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The map label for this gene is rarD [C]

Identifier: 147673550

GI number: 147673550

Start: 2727163

End: 2728071

Strand: Reverse

Name: rarD [C]

Synonym: VC0395_A2575

Alternate gene names: 147673550

Gene position: 2728071-2727163 (Counterclockwise)

Preceding gene: 147674646

Following gene: 147674349

Centisome position: 90.21

GC content: 52.15

Gene sequence:

>909_bases
TTGTTCATGACACCCGACCAACAAGATGCCAAAAAAGGAATTTTGCTCGCGATCAGCGTATACACCATGTGGGGCATTGC
GCCGATTTATTTCAAAGCACTTGGCGCCGTATCGGCGCTGGAAATCCTTAGCCACCGGGTGGTGTGGTCATTTGTGTTGC
TCGCGGTTCTGATTCACCTCGGTCGTCGTTGGCGCAGCGTCGTTGGCGTAGTACACACTCCGCGCAAATTTTGGCTGCTG
TTAGTGACCGCTTTGCTCGTGGGGGGTAACTGGCTGATTTTTATCTGGTCAATCAACGCTAACCATATGCTGGATGCCAG
TTTGGGTTACTACATTAATCCGCTACTCAACGTGCTGCTCGGCATGCTGTTTCTCGGCGAGCGCCTGCGTAAATTGCAGT
GGTTTGCGGTCGCGCTTGCCGCGATTGGCGTGGGCATTCAGTTAGTGGTGTTTGGCTCAGTGCCGATTGTGGCGATTGCC
CTTGCCACCAGCTTTGGTTTTTATGGTCTACTGCGTAAAAAGATCCAAGTCGATGCGCAAACAGGCTTGTTCCTTGAAAC
CCTGTTTATGCTGCCTGCCGCCGCCATCTACCTAATCTGGCTCGCCGATACGCCAACCAGTGATATGGCACTCAACACTT
GGCAGCTCAATCTGCTCTTGGTTTGCGCTGGCGTCGTGACTACCTTGCCCCTGCTCTGTTTTACCGGAGCCGCAGCGCGT
CTCAAACTCTCAACGCTTGGTTTTTTTCAATATATCGGCCCGAGTTTGATGTTTTTGCTCGCAGTTTTGGTCTACGGTGA
AGCCTTTACCAGCGATAAGGCGATCACCTTTGCTTTTATTTGGAGTGCCTTGGTCATCTTCAGTGTTGATGGGTTAAAAG
CAGGACACGCCGCACGGCGTGCACGTTAG

Upstream 100 bases:

>100_bases
TACTCGGTGAATAAAACCGCAAAATACGTACAGTGTACGATTCTCAGGTTATACTTCGCTGCTACCGCCGCCAAAGCGGT
CATCACCATAACCAGAGAAG

Downstream 100 bases:

>100_bases
AGCTCGCTACCGAGGTAAGCTATCCCGGCTTACCTCCCTATTCCACCTCGTCTAACTCGTTCAATCCTGAGACATTGCTG
CATAAATCATCGATTTAGCC

Product: rarD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MFMTPDQQDAKKGILLAISVYTMWGIAPIYFKALGAVSALEILSHRVVWSFVLLAVLIHLGRRWRSVVGVVHTPRKFWLL
LVTALLVGGNWLIFIWSINANHMLDASLGYYINPLLNVLLGMLFLGERLRKLQWFAVALAAIGVGIQLVVFGSVPIVAIA
LATSFGFYGLLRKKIQVDAQTGLFLETLFMLPAAAIYLIWLADTPTSDMALNTWQLNLLLVCAGVVTTLPLLCFTGAAAR
LKLSTLGFFQYIGPSLMFLLAVLVYGEAFTSDKAITFAFIWSALVIFSVDGLKAGHAARRAR

Sequences:

>Translated_302_residues
MFMTPDQQDAKKGILLAISVYTMWGIAPIYFKALGAVSALEILSHRVVWSFVLLAVLIHLGRRWRSVVGVVHTPRKFWLL
LVTALLVGGNWLIFIWSINANHMLDASLGYYINPLLNVLLGMLFLGERLRKLQWFAVALAAIGVGIQLVVFGSVPIVAIA
LATSFGFYGLLRKKIQVDAQTGLFLETLFMLPAAAIYLIWLADTPTSDMALNTWQLNLLLVCAGVVTTLPLLCFTGAAAR
LKLSTLGFFQYIGPSLMFLLAVLVYGEAFTSDKAITFAFIWSALVIFSVDGLKAGHAARRAR
>Mature_302_residues
MFMTPDQQDAKKGILLAISVYTMWGIAPIYFKALGAVSALEILSHRVVWSFVLLAVLIHLGRRWRSVVGVVHTPRKFWLL
LVTALLVGGNWLIFIWSINANHMLDASLGYYINPLLNVLLGMLFLGERLRKLQWFAVALAAIGVGIQLVVFGSVPIVAIA
LATSFGFYGLLRKKIQVDAQTGLFLETLFMLPAAAIYLIWLADTPTSDMALNTWQLNLLLVCAGVVTTLPLLCFTGAAAR
LKLSTLGFFQYIGPSLMFLLAVLVYGEAFTSDKAITFAFIWSALVIFSVDGLKAGHAARRAR

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=295, Percent_Identity=58.3050847457627, Blast_Score=358, Evalue=1e-100,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 33207; Mature: 33207

Theoretical pI: Translated: 10.26; Mature: 10.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFMTPDQQDAKKGILLAISVYTMWGIAPIYFKALGAVSALEILSHRVVWSFVLLAVLIHL
CCCCCCHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRRWRSVVGVVHTPRKFWLLLVTALLVGGNWLIFIWSINANHMLDASLGYYINPLLNVLL
HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCEECCHHHHHHHHHHHHHH
GMLFLGERLRKLQWFAVALAAIGVGIQLVVFGSVPIVAIALATSFGFYGLLRKKIQVDAQ
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCC
TGLFLETLFMLPAAAIYLIWLADTPTSDMALNTWQLNLLLVCAGVVTTLPLLCFTGAAAR
CCHHHHHHHHHHHHHHHEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
LKLSTLGFFQYIGPSLMFLLAVLVYGEAFTSDKAITFAFIWSALVIFSVDGLKAGHAARR
EEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHC
AR
CC
>Mature Secondary Structure
MFMTPDQQDAKKGILLAISVYTMWGIAPIYFKALGAVSALEILSHRVVWSFVLLAVLIHL
CCCCCCHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRRWRSVVGVVHTPRKFWLLLVTALLVGGNWLIFIWSINANHMLDASLGYYINPLLNVLL
HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCEECCHHHHHHHHHHHHHH
GMLFLGERLRKLQWFAVALAAIGVGIQLVVFGSVPIVAIALATSFGFYGLLRKKIQVDAQ
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCC
TGLFLETLFMLPAAAIYLIWLADTPTSDMALNTWQLNLLLVCAGVVTTLPLLCFTGAAAR
CCHHHHHHHHHHHHHHHEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
LKLSTLGFFQYIGPSLMFLLAVLVYGEAFTSDKAITFAFIWSALVIFSVDGLKAGHAARR
EEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHC
AR
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]