| Definition | Vibrio cholerae O395 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_009457 |
| Length | 3,024,069 |
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The map label for this gene is 147673499
Identifier: 147673499
GI number: 147673499
Start: 2500632
End: 2501474
Strand: Reverse
Name: 147673499
Synonym: VC0395_A2345
Alternate gene names: NA
Gene position: 2501474-2500632 (Counterclockwise)
Preceding gene: 147673830
Following gene: 147674843
Centisome position: 82.72
GC content: 43.3
Gene sequence:
>843_bases GTGCTTTCTGAAAAACTCAAGCCTGAAAATGGTGGAAGCCAAAGTAAGCTTTCTGCTACCCAAACCATGCATCTAATCGA GCATTTGACTGAAAAAACTTATTTCCATACCCATCAAATCGTTGCTTACGTCGAGGCTGAATTCGCCGTTCGCTACACAG TTGCAGGCATGAATAAGTGGTTACATCACCACGGTTTTTCATACAAAAAGCCCAAAGGTGTACCGCACAAGCTAAAACCT GAAGAGCAGCAAGCATTTATCGAGTATTACAACGAGGTGCTTAAGTCCAATGATGCACCAGTGCTTTTCATGGATGCTGT TCATCCGACTCAATCAACAAAGCTCAGCTATGGCTGGATCCGTAAGGGGCAGGATAAGCTTATTGAAACGACAGGTAGTC GTACTCGAGTGAATTTAATCGGTGCTCTACCCCTGAAAGAGATTAGCGACACGATCACCGATACTTATGAGACGATAGAT AGCGAGAGTATTGTTCGCTTCTTTTGGAAGCTCAAGAAAGAGTGTTATCCACTAGAGCAAACCGTGCATATTGTGCTTGA TGGCGCAGCCTATCATCGGTCAGAAATGGTGAAGAATGCGGCAAAAGTGCTCAATATAGAGCTTCATTACTTGCCACCAT ACAGTCCAAACTTAAATCCGATAGAGCGGCTTTGGAAAGTAATGAATGAGCATGTGAGGAACAATGTCTATTTTCCCTCC AAAGCAGCATTCACCTCTGCTATCAAAAAGTTTTTTGATGTGACGCTAGCAGAAGTTGCAGGCTCACTCGCATCCAGAAT TACGGACAATTTTCAGATATTGAAACCTGCATCTTCAAGTTGA
Upstream 100 bases:
>100_bases CAAAGCGGTCTTACTTGCGTCTGAAGGTTGGAGTCAGGCGATGATTTCTTAAGCTCTTCGCATTCACGAATCGACTGTTG CACGTCACCTCAGCGACTAC
Downstream 100 bases:
>100_bases ACGGGTATATATTGGCATCGTTGCGCTTTACTGCATCAATATATTTTTCAACATACTTCTGAAATTGACTGGTTATATGT TCTTCTTTGCCGATGAGTTT
Product: transposase
Products: NA
Alternate protein names: Transposase And Inactivated Derivatives-Like Protein; Transposase Family Protein; Integrase Catalytic Region; Transposase Related Protein; Transposase And Inactivated Derivatives; Family Transposase; ISXo7 Transposase; ISRin1 Transposase OrfB; Cation Diffusion Facilitator Family Transporter; Resolvase Helix-Turn-Helix Domain Protein
Number of amino acids: Translated: 280; Mature: 280
Protein sequence:
>280_residues MLSEKLKPENGGSQSKLSATQTMHLIEHLTEKTYFHTHQIVAYVEAEFAVRYTVAGMNKWLHHHGFSYKKPKGVPHKLKP EEQQAFIEYYNEVLKSNDAPVLFMDAVHPTQSTKLSYGWIRKGQDKLIETTGSRTRVNLIGALPLKEISDTITDTYETID SESIVRFFWKLKKECYPLEQTVHIVLDGAAYHRSEMVKNAAKVLNIELHYLPPYSPNLNPIERLWKVMNEHVRNNVYFPS KAAFTSAIKKFFDVTLAEVAGSLASRITDNFQILKPASSS
Sequences:
>Translated_280_residues MLSEKLKPENGGSQSKLSATQTMHLIEHLTEKTYFHTHQIVAYVEAEFAVRYTVAGMNKWLHHHGFSYKKPKGVPHKLKP EEQQAFIEYYNEVLKSNDAPVLFMDAVHPTQSTKLSYGWIRKGQDKLIETTGSRTRVNLIGALPLKEISDTITDTYETID SESIVRFFWKLKKECYPLEQTVHIVLDGAAYHRSEMVKNAAKVLNIELHYLPPYSPNLNPIERLWKVMNEHVRNNVYFPS KAAFTSAIKKFFDVTLAEVAGSLASRITDNFQILKPASSS >Mature_280_residues MLSEKLKPENGGSQSKLSATQTMHLIEHLTEKTYFHTHQIVAYVEAEFAVRYTVAGMNKWLHHHGFSYKKPKGVPHKLKP EEQQAFIEYYNEVLKSNDAPVLFMDAVHPTQSTKLSYGWIRKGQDKLIETTGSRTRVNLIGALPLKEISDTITDTYETID SESIVRFFWKLKKECYPLEQTVHIVLDGAAYHRSEMVKNAAKVLNIELHYLPPYSPNLNPIERLWKVMNEHVRNNVYFPS KAAFTSAIKKFFDVTLAEVAGSLASRITDNFQILKPASSS
Specific function: Unknown
COG id: COG3335
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31999; Mature: 31999
Theoretical pI: Translated: 9.26; Mature: 9.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSEKLKPENGGSQSKLSATQTMHLIEHLTEKTYFHTHQIVAYVEAEFAVRYTVAGMNKW CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHH LHHHGFSYKKPKGVPHKLKPEEQQAFIEYYNEVLKSNDAPVLFMDAVHPTQSTKLSYGWI HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECHHHH RKGQDKLIETTGSRTRVNLIGALPLKEISDTITDTYETIDSESIVRFFWKLKKECYPLEQ HCCCHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHH TVHIVLDGAAYHRSEMVKNAAKVLNIELHYLPPYSPNLNPIERLWKVMNEHVRNNVYFPS EEEEEECCHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCC KAAFTSAIKKFFDVTLAEVAGSLASRITDNFQILKPASSS HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC >Mature Secondary Structure MLSEKLKPENGGSQSKLSATQTMHLIEHLTEKTYFHTHQIVAYVEAEFAVRYTVAGMNKW CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHH LHHHGFSYKKPKGVPHKLKPEEQQAFIEYYNEVLKSNDAPVLFMDAVHPTQSTKLSYGWI HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECHHHH RKGQDKLIETTGSRTRVNLIGALPLKEISDTITDTYETIDSESIVRFFWKLKKECYPLEQ HCCCHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHH TVHIVLDGAAYHRSEMVKNAAKVLNIELHYLPPYSPNLNPIERLWKVMNEHVRNNVYFPS EEEEEECCHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCC KAAFTSAIKKFFDVTLAEVAGSLASRITDNFQILKPASSS HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA