| Definition | Vibrio cholerae O395 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_009457 |
| Length | 3,024,069 |
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The map label for this gene is 147673225
Identifier: 147673225
GI number: 147673225
Start: 1595193
End: 1595582
Strand: Reverse
Name: 147673225
Synonym: VC0395_A1485
Alternate gene names: NA
Gene position: 1595582-1595193 (Counterclockwise)
Preceding gene: 147674989
Following gene: 147673411
Centisome position: 52.76
GC content: 46.15
Gene sequence:
>390_bases ATGAGAACGTGGCTATTAGCAGTATTAACCGCTTTACTCTTAGTGGGATGCAGTGCTAACACTGCGGGTTTGCGAGTGGA TGGCGCATCACAGCAAGTCTTATTTAACGACAGCGCTTTAAGCAAAAGCTTAAGTATTGAGGACATTTCAACCACGGAAG TGGATGGACATACTCGAGGCGTGGTTCGTTTGCAGAGTAACCAAAAAAGCGATGTGCATGTGCAGTACCGTTTTTATTGG TATGACAATGATGGGCTTGAAGTGAATACCAAGTTAAGCCCATGGAAAACCATCATTTTGCGAGGCATGGAAACCGTGTC ACTGACTGAGGTTTCGGTGAACCCGAACGGTAAGCAGTTTCGCGTCCAGATCCGCGAAAGCGATCAATAA
Upstream 100 bases:
>100_bases ACTATACCTTTCATGTTCCAGAAAATGGCACAGTGTTAGTTTGGCTATCTCACCAAGGTAACAATGTGACAATTTGGCAT AAACAACTAGGGATACGGTA
Downstream 100 bases:
>100_bases AAAAGCGGTCGAATAAGCGATCGATAAAAATACGTTTTTAAGAGGAATCACGATGAAAAAAAGTGTCATTGCCCTGCTAG GTTTGGCGGTTATCTTAGGG
Product: putative lipoprotein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 129; Mature: 129
Protein sequence:
>129_residues MRTWLLAVLTALLLVGCSANTAGLRVDGASQQVLFNDSALSKSLSIEDISTTEVDGHTRGVVRLQSNQKSDVHVQYRFYW YDNDGLEVNTKLSPWKTIILRGMETVSLTEVSVNPNGKQFRVQIRESDQ
Sequences:
>Translated_129_residues MRTWLLAVLTALLLVGCSANTAGLRVDGASQQVLFNDSALSKSLSIEDISTTEVDGHTRGVVRLQSNQKSDVHVQYRFYW YDNDGLEVNTKLSPWKTIILRGMETVSLTEVSVNPNGKQFRVQIRESDQ >Mature_129_residues MRTWLLAVLTALLLVGCSANTAGLRVDGASQQVLFNDSALSKSLSIEDISTTEVDGHTRGVVRLQSNQKSDVHVQYRFYW YDNDGLEVNTKLSPWKTIILRGMETVSLTEVSVNPNGKQFRVQIRESDQ
Specific function: Unknown
COG id: COG5633
COG function: function code R; Predicted periplasmic lipoprotein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14428; Mature: 14428
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTWLLAVLTALLLVGCSANTAGLRVDGASQQVLFNDSALSKSLSIEDISTTEVDGHTRG CCHHHHHHHHHHHHCCCCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCEEECCCCEE VVRLQSNQKSDVHVQYRFYWYDNDGLEVNTKLSPWKTIILRGMETVSLTEVSVNPNGKQF EEEECCCCCCCEEEEEEEEEECCCCEEEECCCCCHHEEEECCCCEEEEEEEEECCCCCEE RVQIRESDQ EEEEEECCC >Mature Secondary Structure MRTWLLAVLTALLLVGCSANTAGLRVDGASQQVLFNDSALSKSLSIEDISTTEVDGHTRG CCHHHHHHHHHHHHCCCCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCEEECCCCEE VVRLQSNQKSDVHVQYRFYWYDNDGLEVNTKLSPWKTIILRGMETVSLTEVSVNPNGKQF EEEECCCCCCCEEEEEEEEEECCCCEEEECCCCCHHEEEECCCCEEEEEEEEECCCCCEE RVQIRESDQ EEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA