| Definition | Vibrio cholerae O395 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_009457 |
| Length | 3,024,069 |
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The map label for this gene is dbpA [H]
Identifier: 147673597
GI number: 147673597
Start: 2299293
End: 2300675
Strand: Reverse
Name: dbpA [H]
Synonym: VC0395_A2141
Alternate gene names: 147673597
Gene position: 2300675-2299293 (Counterclockwise)
Preceding gene: 147674916
Following gene: 147675164
Centisome position: 76.08
GC content: 50.9
Gene sequence:
>1383_bases TTGAACGCCAACTCTTTTGCTGCTTTGAATCTGAAGCCTGAACTTCTTGCTAACCTTGAAACCATGGGGTTTGCCACTAT GACTCCGATTCAGGCGCAATCTCTTCCTGCGATCCTTAAAGGGCAGGATGTGATTGGCCAAGGCAAAACAGGCTCCGGTA AAACCGCTGCGTTTGGTCTTGGGGTACTCTCCAACCTCAATGTGAAGCGCTTTCGTGTGCAAGCCTTGGTGCTGTGTCCA ACACGTGAGTTGGCCGATCAAGTCGCGACCGATATTCGTACGCTAGGGCGTGCTATCCACAATATCAAAGTGTTGACGCT GTGTGGCGGTATGCCAATGGGGCCGCAGATCGGATCCCTTGAGCATGGCGCGCATATCTTGGTCGGAACGCCGGGACGGA TTTTGGATCATTTGAGTAAAGATCGTATCGATCTGAGTGAGCTCAATACCTTGGTATTGGATGAAGCTGACCGCATGCTC GAAATGGGTTTCCAAGAAGCGCTGGAGGCGATCATTGCTGCCGCGCCAGCCGAGCGTCAAACCTTGCTGTTTAGTGCAAC TTACCCCACCAGCATTGAGCAGATTGCGCAAAGTGTGACTCGCAATGCGCTGATGATTAAAGTTGAGGCGACCCACGATA CTTCAAGCATTCGTCAATATTTCTACAAAGTAGAAGGCAGTGCTGCGCGTGATGAGGCTCTGGAAACGTTGCTCTTGCAC CATCAACCGACTTCTTCGGTGGTGTTCTGTAACACCAAACGTGAAGTACAAAATGTTGCCGATGCCCTGCATCAAAGCGG TTTTAGCGTGATTGAACTGCATGGTGATATGGAGCAGCGTGAGCGCGACCAAGCCTTAGTGCAATTTGCCAATAAGAGTA TTTCTATTCTGGTCGCGACCGATGTTGCGGCTCGTGGTCTGGATGTCGATAACCTTGATGCAGTGTTTAACTACGATCTG TCTCGCGATCCTGAAGTGCATGTACATCGCATCGGGCGTACTGGTCGTGCGGGAAGTAAGGGCTTAGCGTTTAGCTTCTT TAGTGACAATGAGAGCTACCGTGTGGCGCAAATTGATGAGTACATGGATATCGCGATTGAACCTTCAACCTTGCCGCAAC CAGCTGCAGGCGCTCGTCCTTACGCGGCGAATATGGTCACCATTCAGATTGACGGTGGTAAGAAAGATAAGGTGCGTCCC GGTGATATCCTTGGCGCACTGACCAGTGATGGCGAACTGACCGCGGAGCATATCGGCAAGATTAACCTGTTCCCGATGCG TGCTTATGTGGCCGTGCAGAAGAAAATCGCCCACAAAGCTCTGAATAAAATTGCCAACGGTAAGATGAAGGGACGCCAGT TCCGCGCTCGCTTACTCAAATAA
Upstream 100 bases:
>100_bases GGTTAAGGGCAAGCAAGAAAATTTAAATCAAGATTCACTGGAGCTCGGGCGCAAAATAACGATAATAGCGCTTCTTTTTT CGTCACACTGAGGACACCCC
Downstream 100 bases:
>100_bases TATCACGCATCCTGTCTCAGCCGCGCTTTAATGCGGCTGAGGCTAATTGGCGTTATCCCCAAATACGCGGCGATGTGATG ATCGCAAAGCCGCGCCATCA
Product: ATP-dependent RNA helicase DbpA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 460; Mature: 460
Protein sequence:
>460_residues MNANSFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSNLNVKRFRVQALVLCP TRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRML EMGFQEALEAIIAAAPAERQTLLFSATYPTSIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLH HQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNLDAVFNYDL SRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDIAIEPSTLPQPAAGARPYAANMVTIQIDGGKKDKVRP GDILGALTSDGELTAEHIGKINLFPMRAYVAVQKKIAHKALNKIANGKMKGRQFRARLLK
Sequences:
>Translated_460_residues MNANSFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSNLNVKRFRVQALVLCP TRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRML EMGFQEALEAIIAAAPAERQTLLFSATYPTSIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLH HQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNLDAVFNYDL SRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDIAIEPSTLPQPAAGARPYAANMVTIQIDGGKKDKVRP GDILGALTSDGELTAEHIGKINLFPMRAYVAVQKKIAHKALNKIANGKMKGRQFRARLLK >Mature_460_residues MNANSFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSNLNVKRFRVQALVLCP TRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRML EMGFQEALEAIIAAAPAERQTLLFSATYPTSIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLH HQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNLDAVFNYDL SRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDIAIEPSTLPQPAAGARPYAANMVTIQIDGGKKDKVRP GDILGALTSDGELTAEHIGKINLFPMRAYVAVQKKIAHKALNKIANGKMKGRQFRARLLK
