Click here to switch to the map view.

The map label for this gene is rpmE2

Identifier: 147673049

GI number: 147673049

Start: 431365

End: 431622

Strand: Direct

Name: rpmE2

Synonym: VC0395_A0402

Alternate gene names: 147673049

Gene position: 431365-431622 (Clockwise)

Preceding gene: 147675515

Following gene: 147674880

Centisome position: 14.26

GC content: 44.96

Gene sequence:

>258_bases
ATGAAAGCAGGCATTCATCCCGATTACCGTAAAGTGGTGTTCCACGATACCACGGTTGATCACTATTTTGTAGTTGGTTC
TACTTTGCAAACCGATCGCACTATTGAGTGGGAAGGCAAAACTTACCCCTACATTACCATCGAGGTTTCGTCAGAATCTC
ACCCGTTCTATACCGGTAAACAACGTGTGGTACAAAAAGAAGGTCGCGTTGCGAACTTCACTCGTCGTTTCGGTCAGTTT
GCTAAGGAGTCAAAATGA

Upstream 100 bases:

>100_bases
AAAATAGCATAGCTAGACGTAAAAATCGCTTGCAAATCACCTTGAGAATAATTATTAATTAAAATGTTATAACATAACAA
TTTGAGGTTTTGAGTTTAAG

Downstream 100 bases:

>100_bases
AAGTGCTCAGCTCGCTAAAAAGCGCTAAAAATCGTCACCCAGATTGTCAAATCGTCAAACGCCGTGGCCGTTTGTATGTG
ATCTGCAAATCAAATCCTCG

Product: 50S ribosomal protein L31 type B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 85; Mature: 85

Protein sequence:

>85_residues
MKAGIHPDYRKVVFHDTTVDHYFVVGSTLQTDRTIEWEGKTYPYITIEVSSESHPFYTGKQRVVQKEGRVANFTRRFGQF
AKESK

Sequences:

>Translated_85_residues
MKAGIHPDYRKVVFHDTTVDHYFVVGSTLQTDRTIEWEGKTYPYITIEVSSESHPFYTGKQRVVQKEGRVANFTRRFGQF
AKESK
>Mature_85_residues
MKAGIHPDYRKVVFHDTTVDHYFVVGSTLQTDRTIEWEGKTYPYITIEVSSESHPFYTGKQRVVQKEGRVANFTRRFGQF
AKESK

Specific function: Unknown

COG id: COG0254

COG function: function code J; Ribosomal protein L31

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L31P family. Type B subfamily

Homologues:

Organism=Escherichia coli, GI2367109, Length=85, Percent_Identity=65.8823529411765, Blast_Score=121, Evalue=7e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL31B_VIBC3 (A5F342)

Other databases:

- EMBL:   CP000627
- EMBL:   CP001235
- ProteinModelPortal:   A5F342
- SMR:   A5F342
- STRING:   A5F342
- GenomeReviews:   CP000627_GR
- GenomeReviews:   CP001235_GR
- KEGG:   vco:VC0395_A0402
- eggNOG:   COG0254
- HOGENOM:   HBG610087
- OMA:   QFLTRST
- ProtClustDB:   PRK01678
- BioCyc:   VCHO345073:VC0395_A0402-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00502
- InterPro:   IPR002150
- PRINTS:   PR01249
- TIGRFAMs:   TIGR00105

Pfam domain/function: PF01197 Ribosomal_L31

EC number: NA

Molecular weight: Translated: 9929; Mature: 9929

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: PS01143 RIBOSOMAL_L31

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAGIHPDYRKVVFHDTTVDHYFVVGSTLQTDRTIEWEGKTYPYITIEVSSESHPFYTGK
CCCCCCCCCEEEEEECCCCCEEEEECCEECCCCEEEECCCCCCEEEEEECCCCCCEECCH
QRVVQKEGRVANFTRRFGQFAKESK
HHHHHHCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKAGIHPDYRKVVFHDTTVDHYFVVGSTLQTDRTIEWEGKTYPYITIEVSSESHPFYTGK
CCCCCCCCCEEEEEECCCCCEEEEECCEECCCCEEEECCCCCCEEEEEECCCCCCEECCH
QRVVQKEGRVANFTRRFGQFAKESK
HHHHHHCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA