673661

Start: 1529673

End: 1530191

Strand: Reverse

Name: pal [H]

Synonym: VC0395_A1428

Alternate gene names: 147673661

Gene position: 1530191-1529673 (Counterclockwise)

Preceding gene: 147674437

Following gene: 147673656

Centisome position: 50.6

GC content: 47.4

Gene sequence:

>519_bases
ATGCAACTTAACAAAGTTCTTAAGAGTCTGCTGATTGCGCTACCAGTTTTAGCTGTTACCGCTTGTAGCTCAAGTGATGA
TGCTGCGAACTCAGGTTCTCAAACTAACCAATCAGCAGTGTCTACTGTTGACTCAAATGGTCTGAATGCACAAGGTCAAC
TGACTGAGCAAGAACTGAAAGAACAAGCTCTGCGTGAAAACCAAACTATCTACTTCGCATTCGACAACGCAACTATCGCG
AGCGACTACGAAGCAATGCTAGCTGCACACGCTGCTTACCTAGTGAAAAACCCAAGCCTACGCGTAACTATCGAAGGTCA
CGCTGATGAGCGCGGTACTCCTGAGTACAACATCGCACTGGGTGAGCGTCGTGCTCAAGCAGTTGCTAAGTACCTAGAAG
CTCTGGGTGTTCAAGCTGGCCAACTGTCTATCGTTAGCTACGGTGAAGAGAAGCCTCTAGTTCTAGGTCAATCAGAAGAA
GCGTACGCGAAAAACCGTCGTGCAGTTCTGGTTTACTAA

Upstream 100 bases:

>100_bases
CGCTTTAAAGCAAGATTACCGGCAACCAATGGGCGCGTTCGTGCTCCAGCATGGTCACCGTTTTTATAACAAGTAACTGT
TTAATAGAAAGGAATAGGAA

Downstream 100 bases:

>100_bases
TTGAGGTGATGCCTCATGTTCAGTAACTTAAAGCACGTTGTCATGCTGATGTTACTGGCAAGTGCAGCGAGCTATGCGCT
CGCTGCACCCGCTCCAGTAT

Product: peptidoglycan-associated lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MQLNKVLKSLLIALPVLAVTACSSSDDAANSGSQTNQSAVSTVDSNGLNAQGQLTEQELKEQALRENQTIYFAFDNATIA
SDYEAMLAAHAAYLVKNPSLRVTIEGHADERGTPEYNIALGERRAQAVAKYLEALGVQAGQLSIVSYGEEKPLVLGQSEE
AYAKNRRAVLVY

Sequences:

>Translated_172_residues
MQLNKVLKSLLIALPVLAVTACSSSDDAANSGSQTNQSAVSTVDSNGLNAQGQLTEQELKEQALRENQTIYFAFDNATIA
SDYEAMLAAHAAYLVKNPSLRVTIEGHADERGTPEYNIALGERRAQAVAKYLEALGVQAGQLSIVSYGEEKPLVLGQSEE
AYAKNRRAVLVY
>Mature_172_residues
MQLNKVLKSLLIALPVLAVTACSSSDDAANSGSQTNQSAVSTVDSNGLNAQGQLTEQELKEQALRENQTIYFAFDNATIA
SDYEAMLAAHAAYLVKNPSLRVTIEGHADERGTPEYNIALGERRAQAVAKYLEALGVQAGQLSIVSYGEEKPLVLGQSEE
AYAKNRRAVLVY

Specific function: Thought to play a role in bacterial envelope integrity. Very strongly associated with the peptidoglycan [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=175, Percent_Identity=57.1428571428571, Blast_Score=198, Evalue=1e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 18491; Mature: 18491

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLNKVLKSLLIALPVLAVTACSSSDDAANSGSQTNQSAVSTVDSNGLNAQGQLTEQELK
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHH
EQALRENQTIYFAFDNATIASDYEAMLAAHAAYLVKNPSLRVTIEGHADERGTPEYNIAL
HHHHHCCCEEEEEECCCEEHHHHHHHHHHHHHHEEECCCEEEEEECCCCCCCCCCEEEEE
GERRAQAVAKYLEALGVQAGQLSIVSYGEEKPLVLGQSEEAYAKNRRAVLVY
CHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEECCCCHHHHCCCCEEEEC
>Mature Secondary Structure
MQLNKVLKSLLIALPVLAVTACSSSDDAANSGSQTNQSAVSTVDSNGLNAQGQLTEQELK
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHH
EQALRENQTIYFAFDNATIASDYEAMLAAHAAYLVKNPSLRVTIEGHADERGTPEYNIAL
HHHHHCCCEEEEEECCCEEHHHHHHHHHHHHHHEEECCCEEEEEECCCCCCCCCCEEEEE
GERRAQAVAKYLEALGVQAGQLSIVSYGEEKPLVLGQSEEAYAKNRRAVLVY
CHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEECCCCHHHHCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]