Specific function: Has a helix-destabilizing activity, which is not coupled to the ATPase activity. Can unwind the 23S rRNA as well as 16S rRNA. Exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA. Could play a major role in ribosome ass
COG id: COG0513
COG function: function code LKJ; Superfamily II DNA and RNA helicases
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Homo sapiens, GI7661920, Length=371, Percent_Identity=36.6576819407008, Blast_Score=253, Evalue=3e-67, Organism=Homo sapiens, GI45446747, Length=359, Percent_Identity=37.883008356546, Blast_Score=250, Evalue=2e-66, Organism=Homo sapiens, GI45446743, Length=359, Percent_Identity=37.883008356546, Blast_Score=250, Evalue=2e-66, Organism=Homo sapiens, GI31542656, Length=370, Percent_Identity=37.5675675675676, Blast_Score=240, Evalue=2e-63, Organism=Homo sapiens, GI4758138, Length=367, Percent_Identity=36.2397820163488, Blast_Score=238, Evalue=1e-62, Organism=Homo sapiens, GI148613856, Length=354, Percent_Identity=36.7231638418079, Blast_Score=236, Evalue=3e-62, Organism=Homo sapiens, GI38201710, Length=354, Percent_Identity=36.7231638418079, Blast_Score=236, Evalue=3e-62, Organism=Homo sapiens, GI262118318, Length=364, Percent_Identity=37.9120879120879, Blast_Score=235, Evalue=5e-62, Organism=Homo sapiens, GI262231852, Length=364, Percent_Identity=37.9120879120879, Blast_Score=234, Evalue=1e-61, Organism=Homo sapiens, GI216548263, Length=364, Percent_Identity=37.9120879120879, Blast_Score=234, Evalue=1e-61, Organism=Homo sapiens, GI13518015, Length=364, Percent_Identity=37.9120879120879, Blast_Score=234, Evalue=1e-61, Organism=Homo sapiens, GI164664518, Length=366, Percent_Identity=33.3333333333333, Blast_Score=234, Evalue=2e-61, Organism=Homo sapiens, GI87196351, Length=368, Percent_Identity=38.0434782608696, Blast_Score=232, Evalue=5e-61, Organism=Homo sapiens, GI301171475, Length=368, Percent_Identity=38.0434782608696, Blast_Score=232, Evalue=5e-61, Organism=Homo sapiens, GI301171467, Length=368, Percent_Identity=38.0434782608696, Blast_Score=232, Evalue=5e-61, Organism=Homo sapiens, GI20149629, Length=346, Percent_Identity=36.9942196531792, Blast_Score=231, Evalue=1e-60, Organism=Homo sapiens, GI169881239, Length=369, Percent_Identity=37.1273712737127, Blast_Score=228, Evalue=1e-59, Organism=Homo sapiens, GI13514809, Length=369, Percent_Identity=37.1273712737127, Blast_Score=228, Evalue=1e-59, Organism=Homo sapiens, GI222352149, Length=359, Percent_Identity=37.3259052924791, Blast_Score=222, Evalue=5e-58, Organism=Homo sapiens, GI224593278, Length=376, Percent_Identity=37.7659574468085, Blast_Score=222, Evalue=6e-58, Organism=Homo sapiens, GI50659095, Length=401, Percent_Identity=34.1645885286783, Blast_Score=221, Evalue=9e-58, Organism=Homo sapiens, GI41327773, Length=370, Percent_Identity=34.0540540540541, Blast_Score=216, Evalue=3e-56, Organism=Homo sapiens, GI83700235, Length=367, Percent_Identity=35.4223433242507, Blast_Score=211, Evalue=1e-54, Organism=Homo sapiens, GI21071032, Length=359, Percent_Identity=35.3760445682451, Blast_Score=211, Evalue=1e-54, Organism=Homo sapiens, GI188035877, Length=379, Percent_Identity=35.6200527704486, Blast_Score=210, Evalue=2e-54, Organism=Homo sapiens, GI4503529, Length=371, Percent_Identity=34.5013477088949, Blast_Score=207, Evalue=1e-53, Organism=Homo sapiens, GI41327771, Length=384, Percent_Identity=32.8125, Blast_Score=207, Evalue=2e-53, Organism=Homo sapiens, GI13129006, Length=402, Percent_Identity=33.3333333333333, Blast_Score=203, Evalue=2e-52, Organism=Homo sapiens, GI4758112, Length=359, Percent_Identity=32.3119777158774, Blast_Score=200, Evalue=3e-51, Organism=Homo sapiens, GI18375623, Length=359, Percent_Identity=32.3119777158774, Blast_Score=200, Evalue=3e-51, Organism=Homo sapiens, GI21040371, Length=359, Percent_Identity=31.7548746518106, Blast_Score=199, Evalue=6e-51, Organism=Homo sapiens, GI6005743, Length=382, Percent_Identity=35.0785340314136, Blast_Score=191, Evalue=2e-48, Organism=Homo sapiens, GI8922886, Length=385, Percent_Identity=34.8051948051948, Blast_Score=190, Evalue=2e-48, Organism=Homo sapiens, GI13514831, Length=383, Percent_Identity=33.420365535248, Blast_Score=189, Evalue=4e-48, Organism=Homo sapiens, GI256223453, Length=366, Percent_Identity=31.6939890710383, Blast_Score=189, Evalue=6e-48, Organism=Homo sapiens, GI164419732, Length=359, Percent_Identity=33.983286908078, Blast_Score=188, Evalue=1e-47, Organism=Homo sapiens, GI38327634, Length=344, Percent_Identity=36.046511627907, Blast_Score=186, Evalue=3e-47, Organism=Homo sapiens, GI164419743, Length=359, Percent_Identity=32.3119777158774, Blast_Score=186, Evalue=4e-47, Organism=Homo sapiens, GI51094101, Length=359, Percent_Identity=32.3119777158774, Blast_Score=186, Evalue=5e-47, Organism=Homo sapiens, GI55749865, Length=370, Percent_Identity=30.5405405405405, Blast_Score=186, Evalue=5e-47, Organism=Homo sapiens, GI41327779, Length=365, Percent_Identity=32.3287671232877, Blast_Score=184, Evalue=2e-46, Organism=Homo sapiens, GI41327776, Length=346, Percent_Identity=31.7919075144509, Blast_Score=182, Evalue=4e-46, Organism=Homo sapiens, GI62241022, Length=365, Percent_Identity=34.5205479452055, Blast_Score=176, Evalue=3e-44, Organism=Homo sapiens, GI62241024, Length=343, Percent_Identity=34.402332361516, Blast_Score=166, Evalue=3e-41, Organism=Homo sapiens, GI38569503, Length=351, Percent_Identity=31.6239316239316, Blast_Score=164, Evalue=2e-40, Organism=Homo sapiens, GI38569505, Length=351, Percent_Identity=31.6239316239316, Blast_Score=163, Evalue=4e-40, Organism=Homo sapiens, GI9506931, Length=400, Percent_Identity=28, Blast_Score=160, Evalue=3e-39, Organism=Homo sapiens, GI256773275, Length=397, Percent_Identity=30.7304785894207, Blast_Score=143, Evalue=4e-34, Organism=Homo sapiens, GI4826686, Length=331, Percent_Identity=30.2114803625378, Blast_Score=133, Evalue=4e-31, Organism=Homo sapiens, GI9966805, Length=342, Percent_Identity=31.2865497076023, Blast_Score=127, Evalue=2e-29, Organism=Homo sapiens, GI17505907, Length=225, Percent_Identity=35.5555555555556, Blast_Score=126, Evalue=3e-29, Organism=Homo sapiens, GI20336298, Length=221, Percent_Identity=36.1990950226244, Blast_Score=125, Evalue=7e-29, Organism=Homo sapiens, GI154759257, Length=415, Percent_Identity=28.433734939759, Blast_Score=119, Evalue=9e-27, Organism=Escherichia coli, GI1787605, Length=458, Percent_Identity=54.585152838428, Blast_Score=493, Evalue=1e-140, Organism=Escherichia