| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is yaaU [H]
Identifier: 146343708
GI number: 146343708
Start: 7238345
End: 7239859
Strand: Reverse
Name: yaaU [H]
Synonym: BRADO6954
Alternate gene names: 146343708
Gene position: 7239859-7238345 (Counterclockwise)
Preceding gene: 146343709
Following gene: 146343707
Centisome position: 97.09
GC content: 66.2
Gene sequence:
>1515_bases ATGGCACCCCGGCAGGCATCCTTTCCCCATCTCCGCGTCATCACCTCGACGCCGCAATCCAGCGAAACCGCGCGCGAGCC GTCGCGCGACGACAACATCATCGAGACCAACATTCCCGCGCGGCTCGATGACCTGCGCTGGAGCGCGTTCCACACCCGCG TCGTGCTGGCGCTGGGCATCACCTGGGTGCTCGACGGGCTCGAGGTGACGCTTGCCGGCGCGCTGTCGGGCGCGCTGAAG CAGAGCCCGAGCCTTCACTTCTCCAATCTCGACATCGGGCTCGCCAACAGCGCCTATCTCGCCGGCGCCGTGCTCGGCGC GCTCGGCTTCGGCTGGCTCACCGACCGCATCGGCCGCCGCAAGCTGTTCTTCATCACGCTGGCACTCTATCTCTCCGCCA CCGCCGCCACCGCGCTGTCCTGGAACGTCGCGACCTACGCGCTGTTTCGCTTTCTCACCGGCGCCGGAATCGGCGGGGAG TACACCGCGATCAATTCGACGATCCAGGAGCTGGTGCCGGCGCGCTATCGCGGCTGGACCGATCTCATGATCAACGGCAG CTTCTGGCTTGGCGCCGCGCTCGGCGCCGTCGGCGCTATCGTCCTGCTGGATCCCGCTTTCGCCGGCCCCGACGTCGGCT GGCGGCTGGCCTATGGCATCGGCGCCTGTCTCGGTCTCGTCGTGCTGATCATGCGGATGTGGATTCCGGAAAGCCCGCGC TGGCTGATGATCCATGGCCATCCCGAACAGGCGCATGACATCGTCGTGGCGATCGAGCGCGACGTCACGGGGCACGATCG CGAAGCGCGCGCGAAAGCTCTGCCCAAGATGAAGCTGCGCATGCGCGACCATACGCCGCTCGGCGAGGTGGCGCGCACGC TGTTCTCGGTCTATCGCCAGCGCTCCCTCGTCGGCCTCACCTTAATGATCGCGCAAGCGTTCTTCTACAACGCGATCTTT TTCACCTTCGCGCTGGTGTTGACCGATTTCTACGGCATCAAGTCTGACCATGTCGGCTGGTACATACTGCCTTTCGCAGC GGGCAATGTGCTCGGGCCGCTGCTGCTCGGCCGTCTGTTCGACACGCTCGGCCGTCGCGCGATGATCACGTTCACCTATG CCGTGTCCGGTATCTTGCTGGCGTTGACCGGCTACCTGTTCTCGGTCGGCGTGCTCAGTGCGCAAACGCAGACCGCCGCC TGGATGGTGATCTTCTTCTTCGCCTCGCCGGCGGCGAGCGCCGCCTATCTCACGGTGTCGGAGAACTTTCCGCTGGAGGT CCGCGCGCTCGCGATCGCTCTGTTCTATGCCATCGGCACCGGCATCGGCGGGGTGGCTGGACCTGCATTGTTCGGCGCGC TGCTCGATTCAGGCGCACGCGGCGCGGTGTTCGCGGGCTATCTGTTCGGTGCCGGCCTGATGCTGGTCGCTGCGCTCGTC GCCTGGCGCTATGCGGTGGCGGCGGAGCGCAAATCGCTCGAGCAGGTCGCGCGTCCGCTCGCCGTGATGGAGTAG
Upstream 100 bases:
>100_bases CGAGACGTTGGGTCGCAGCGGCAGGACATCGCTGCCGCATTTGCTTCATCCTTTCCGGTCAAGCTCTCGGTGCCGTCTCG CGCCGTCGCAGTGGGATTCC
Downstream 100 bases:
>100_bases TTGAGAATGCCTGAGAATTCCGACCTGATCGTCCCCGGCGCCGCGGAGCCGGCCGAGATCGTGCCGACGCCCCTGAGCCT CGTGCCGCATCTGCGCGAGG
Product: major facilitator superfamily (MFS) transporter/sugar transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 504; Mature: 503
Protein sequence:
>504_residues MAPRQASFPHLRVITSTPQSSETAREPSRDDNIIETNIPARLDDLRWSAFHTRVVLALGITWVLDGLEVTLAGALSGALK QSPSLHFSNLDIGLANSAYLAGAVLGALGFGWLTDRIGRRKLFFITLALYLSATAATALSWNVATYALFRFLTGAGIGGE YTAINSTIQELVPARYRGWTDLMINGSFWLGAALGAVGAIVLLDPAFAGPDVGWRLAYGIGACLGLVVLIMRMWIPESPR WLMIHGHPEQAHDIVVAIERDVTGHDREARAKALPKMKLRMRDHTPLGEVARTLFSVYRQRSLVGLTLMIAQAFFYNAIF FTFALVLTDFYGIKSDHVGWYILPFAAGNVLGPLLLGRLFDTLGRRAMITFTYAVSGILLALTGYLFSVGVLSAQTQTAA WMVIFFFASPAASAAYLTVSENFPLEVRALAIALFYAIGTGIGGVAGPALFGALLDSGARGAVFAGYLFGAGLMLVAALV AWRYAVAAERKSLEQVARPLAVME
