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The map label for this gene is fliR [H]

Identifier: 147673452

GI number: 147673452

Start: 1829335

End: 1830117

Strand: Reverse

Name: fliR [H]

Synonym: VC0395_A1703

Alternate gene names: 147673452

Gene position: 1830117-1829335 (Counterclockwise)

Preceding gene: 147674176

Following gene: 147674451

Centisome position: 60.52

GC content: 49.81

Gene sequence:

>783_bases
ATGGAATATCCCGCCAGTGTCGTCCTTGATTTCATCGCCAACTATTTCTGGCCGTATACCCGAATTGCGGCCATGTTGAT
GGTGATGACGGTGACTGGCGCGCGCTTTGTGCCTGCTCGAGTACGTCTCTACTTAGGGTTAGCGCTCACTTTTGCGGTGA
TGCCCGCAATTCCTGCGGTTCCTTCCGATATTGCCTTGCTCTCGCTACAAGGATTCATGATCACCTTCGAACAGATTGTG
ATCGGTGTGGCGATGGGCATGGTCACCCAGTTTTTGGTGCAAATCTTTGTCATGCTCGGTCAAATCCTCGGTATGCAATC
GAGCTTAGGTTTTGCCTCCATGGTCGACCCCGCTAACGGACAAAATACTCCGCTGCTCGGTCAGCTTTTTATGTTACTGG
CCACGCTGTTTTTCCTTGTCAGTGATGGCCATTTGAAAATGATCCAACTGGTGGTCTTCAGTTTTAAAAGTTTACCGATT
GGCAGCGGCTCACTGACGACGGTGGATTTTCGTGAGTTAGCGCTGTGGCTCGGTATCATGTTTAAAGCATCATTGGCCGT
CTCACTGTCGGGCATTATTGCACTGTTAACCGTGAACCTCTCCTTTGGGGTAATGACACGTGCGGCGCCTCAGCTCAACA
TTTTCTCGCTCGGTTTTTCGTTTGCGCTCTTGGTGGGGTTATTGCTCTGTTGGTACATCGTCCACGGTTTGTACACCCAT
TACGATATTTATTGGCAAGAGGCGGAAGAGCAAGTTTGCCGTCTCATTCGCTTAAACTGTTAG

Upstream 100 bases:

>100_bases
TAGCACTGATGTTTTTTGGGCACTGGATGACACAAATCCTGATGGACTTTTTCTACAGCATGATTGAACGCATGCCGCAG
GTTCTGTACTAGGAGTCCTT

Downstream 100 bases:

>100_bases
GAGGCTGATTTGGCAGAATCCGACGGACAAGAAAGGACTGAAGAAGCCACGCCCCGAAGGTTGCAGCAGGCCAAGGAAAA
AGGCCAAGTTGCGCGTTCGA

Product: flagellar biosynthesis protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MEYPASVVLDFIANYFWPYTRIAAMLMVMTVTGARFVPARVRLYLGLALTFAVMPAIPAVPSDIALLSLQGFMITFEQIV
IGVAMGMVTQFLVQIFVMLGQILGMQSSLGFASMVDPANGQNTPLLGQLFMLLATLFFLVSDGHLKMIQLVVFSFKSLPI
GSGSLTTVDFRELALWLGIMFKASLAVSLSGIIALLTVNLSFGVMTRAAPQLNIFSLGFSFALLVGLLLCWYIVHGLYTH
YDIYWQEAEEQVCRLIRLNC

Sequences:

>Translated_260_residues
MEYPASVVLDFIANYFWPYTRIAAMLMVMTVTGARFVPARVRLYLGLALTFAVMPAIPAVPSDIALLSLQGFMITFEQIV
IGVAMGMVTQFLVQIFVMLGQILGMQSSLGFASMVDPANGQNTPLLGQLFMLLATLFFLVSDGHLKMIQLVVFSFKSLPI
GSGSLTTVDFRELALWLGIMFKASLAVSLSGIIALLTVNLSFGVMTRAAPQLNIFSLGFSFALLVGLLLCWYIVHGLYTH
YDIYWQEAEEQVCRLIRLNC
>Mature_260_residues
MEYPASVVLDFIANYFWPYTRIAAMLMVMTVTGARFVPARVRLYLGLALTFAVMPAIPAVPSDIALLSLQGFMITFEQIV
IGVAMGMVTQFLVQIFVMLGQILGMQSSLGFASMVDPANGQNTPLLGQLFMLLATLFFLVSDGHLKMIQLVVFSFKSLPI
GSGSLTTVDFRELALWLGIMFKASLAVSLSGIIALLTVNLSFGVMTRAAPQLNIFSLGFSFALLVGLLLCWYIVHGLYTH
YDIYWQEAEEQVCRLIRLNC

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein. Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=213, Percent_Identity=39.4366197183099, Blast_Score=128, Evalue=3e-31,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 28676; Mature: 28676

Theoretical pI: Translated: 6.77; Mature: 6.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
5.8 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9324257; 11677609 [H]