coli, GI87082221, Length=369, Percent_Identity=42.5474254742547, Blast_Score=284, Evalue=1e-77, Organism=Escherichia coli, GI1787016, Length=389, Percent_Identity=38.8174807197943, Blast_Score=256, Evalue=3e-69, Organism=Escherichia coli, GI1790214, Length=404, Percent_Identity=35.8910891089109, Blast_Score=225, Evalue=4e-60, Organism=Escherichia coli, GI1788930, Length=373, Percent_Identity=34.8525469168901, Blast_Score=207, Evalue=2e-54, Organism=Escherichia coli, GI48994977, Length=346, Percent_Identity=24.2774566473988, Blast_Score=68, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71995724, Length=371, Percent_Identity=38.2749326145553, Blast_Score=260, Evalue=1e-69, Organism=Caenorhabditis elegans, GI71987143, Length=373, Percent_Identity=36.4611260053619, Blast_Score=260, Evalue=1e-69, Organism=Caenorhabditis elegans, GI17507121, Length=371, Percent_Identity=38.2749326145553, Blast_Score=259, Evalue=1e-69, Organism=Caenorhabditis elegans, GI115533224, Length=362, Percent_Identity=38.121546961326, Blast_Score=235, Evalue=5e-62, Organism=Caenorhabditis elegans, GI17555296, Length=368, Percent_Identity=37.7717391304348, Blast_Score=233, Evalue=2e-61, Organism=Caenorhabditis elegans, GI115532546, Length=358, Percent_Identity=35.7541899441341, Blast_Score=223, Evalue=1e-58, Organism=Caenorhabditis elegans, GI71995718, Length=384, Percent_Identity=37.5, Blast_Score=223, Evalue=2e-58, Organism=Caenorhabditis elegans, GI115532548, Length=358, Percent_Identity=35.7541899441341, Blast_Score=223, Evalue=2e-58, Organism=Caenorhabditis elegans, GI71995514, Length=365, Percent_Identity=37.5342465753425, Blast_Score=218, Evalue=4e-57, Organism=Caenorhabditis elegans, GI17510307, Length=365, Percent_Identity=37.5342465753425, Blast_Score=218, Evalue=4e-57, Organism=Caenorhabditis elegans, GI17510309, Length=365, Percent_Identity=37.5342465753425, Blast_Score=218, Evalue=5e-57, Organism=Caenorhabditis elegans, GI86570094, Length=363, Percent_Identity=36.3636363636364, Blast_Score=217, Evalue=1e-56, Organism=Caenorhabditis elegans, GI17507877, Length=377, Percent_Identity=36.3395225464191, Blast_Score=214, Evalue=9e-56, Organism=Caenorhabditis elegans, GI17552114, Length=364, Percent_Identity=31.8681318681319, Blast_Score=212, Evalue=3e-55, Organism=Caenorhabditis elegans, GI17552642, Length=356, Percent_Identity=35.9550561797753, Blast_Score=211, Evalue=8e-55, Organism=Caenorhabditis elegans, GI17507945, Length=368, Percent_Identity=36.6847826086957, Blast_Score=206, Evalue=2e-53, Organism=Caenorhabditis elegans, GI71999646, Length=356, Percent_Identity=33.7078651685393, Blast_Score=203, Evalue=2e-52, Organism=Caenorhabditis elegans, GI32565321, Length=374, Percent_Identity=33.1550802139037, Blast_Score=202, Evalue=2e-52, Organism=Caenorhabditis elegans, GI71999644, Length=356, Percent_Identity=33.7078651685393, Blast_Score=202, Evalue=4e-52, Organism=Caenorhabditis elegans, GI17507879, Length=375, Percent_Identity=34.9333333333333, Blast_Score=201, Evalue=7e-52, Organism=Caenorhabditis elegans, GI17510559, Length=386, Percent_Identity=31.8652849740933, Blast_Score=198, Evalue=4e-51, Organism=Caenorhabditis elegans, GI17537549, Length=367, Percent_Identity=34.0599455040872, Blast_Score=198, Evalue=5e-51, Organism=Caenorhabditis elegans, GI71982858, Length=378, Percent_Identity=30.4232804232804, Blast_Score=197, Evalue=8e-51, Organism=Caenorhabditis elegans, GI17536099, Length=397, Percent_Identity=33.5012594458438, Blast_Score=196, Evalue=3e-50, Organism=Caenorhabditis elegans, GI17536101, Length=397, Percent_Identity=33.5012594458438, Blast_Score=195, Evalue=5e-50, Organism=Caenorhabditis elegans, GI17536103, Length=397, Percent_Identity=33.5012594458438, Blast_Score=191, Evalue=7e-49, Organism=Caenorhabditis elegans, GI17507881, Length=374, Percent_Identity=32.620320855615, Blast_Score=187, Evalue=8e-48, Organism=Caenorhabditis elegans, GI17553716, Length=360, Percent_Identity=31.3888888888889, Blast_Score=187, Evalue=9e-48, Organism=Caenorhabditis elegans, GI17509811, Length=397, Percent_Identity=31.9899244332494, Blast_Score=184, Evalue=6e-47, Organism=Caenorhabditis elegans, GI17505370, Length=351, Percent_Identity=32.7635327635328, Blast_Score=183, Evalue=2e-46, Organism=Caenorhabditis elegans, GI193206561, Length=347, Percent_Identity=30.5475504322767, Blast_Score=179, Evalue=3e-45, Organism=Caenorhabditis elegans, GI193208216, Length=376, Percent_Identity=32.7127659574468, Blast_Score=166, Evalue=3e-41, Organism=Caenorhabditis elegans, GI17508543, Length=368, Percent_Identity=31.5217391304348, Blast_Score=155, Evalue=5e-38, Organism=Caenorhabditis elegans, GI17556951, Length=396, Percent_Identity=27.2727272727273, Blast_Score=150, Evalue=1e-36, Organism=Caenorhabditis elegans, GI17507641, Length=380, Percent_Identity=30.2631578947368, Blast_Score=139, Evalue=4e-33, Organism=Caenorhabditis elegans, GI71990816, Length=374, Percent_Identity=31.283422459893, Blast_Score=138, Evalue=8e-33, Organism=Caenorhabditis elegans, GI32564046, Length=367, Percent_Identity=29.700272479564, Blast_Score=130, Evalue=2e-30, Organism=Caenorhabditis elegans, GI25148291, Length=330, Percent_Identity=29.6969696969697, Blast_Score=121, Evalue=7e-28, Organism=Caenorhabditis elegans, GI71982862, Length=208, Percent_Identity=29.8076923076923, Blast_Score=115, Evalue=5e-26, Organism=Caenorhabditis elegans, GI71997889, Length=384, Percent_Identity=27.8645833333333, Blast_Score=114, Evalue=9e-26, Organism=Caenorhabditis elegans, GI25148203, Length=408, Percent_Identity=24.0196078431373, Blast_Score=114, Evalue=2e-25, Organism=Caenorhabditis elegans, GI71987152, Length=114, Percent_Identity=40.3508771929825, Blast_Score=98, Evalue=8e-21, Organism=Saccharomyces cerevisiae, GI6320224, Length=370, Percent_Identity=34.5945945945946, Blast_Score=249, Evalue=7e-67, Organism=Saccharomyces cerevisiae, GI6324217, Length=357, Percent_Identity=36.9747899159664, Blast_Score=242, Evalue=1e-64, Organism=Saccharomyces cerevisiae, GI6320041, Length=370, Percent_Identity=34.3243243243243, Blast_Score=238, Evalue=2e-63, Organism=Saccharomyces cerevisiae, GI6321360, Length=359, Percent_Identity=38.9972144846797, Blast_Score=235, Evalue=1e-62, Organism=Saccharomyces cerevisiae, GI6321856, Length=361, Percent_Identity=37.1191135734072, Blast_Score=229, Evalue=5e-61, Organism=Saccharomyces cerevisiae, GI6325138, Length=380, Percent_Identity=36.5789473684211, Blast_Score=227, Evalue=4e-60, Organism=Saccharomyces cerevisiae, GI6324778, Length=377, Percent_Identity=36.8700265251989, Blast_Score=226, Evalue=6e-60, Organism=Saccharomyces cerevisiae, GI6323947, Length=356, Percent_Identity=37.0786516853933, Blast_Score=214, Evalue=3e-56, Organism=Saccharomyces cerevisiae, GI6323021, Length=362, Percent_Identity=33.7016574585635, Blast_Score=204, Evalue=3e-53, Organism=Saccharomyces cerevisiae, GI6320119, Length=391, Percent_Identity=31.9693094629156, Blast_Score=202, Evalue=6e-53, Organism=Saccharomyces cerevisiae, GI6324620, Length=364, Percent_Identity=33.2417582417582, Blast_Score=202, Evalue=1e-52, Organism=Saccharomyces cerevisiae, GI6322912, Length=364, Percent_Identity=34.6153846153846, Blast_Score=198, Evalue=1e-51, Organism=Saccharomyces cerevisiae, GI6322323, Length=364, Percent_Identity=34.6153846153846, Blast_Score=198, Evalue=1e-51, Organism=Saccharomyces cerevisiae, GI6321963, Length=372, Percent_Identity=33.8709677419355, Blast_Score=190, Evalue=3e-49, Organism=Saccharomyces cerevisiae, GI6322427, Length=373, Percent_Identity=34.5844504021448, Blast_Score=186, Evalue=5e-48, Organism=Saccharomyces cerevisiae, GI6320449, Length=372, Percent_Identity=31.989247311828, Blast_Score=186, Evalue=8e-48, Organism=Saccharomyces cerevisiae, GI6321111, Length=365, Percent_Identity=31.7808219178082, Blast_Score=176, Evalue=6e-45, Organism=Saccharomyces cerevisiae, GI6319618, Length=415, Percent_Identity=30.6024096385542, Blast_Score=176, Evalue=7e-45, Organism=Saccharomyces cerevisiae, GI6319714, Length=365, Percent_Identity=29.041095890411, Blast_Score=163, Evalue=6e-41, Organism=Saccharomyces cerevisiae, GI6320173, Length=237, Percent_Identity=35.0210970464135, Blast_Score=146, Evalue=7e-36, Organism=Saccharomyces cerevisiae, GI6320400, Length=408, Percent_Identity=26.2254901960784, Blast_Score=140, Evalue=6e-34, Organism=Saccharomyces cerevisiae, GI6321267, Length=375, Percent_Identity=28.2666666666667, Blast_Score=135, Evalue=1e-32, Organism=Saccharomyces cerevisiae, GI6323306, Length=412, Percent_Identity=26.4563106796117, Blast_Score=129, Evalue=1e-30, Organism=Saccharomyces cerevisiae, GI6324366, Length=407, Percent_Identity=25.3071253071253, Blast_Score=106, Evalue=7e-24, Organism=Saccharomyces cerevisiae, GI6322876, Length=186, Percent_Identity=34.9462365591398, Blast_Score=99, Evalue=1e-21, Organism=Saccharomyces cerevisiae, GI6321374, Length=388, Percent_Identity=22.4226804123711, Blast_Score=84, Evalue=6e-17, Organism=Drosophila melanogaster, GI24645031, Length=371, Percent_Identity=38.2749326145553, Blast_Score=258, Evalue=7e-69, Organism=Drosophila melanogaster, GI24644479, Length=362, Percent_Identity=37.292817679558, Blast_Score=238, Evalue=6e-63, Organism=Drosophila melanogaster, GI24644483, Length=362, Percent_Identity=37.292817679558, Blast_Score=238, Evalue=6e-63, Organism=Drosophila melanogaster, GI281361218, Length=362, Percent_Identity=37.292817679558, Blast_Score=238, Evalue=6e-63, Organism=Drosophila melanogaster, GI24644481, Length=362, Percent_Identity=37.292817679558, Blast_Score=238, Evalue=6e-63, Organism=Drosophila melanogaster, GI24644487, Length=362, Percent_Identity=37.292817679558, Blast_Score=238, Evalue=6e-63, Organism=Drosophila melanogaster, GI45551833, Length=362, Percent_Identity=37.292817679558, Blast_Score=238, Evalue=6e-63, Organism=Drosophila melanogaster, GI24644485, Length=362, Percent_Identity=37.292817679558, Blast_Score=238, Evalue=6e-63, Organism=Drosophila melanogaster, GI24662330, Length=354, Percent_Identity=37.5706214689266, Blast_Score=235, Evalue=4e-62, Organism=Drosophila melanogaster, GI24584399, Length=359, Percent_Identity=37.0473537604457, Blast_Score=234, Evalue=1e-61, Organism=Drosophila