Sequences:
>Translated_504_residues MAPRQASFPHLRVITSTPQSSETAREPSRDDNIIETNIPARLDDLRWSAFHTRVVLALGITWVLDGLEVTLAGALSGALK QSPSLHFSNLDIGLANSAYLAGAVLGALGFGWLTDRIGRRKLFFITLALYLSATAATALSWNVATYALFRFLTGAGIGGE YTAINSTIQELVPARYRGWTDLMINGSFWLGAALGAVGAIVLLDPAFAGPDVGWRLAYGIGACLGLVVLIMRMWIPESPR WLMIHGHPEQAHDIVVAIERDVTGHDREARAKALPKMKLRMRDHTPLGEVARTLFSVYRQRSLVGLTLMIAQAFFYNAIF FTFALVLTDFYGIKSDHVGWYILPFAAGNVLGPLLLGRLFDTLGRRAMITFTYAVSGILLALTGYLFSVGVLSAQTQTAA WMVIFFFASPAASAAYLTVSENFPLEVRALAIALFYAIGTGIGGVAGPALFGALLDSGARGAVFAGYLFGAGLMLVAALV AWRYAVAAERKSLEQVARPLAVME >Mature_503_residues APRQASFPHLRVITSTPQSSETAREPSRDDNIIETNIPARLDDLRWSAFHTRVVLALGITWVLDGLEVTLAGALSGALKQ SPSLHFSNLDIGLANSAYLAGAVLGALGFGWLTDRIGRRKLFFITLALYLSATAATALSWNVATYALFRFLTGAGIGGEY TAINSTIQELVPARYRGWTDLMINGSFWLGAALGAVGAIVLLDPAFAGPDVGWRLAYGIGACLGLVVLIMRMWIPESPRW LMIHGHPEQAHDIVVAIERDVTGHDREARAKALPKMKLRMRDHTPLGEVARTLFSVYRQRSLVGLTLMIAQAFFYNAIFF TFALVLTDFYGIKSDHVGWYILPFAAGNVLGPLLLGRLFDTLGRRAMITFTYAVSGILLALTGYLFSVGVLSAQTQTAAW MVIFFFASPAASAAYLTVSENFPLEVRALAIALFYAIGTGIGGVAGPALFGALLDSGARGAVFAGYLFGAGLMLVAALVA WRYAVAAERKSLEQVARPLAVME
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]
Homologues:
Organism=Homo sapiens, GI296080721, Length=272, Percent_Identity=27.9411764705882, Blast_Score=79, Evalue=1e-14, Organism=Homo sapiens, GI296080734, Length=266, Percent_Identity=27.8195488721804, Blast_Score=78, Evalue=2e-14, Organism=Homo sapiens, GI296080719, Length=272, Percent_Identity=27.9411764705882, Blast_Score=77, Evalue=3e-14, Organism=Homo sapiens, GI24497499, Length=272, Percent_Identity=27.9411764705882, Blast_Score=77, Evalue=3e-14, Organism=Homo sapiens, GI213021148, Length=522, Percent_Identity=22.7969348659004, Blast_Score=75, Evalue=1e-13, Organism=Homo sapiens, GI24497497, Length=378, Percent_Identity=24.8677248677249, Blast_Score=68, Evalue=2e-11, Organism=Homo sapiens, GI90669191, Length=378, Percent_Identity=24.8677248677249, Blast_Score=68, Evalue=2e-11, Organism=Homo sapiens, GI24308167, Length=500, Percent_Identity=23, Blast_Score=66, Evalue=7e-11, Organism=Homo sapiens, GI166197673, Length=235, Percent_Identity=27.2340425531915, Blast_Score=66, Evalue=7e-11, Organism=Escherichia coli, GI1786229, Length=476, Percent_Identity=25.4201680672269, Blast_Score=110, Evalue=3e-25, Organism=Escherichia coli, GI87082159, Length=222, Percent_Identity=30.1801801801802, Blast_Score=85, Evalue=9e-18, Organism=Escherichia