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The map label for this gene is lptF [H]

Identifier: 147673657

GI number: 147673657

Start: 2238434

End: 2239534

Strand: Reverse

Name: lptF [H]

Synonym: VC0395_A2082

Alternate gene names: 147673657

Gene position: 2239534-2238434 (Counterclockwise)

Preceding gene: 147673560

Following gene: 147674275

Centisome position: 74.06

GC content: 46.68

Gene sequence:

>1101_bases
GTGATTATTGTTAGATATTTGATCCGAGAAACAATAAAAAGCCAGTTTGCGATCTTCTTCGTGCTGTTTTTAGTGTTTCT
CAGCCAGAAATTTATCCGTGTTTTGGCGGATGTCTCTGACGGTGAAATTCCTACCAGCATGATCTTATCCATCGTTGGAT
TGAATATGCCGGCAATGGGCTTATTAATGCTGCCACTTAGCCTGTACATCGGTATTCTGCTTACTTTCGGCCGTTTGTAT
GCGGAGAGTGAGATAACCGTGATGAATGCGACTGGGATCGGTAACAAATTTTTGATCCGTGCCGCCTTATATTTGGCTTT
GATTACGGCTTCTGTGGCGGCTTTTAATGCGCTGTGGCTCGCGCCTTGGAGCCAAGATAAAGAAGCTCATTTAATGGAGC
AGTTTGCGGCAGAAAACAGTGTCGATCTGCTGCAAAAAGGCCACTTCCAACGTTCGCCAGATGGCTCTTCGGTGGTGTTC
ATCGACAATATTGAAAATCGTAAATTGTATAACGTGTTTGTGGCGCAGTTAGCACCACGAGATTCGATTTTACCCAGCGT
GATGTTTTCTCACTCGGGCGATGTTAAAGAGCTGAGTGATGGCCGTCAGATCATTACTCTCTATGACGGCACTCGCTATG
AAGGCGTACCTACCCGAGTCGACTACATGATCACTAACTTCGACTCTTACGACGGCTTGATCGGCCAACGTGAAGTGAAA
TCGGCTGAACGTGATTGGGAAGCTCTGCCAACCTTAAGCTTGCTCAATAATGCGGATCGCCGAGCACAAGCCGAATTACA
ATGGCGAATCTCTCTCGTAGTGTGTATTCCACTGTTGACTATGTTGGTTGTCCCTCTTTCCGCGGTGAACCCTCGTCAAG
GACGTTTTGCCAAAATGGGACCCGCTATTTTGATCTATTTGACTTATTTCCTTGCGCTCAGTGCGACCAAATCAGCGATT
GAAGATGGTTCACTGCCGGTTATCATTGGCTTGTGGCCAATTAATGCCGCACTGCTGTTGGCTGCGCTGATGGTCAATAC
CTTGGATAGCATTCCAGTGCGCCGTCTTAAAGATCGATGGAAACAGAGAAAGGTAGCTTAA

Upstream 100 bases:

>100_bases
GCAACCTAACCGTTAGCGAAATTATTCAAAAAATAAAAGGTTCATCGGGAAATTATAGTGATTCAATCAAAAAAACAAGT
TTTGCATAGGTAATTTCAGC

Downstream 100 bases:

>100_bases
GTCGTGTTTAAAATTCTTGATTGGTATATCGGCCGCACTATTGTTGCTACAACAGCCTTGGTTTTGGTTACCTTTGTTGG
CCTCTCTGGCATCATCAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 366

Protein sequence:

>366_residues
MIIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADVSDGEIPTSMILSIVGLNMPAMGLLMLPLSLYIGILLTFGRLY
AESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWLAPWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVF
IDNIENRKLYNVFVAQLAPRDSILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQREVK
SAERDWEALPTLSLLNNADRRAQAELQWRISLVVCIPLLTMLVVPLSAVNPRQGRFAKMGPAILIYLTYFLALSATKSAI
EDGSLPVIIGLWPINAALLLAALMVNTLDSIPVRRLKDRWKQRKVA

Sequences:

>Translated_366_residues
MIIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADVSDGEIPTSMILSIVGLNMPAMGLLMLPLSLYIGILLTFGRLY
AESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWLAPWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVF
IDNIENRKLYNVFVAQLAPRDSILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQREVK
SAERDWEALPTLSLLNNADRRAQAELQWRISLVVCIPLLTMLVVPLSAVNPRQGRFAKMGPAILIYLTYFLALSATKSAI
EDGSLPVIIGLWPINAALLLAALMVNTLDSIPVRRLKDRWKQRKVA
>Mature_366_residues
MIIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADVSDGEIPTSMILSIVGLNMPAMGLLMLPLSLYIGILLTFGRLY
AESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWLAPWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVF
IDNIENRKLYNVFVAQLAPRDSILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQREVK
SAERDWEALPTLSLLNNADRRAQAELQWRISLVVCIPLLTMLVVPLSAVNPRQGRFAKMGPAILIYLTYFLALSATKSAI
EDGSLPVIIGLWPINAALLLAALMVNTLDSIPVRRLKDRWKQRKVA

Specific function: Part of the ABC transporter complex lptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG0795

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptF/lptG family [H]

Homologues:

Organism=Escherichia coli, GI1790712, Length=363, Percent_Identity=42.9752066115703, Blast_Score=278, Evalue=4e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005495 [H]

Pfam domain/function: PF03739 YjgP_YjgQ [H]

EC number: NA

Molecular weight: Translated: 40887; Mature: 40887

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADVSDGEIPTSMILSIVGLNMPAMG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHH
LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWL
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHEE
APWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLYNVFVAQLAPR
CCCCCCHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCC
DSILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQREVK
CHHHHHHHHCCCCCHHHHCCCCEEEEEECCCCCCCCCCEEHEEEECCCCCCCCCCHHHHH
SAERDWEALPTLSLLNNADRRAQAELQWRISLVVCIPLLTMLVVPLSAVNPRQGRFAKMG
HHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHC
PAILIYLTYFLALSATKSAIEDGSLPVIIGLWPINAALLLAALMVNTLDSIPVRRLKDRW
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHH
KQRKVA
HHCCCC
>Mature Secondary Structure
MIIVRYLIRETIKSQFAIFFVLFLVFLSQKFIRVLADVSDGEIPTSMILSIVGLNMPAMG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHH
LLMLPLSLYIGILLTFGRLYAESEITVMNATGIGNKFLIRAALYLALITASVAAFNALWL
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHEE
APWSQDKEAHLMEQFAAENSVDLLQKGHFQRSPDGSSVVFIDNIENRKLYNVFVAQLAPR
CCCCCCHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCC
DSILPSVMFSHSGDVKELSDGRQIITLYDGTRYEGVPTRVDYMITNFDSYDGLIGQREVK
CHHHHHHHHCCCCCHHHHCCCCEEEEEECCCCCCCCCCEEHEEEECCCCCCCCCCHHHHH
SAERDWEALPTLSLLNNADRRAQAELQWRISLVVCIPLLTMLVVPLSAVNPRQGRFAKMG
HHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHC
PAILIYLTYFLALSATKSAIEDGSLPVIIGLWPINAALLLAALMVNTLDSIPVRRLKDRW
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHH
KQRKVA
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]