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The map label for this gene is ypdC [H]

Identifier: 147673124

GI number: 147673124

Start: 1519292

End: 1520131

Strand: Reverse

Name: ypdC [H]

Synonym: VC0395_A1419

Alternate gene names: 147673124

Gene position: 1520131-1519292 (Counterclockwise)

Preceding gene: 147675599

Following gene: 147673546

Centisome position: 50.27

GC content: 42.74

Gene sequence:

>840_bases
ATGATATTTGATGATTTGATTTCCTCGGTGCTTAATGAGCGTGAATCATTTCATCATATTTGGTTTGCGGGTGATTTTCA
TACACCGCCTGAATTCAGTTATCAGGTGAATTTTCCACGCTTAGAATTGGTCTTAGGTGGAGAGTATATAAATGAAATGG
AAAGTCATGACCGTAAAGTCACGAAAATAATTGCCAAAGCCGGAGATGCGATTTTTATTCCCGCTAACTGTTGGAATAAA
CCGAACTGGGATACCGATTGCTCAGTGTTGAGCATGTTATTTGGACGCCGCCAACTAGGACTGAGTTTTGTCAGTAAGCG
CAAAGGCGAAGCCAACTTTTATGATATTCAAAAGCACAGTATCCAAACGCGCTCAGGGTTTGCTATTGATAACATCTTAG
AAGCGCTCAGCTCATTGGCGCGTGAGAATTATAAAAAACCGATGGATGAGCTGTTGCTGCAAGCTCTCCTTCAATATACC
CAGACGATGTTGAATGCGCCGACAGAGCAGCCACAAAACCGAGTGCAGGATCTCTACCAAGGGATCTGTATCTATATCCA
AGAGAATTTTCACCGCCCGATCACGCGAGAAAGTATTGCTTCGCGTTTTAGTATCTCTGCCAACCATTTATCGAGGCTGT
TTCGCCAGCAAGGGCATATGACCTTGGCCGATTACATTACGTGGGTCAGGGTTGATAGAGCAAAATTTATGCTGAAAAAG
TACAATTTTAAGCTCAATGAAGTGTCGCTACGTTGTGGGTTTAAAGATGTGAATTACTTCTGCCGCGTTTTCAAAAATCG
TACAGGCCGTACACCAACGGATTATCGTGCTTCAATTTAA

Upstream 100 bases:

>100_bases
ATCATTCTGTCTTGAGTGTGATGTTGCTCAAAGAGACTCAATGGCATTCGGGGTATATCTGACGTTAATAAAAGTGCGAT
GACGAAGTGAGGGTTTACAT

Downstream 100 bases:

>100_bases
CAGGCGTGACATCGCGTACATCAGTAGAGCTTGTAAATCAACGCCGCTGCGTGTCAGTAGTAAACGTTCTACCATTTGAT
CGCACAGTAAATTTCGGGTC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MIFDDLISSVLNERESFHHIWFAGDFHTPPEFSYQVNFPRLELVLGGEYINEMESHDRKVTKIIAKAGDAIFIPANCWNK
PNWDTDCSVLSMLFGRRQLGLSFVSKRKGEANFYDIQKHSIQTRSGFAIDNILEALSSLARENYKKPMDELLLQALLQYT
QTMLNAPTEQPQNRVQDLYQGICIYIQENFHRPITRESIASRFSISANHLSRLFRQQGHMTLADYITWVRVDRAKFMLKK
YNFKLNEVSLRCGFKDVNYFCRVFKNRTGRTPTDYRASI

Sequences:

>Translated_279_residues
MIFDDLISSVLNERESFHHIWFAGDFHTPPEFSYQVNFPRLELVLGGEYINEMESHDRKVTKIIAKAGDAIFIPANCWNK
PNWDTDCSVLSMLFGRRQLGLSFVSKRKGEANFYDIQKHSIQTRSGFAIDNILEALSSLARENYKKPMDELLLQALLQYT
QTMLNAPTEQPQNRVQDLYQGICIYIQENFHRPITRESIASRFSISANHLSRLFRQQGHMTLADYITWVRVDRAKFMLKK
YNFKLNEVSLRCGFKDVNYFCRVFKNRTGRTPTDYRASI
>Mature_279_residues
MIFDDLISSVLNERESFHHIWFAGDFHTPPEFSYQVNFPRLELVLGGEYINEMESHDRKVTKIIAKAGDAIFIPANCWNK
PNWDTDCSVLSMLFGRRQLGLSFVSKRKGEANFYDIQKHSIQTRSGFAIDNILEALSSLARENYKKPMDELLLQALLQYT
QTMLNAPTEQPQNRVQDLYQGICIYIQENFHRPITRESIASRFSISANHLSRLFRQQGHMTLADYITWVRVDRAKFMLKK
YNFKLNEVSLRCGFKDVNYFCRVFKNRTGRTPTDYRASI

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788725, Length=277, Percent_Identity=36.8231046931408, Blast_Score=191, Evalue=6e-50,
Organism=Escherichia coli, GI1790391, Length=271, Percent_Identity=34.6863468634686, Blast_Score=172, Evalue=2e-44,
Organism=Escherichia coli, GI171474011, Length=133, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32616; Mature: 32616

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFDDLISSVLNERESFHHIWFAGDFHTPPEFSYQVNFPRLELVLGGEYINEMESHDRKV
CCHHHHHHHHHHHHHHHCEEEEECCCCCCCCCEEEECCCEEEEEECHHHHHHHHHHHHHH
TKIIAKAGDAIFIPANCWNKPNWDTDCSVLSMLFGRRQLGLSFVSKRKGEANFYDIQKHS
HHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHH
IQTRSGFAIDNILEALSSLARENYKKPMDELLLQALLQYTQTMLNAPTEQPQNRVQDLYQ
CCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
GICIYIQENFHRPITRESIASRFSISANHLSRLFRQQGHMTLADYITWVRVDRAKFMLKK
HHEEEEHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
YNFKLNEVSLRCGFKDVNYFCRVFKNRTGRTPTDYRASI
HCCCEEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MIFDDLISSVLNERESFHHIWFAGDFHTPPEFSYQVNFPRLELVLGGEYINEMESHDRKV
CCHHHHHHHHHHHHHHHCEEEEECCCCCCCCCEEEECCCEEEEEECHHHHHHHHHHHHHH
TKIIAKAGDAIFIPANCWNKPNWDTDCSVLSMLFGRRQLGLSFVSKRKGEANFYDIQKHS
HHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHH
IQTRSGFAIDNILEALSSLARENYKKPMDELLLQALLQYTQTMLNAPTEQPQNRVQDLYQ
CCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
GICIYIQENFHRPITRESIASRFSISANHLSRLFRQQGHMTLADYITWVRVDRAKFMLKK
HHEEEEHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
YNFKLNEVSLRCGFKDVNYFCRVFKNRTGRTPTDYRASI
HCCCEEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]