coli, GI1788074, Length=453, Percent_Identity=26.7108167770419, Blast_Score=81, Evalue=1e-16, Organism=Escherichia coli, GI1788068, Length=474, Percent_Identity=24.6835443037975, Blast_Score=76, Evalue=4e-15, Organism=Escherichia coli, GI1789312, Length=413, Percent_Identity=25.181598062954, Blast_Score=75, Evalue=1e-14, Organism=Escherichia coli, GI1790550, Length=412, Percent_Identity=25.2427184466019, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI87081723, Length=154, Percent_Identity=29.8701298701299, Blast_Score=62, Evalue=6e-11, Organism=Caenorhabditis elegans, GI32564663, Length=449, Percent_Identity=25.3897550111359, Blast_Score=80, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17565976, Length=310, Percent_Identity=22.5806451612903, Blast_Score=72, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17565978, Length=298, Percent_Identity=23.489932885906, Blast_Score=69, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17543784, Length=371, Percent_Identity=24.7978436657682, Blast_Score=66, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6323653, Length=471, Percent_Identity=24.8407643312102, Blast_Score=78, Evalue=4e-15, Organism=Saccharomyces cerevisiae, GI6322618, Length=387, Percent_Identity=24.5478036175711, Blast_Score=70, Evalue=8e-13, Organism=Saccharomyces cerevisiae, GI6320766, Length=389, Percent_Identity=24.9357326478149, Blast_Score=70, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6319956, Length=387, Percent_Identity=24.5478036175711, Blast_Score=69, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6324400, Length=389, Percent_Identity=24.9357326478149, Blast_Score=69, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6323512, Length=169, Percent_Identity=30.7692307692308, Blast_Score=67, Evalue=6e-12, Organism=Saccharomyces cerevisiae, GI6321886, Length=377, Percent_Identity=23.342175066313, Blast_Score=64, Evalue=6e-11, Organism=Drosophila melanogaster, GI24649618, Length=368, Percent_Identity=24.4565217391304, Blast_Score=73, Evalue=4e-13, Organism=Drosophila melanogaster, GI24652793, Length=496, Percent_Identity=23.1854838709677, Blast_Score=72, Evalue=1e-12, Organism=Drosophila melanogaster, GI24652795, Length=422, Percent_Identity=23.4597156398104, Blast_Score=72, Evalue=1e-12, Organism=Drosophila melanogaster, GI221330907, Length=360, Percent_Identity=24.1666666666667, Blast_Score=70, Evalue=4e-12, Organism=Drosophila melanogaster, GI24640198, Length=440, Percent_Identity=24.0909090909091, Blast_Score=68, Evalue=2e-11, Organism=Drosophila melanogaster, GI24640196, Length=440, Percent_Identity=24.0909090909091, Blast_Score=68, Evalue=2e-11, Organism=Drosophila melanogaster, GI24640200, Length=440, Percent_Identity=24.0909090909091, Blast_Score=68, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR016196 - InterPro: IPR005828 [H]