melanogaster, GI21355075, Length=357, Percent_Identity=36.6946778711485, Blast_Score=233, Evalue=2e-61, Organism=Drosophila melanogaster, GI28574962, Length=348, Percent_Identity=37.6436781609195, Blast_Score=229, Evalue=3e-60, Organism=Drosophila melanogaster, GI24642151, Length=372, Percent_Identity=34.1397849462366, Blast_Score=224, Evalue=1e-58, Organism=Drosophila melanogaster, GI18857967, Length=366, Percent_Identity=35.2459016393443, Blast_Score=221, Evalue=9e-58, Organism=Drosophila melanogaster, GI17136814, Length=355, Percent_Identity=40, Blast_Score=221, Evalue=1e-57, Organism=Drosophila melanogaster, GI24585582, Length=353, Percent_Identity=37.1104815864023, Blast_Score=219, Evalue=3e-57, Organism=Drosophila melanogaster, GI24583281, Length=366, Percent_Identity=32.2404371584699, Blast_Score=218, Evalue=8e-57, Organism=Drosophila melanogaster, GI24583279, Length=366, Percent_Identity=32.2404371584699, Blast_Score=218, Evalue=9e-57, Organism=Drosophila melanogaster, GI24582080, Length=365, Percent_Identity=34.5205479452055, Blast_Score=216, Evalue=2e-56, Organism=Drosophila melanogaster, GI24582078, Length=365, Percent_Identity=34.5205479452055, Blast_Score=216, Evalue=2e-56, Organism=Drosophila melanogaster, GI17136248, Length=365, Percent_Identity=34.5205479452055, Blast_Score=216, Evalue=2e-56, Organism=Drosophila melanogaster, GI24582075, Length=365, Percent_Identity=34.5205479452055, Blast_Score=216, Evalue=2e-56, Organism=Drosophila melanogaster, GI17985987, Length=374, Percent_Identity=35.0267379679144, Blast_Score=211, Evalue=7e-55, Organism=Drosophila melanogaster, GI17977678, Length=358, Percent_Identity=35.195530726257, Blast_Score=207, Evalue=2e-53, Organism=Drosophila melanogaster, GI28575014, Length=354, Percent_Identity=34.180790960452, Blast_Score=204, Evalue=8e-53, Organism=Drosophila melanogaster, GI24584994, Length=383, Percent_Identity=32.1148825065274, Blast_Score=202, Evalue=3e-52, Organism=Drosophila melanogaster, GI21356161, Length=376, Percent_Identity=33.2446808510638, Blast_Score=195, Evalue=4e-50, Organism=Drosophila melanogaster, GI28571808, Length=352, Percent_Identity=36.0795454545455, Blast_Score=194, Evalue=9e-50, Organism=Drosophila melanogaster, GI28571809, Length=352, Percent_Identity=36.0795454545455, Blast_Score=194, Evalue=9e-50, Organism=Drosophila melanogaster, GI24581954, Length=379, Percent_Identity=31.3984168865435, Blast_Score=189, Evalue=3e-48, Organism=Drosophila melanogaster, GI24581952, Length=379, Percent_Identity=31.3984168865435, Blast_Score=189, Evalue=3e-48, Organism=Drosophila melanogaster, GI24581956, Length=379, Percent_Identity=31.3984168865435, Blast_Score=189, Evalue=3e-48, Organism=Drosophila melanogaster, GI281365720, Length=307, Percent_Identity=36.1563517915309, Blast_Score=184, Evalue=1e-46, Organism=Drosophila melanogaster, GI17647335, Length=383, Percent_Identity=31.5926892950392, Blast_Score=176, Evalue=4e-44, Organism=Drosophila melanogaster, GI24666101, Length=371, Percent_Identity=31.8059299191375, Blast_Score=162, Evalue=4e-40, Organism=Drosophila melanogaster, GI21355559, Length=383, Percent_Identity=31.8537859007833, Blast_Score=160, Evalue=2e-39, Organism=Drosophila melanogaster, GI24642822, Length=400, Percent_Identity=28.75, Blast_Score=158, Evalue=6e-39, Organism=Drosophila melanogaster, GI24668515, Length=327, Percent_Identity=31.1926605504587, Blast_Score=135, Evalue=7e-32, Organism=Drosophila