Pfam domain/function: PF00083 Sugar_tr [H]
EC number: NA
Molecular weight: Translated: 54383; Mature: 54252
Theoretical pI: Translated: 9.45; Mature: 9.45
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAPRQASFPHLRVITSTPQSSETAREPSRDDNIIETNIPARLDDLRWSAFHTRVVLALGI CCCCCCCCCEEEEEECCCCCCHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHH TWVLDGLEVTLAGALSGALKQSPSLHFSNLDIGLANSAYLAGAVLGALGFGWLTDRIGRR HHHHCCHHHHHHHHHHHHHHCCCCCEECCCCEECCCCHHHHHHHHHHHHHHHHHHHHCCH KLFFITLALYLSATAATALSWNVATYALFRFLTGAGIGGEYTAINSTIQELVPARYRGWT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCE DLMINGSFWLGAALGAVGAIVLLDPAFAGPDVGWRLAYGIGACLGLVVLIMRMWIPESPR EEEEECCHHHHHHHHHHCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC WLMIHGHPEQAHDIVVAIERDVTGHDREARAKALPKMKLRMRDHTPLGEVARTLFSVYRQ EEEEECCCCCCCCEEEEEECCCCCCCHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHH RSLVGLTLMIAQAFFYNAIFFTFALVLTDFYGIKSDHVGWYILPFAAGNVLGPLLLGRLF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHH DTLGRRAMITFTYAVSGILLALTGYLFSVGVLSAQTQTAAWMVIFFFASPAASAAYLTVS HHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHEECCCCCCCEEEEEEC ENFPLEVRALAIALFYAIGTGIGGVAGPALFGALLDSGARGAVFAGYLFGAGLMLVAALV CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH AWRYAVAAERKSLEQVARPLAVME HHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure APRQASFPHLRVITSTPQSSETAREPSRDDNIIETNIPARLDDLRWSAFHTRVVLALGI CCCCCCCCEEEEEECCCCCCHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHH TWVLDGLEVTLAGALSGALKQSPSLHFSNLDIGLANSAYLAGAVLGALGFGWLTDRIGRR HHHHCCHHHHHHHHHHHHHHCCCCCEECCCCEECCCCHHHHHHHHHHHHHHHHHHHHCCH KLFFITLALYLSATAATALSWNVATYALFRFLTGAGIGGEYTAINSTIQELVPARYRGWT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCE DLMINGSFWLGAALGAVGAIVLLDPAFAGPDVGWRLAYGIGACLGLVVLIMRMWIPESPR EEEEECCHHHHHHHHHHCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC WLMIHGHPEQAHDIVVAIERDVTGHDREARAKALPKMKLRMRDHTPLGEVARTLFSVYRQ EEEEECCCCCCCCEEEEEECCCCCCCHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHH RSLVGLTLMIAQAFFYNAIFFTFALVLTDFYGIKSDHVGWYILPFAAGNVLGPLLLGRLF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHH DTLGRRAMITFTYAVSGILLALTGYLFSVGVLSAQTQTAAWMVIFFFASPAASAAYLTVS HHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHEECCCCCCCEEEEEEC ENFPLEVRALAIALFYAIGTGIGGVAGPALFGALLDSGARGAVFAGYLFGAGLMLVAALV CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH AWRYAVAAERKSLEQVARPLAVME HHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1630901; 9278503 [H]