melanogaster, GI20130173, Length=447, Percent_Identity=27.9642058165548, Blast_Score=134, Evalue=1e-31, Organism=Drosophila melanogaster, GI19920478, Length=382, Percent_Identity=29.5811518324607, Blast_Score=129, Evalue=5e-30, Organism=Drosophila melanogaster, GI24643725, Length=384, Percent_Identity=27.6041666666667, Blast_Score=127, Evalue=2e-29, Organism=Drosophila melanogaster, GI18859659, Length=225, Percent_Identity=33.3333333333333, Blast_Score=120, Evalue=1e-27, Organism=Drosophila melanogaster, GI28571338, Length=225, Percent_Identity=33.3333333333333, Blast_Score=120, Evalue=1e-27, Organism=Drosophila melanogaster, GI17136666, Length=406, Percent_Identity=27.8325123152709, Blast_Score=112, Evalue=5e-25, Organism=Drosophila melanogaster, GI24640164, Length=383, Percent_Identity=22.4543080939948, Blast_Score=90, Evalue=3e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005580 - InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR000629 - InterPro: IPR014014 [H]
Pfam domain/function: PF03880 DbpA; PF00270 DEAD; PF00271 Helicase_C [H]
EC number: =3.6.4.13 [H]
Molecular weight: Translated: 50042; Mature: 50042
Theoretical pI: Translated: 7.45; Mature: 7.45
Prosite motif: PS00039 DEAD_ATP_HELICASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNANSFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGL CCCCCEEEEECCHHHHHCHHHCCCEEECCCCHHCCCHHHCCCCCCCCCCCCCCCCCEEHH GVLSNLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSL HHHCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCC EHGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQ CCCCEEEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE TLLFSATYPTSIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLH EEEEEECCCCHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHC HQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVAT CCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEEEEE DVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDE CHHHCCCCCCCCHHEEECCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEECC YMDIAIEPSTLPQPAAGARPYAANMVTIQIDGGKKDKVRPGDILGALTSDGELTAEHIGK HHEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHEEEECCCCCEEHHHCCC INLFPMRAYVAVQKKIAHKALNKIANGKMKGRQFRARLLK EEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCC >Mature Secondary Structure MNANSFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGL CCCCCEEEEECCHHHHHCHHHCCCEEECCCCHHCCCHHHCCCCCCCCCCCCCCCCCEEHH GVLSNLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSL HHHCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCC EHGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQ CCCCEEEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE TLLFSATYPTSIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLH EEEEEECCCCHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHC HQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVAT CCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEEEEE DVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDE CHHHCCCCCCCCHHEEECCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEECC YMDIAIEPSTLPQPAAGARPYAANMVTIQIDGGKKDKVRPGDILGALTSDGELTAEHIGK HHEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHEEEECCCCCEEHHHCCC INLFPMRAYVAVQKKIAHKALNKIANGKMKGRQFRARLLK EEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2216714; 8253085; 9097039; 9278503; 9016593; 11350034 [H]