Click here to switch to the map view.

The map label for this gene is ycgF [H]

Identifier: 146343677

GI number: 146343677

Start: 7194323

End: 7195099

Strand: Reverse

Name: ycgF [H]

Synonym: BRADO6920

Alternate gene names: 146343677

Gene position: 7195099-7194323 (Counterclockwise)

Preceding gene: 146343678

Following gene: 146343675

Centisome position: 96.49

GC content: 66.92

Gene sequence:

>777_bases
ATGATGGCTGGGGCCTGCGCGGGCTGCGCTGACGGAACCGAATTGCCGTTTGCGTTCAAGATGGCGTTTCAGCCGATCGT
CGATGTCGGCGCGCATCGGATCTGGGGTTATGAGGCGCTGGTGCGCGGTCCCAACGGCGAGGGCGCGCACAGCGTGCTGT
CGCAGCTGACCGAGGCGCAGCTCTACCGCTTCGACCAGTCGGCGCGCGTGCTGGCGATCGAGACCGCCGGTCGCCTGTTC
ACCGACGCCAGCGCGCGGCTGTCGATCAATTTCATGCCCAACGCGGTCTACGAGCCGCGCGCCTGCATCCAGAAGTCGCT
CGCGGCGGCGAAGCGCGCCAGCTTCCCGCCGCAAAACCTGATGTTCGAGTTCACCGAGAACGAGCGCATGGCGAGCCCCG
ACCATGTCGAGCGCATCGTCAAGAGCTACAAGGAGCTCGGCTTCTGGACCGCGCTCGACGATTTCGGCGCCGGCTATGCC
GGCCTCAATCTCCTGGCCCGACTGCAGCCGAATTTGATCAAGATCGACATGGAGCTGCTGCGCGACATTCACCGCGACTA
CGCCAAGCAGGTCATCGTGGCGGGGGTCGCGGCGATGGCGCGGCAACTCGACATCGCGGTGCTGGCCGAGGGTGTCGAGA
GCGAGGCCGAGTTCGCTGTGCTCCGCTCGGCCGGCATCAACCTGTTCCAGGGCTACTTCTTCGCCAAGCCGGCCCTGATG
GCGCTGCCCGAGGTGGCCTGGCTCGCCGAACCCGCGCGCGATCGGGCGGTCGGCTGA

Upstream 100 bases:

>100_bases
CTCCGCCAGCCGTCGAGACCCCTTATCATGCCGCCTGCCGCCGCCTTCCGTATTTGTTAAGATCGCATCCGTAGTGTCCC
GGAGGTAACCTGGGAGATCG

Downstream 100 bases:

>100_bases
TCGGTCCGCCGTCCTCAGACATCCTTCGCGCTGTCGCCGGCCGTCACCTCATACTCCGCGCCCGTCACCATCGCCGCCGC
AACGGACGCGAGGAACACCG

Product: hypothetical protein

Products: NA

Alternate protein names: Blrp [H]

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MMAGACAGCADGTELPFAFKMAFQPIVDVGAHRIWGYEALVRGPNGEGAHSVLSQLTEAQLYRFDQSARVLAIETAGRLF
TDASARLSINFMPNAVYEPRACIQKSLAAAKRASFPPQNLMFEFTENERMASPDHVERIVKSYKELGFWTALDDFGAGYA
GLNLLARLQPNLIKIDMELLRDIHRDYAKQVIVAGVAAMARQLDIAVLAEGVESEAEFAVLRSAGINLFQGYFFAKPALM
ALPEVAWLAEPARDRAVG

Sequences:

>Translated_258_residues
MMAGACAGCADGTELPFAFKMAFQPIVDVGAHRIWGYEALVRGPNGEGAHSVLSQLTEAQLYRFDQSARVLAIETAGRLF
TDASARLSINFMPNAVYEPRACIQKSLAAAKRASFPPQNLMFEFTENERMASPDHVERIVKSYKELGFWTALDDFGAGYA
GLNLLARLQPNLIKIDMELLRDIHRDYAKQVIVAGVAAMARQLDIAVLAEGVESEAEFAVLRSAGINLFQGYFFAKPALM
ALPEVAWLAEPARDRAVG
>Mature_258_residues
MMAGACAGCADGTELPFAFKMAFQPIVDVGAHRIWGYEALVRGPNGEGAHSVLSQLTEAQLYRFDQSARVLAIETAGRLF
TDASARLSINFMPNAVYEPRACIQKSLAAAKRASFPPQNLMFEFTENERMASPDHVERIVKSYKELGFWTALDDFGAGYA
GLNLLARLQPNLIKIDMELLRDIHRDYAKQVIVAGVAAMARQLDIAVLAEGVESEAEFAVLRSAGINLFQGYFFAKPALM
ALPEVAWLAEPARDRAVG

Specific function: Binds to and releases the YcgE repressor from its bound DNA target in a blue-light-dependent (470 nm) fashion. A shift to low temperature also triggers a YcgF-medisted relief of repression by YcgE, suggesting YcgF may serve as a thermometer. Blue light ma

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 EAL domain [H]

Homologues:

Organism=Escherichia coli, GI1787410, Length=227, Percent_Identity=36.5638766519824, Blast_Score=137, Evalue=9e-34,
Organism=Escherichia coli, GI1790496, Length=255, Percent_Identity=28.2352941176471, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1787541, Length=125, Percent_Identity=40, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI87082096, Length=161, Percent_Identity=31.6770186335404, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI87081980, Length=243, Percent_Identity=26.7489711934156, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI226510982, Length=245, Percent_Identity=26.9387755102041, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1788849, Length=173, Percent_Identity=32.9479768786127, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI87081845, Length=244, Percent_Identity=28.2786885245902, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788502, Length=249, Percent_Identity=26.9076305220884, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI87081921, Length=232, Percent_Identity=23.2758620689655, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787055, Length=236, Percent_Identity=30.9322033898305, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI87081743, Length=228, Percent_Identity=28.5087719298246, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1786507, Length=119, Percent_Identity=29.4117647058824, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001792
- InterPro:   IPR007024
- InterPro:   IPR001633 [H]

Pfam domain/function: PF04940 BLUF; PF00563 EAL [H]

EC number: NA

Molecular weight: Translated: 28245; Mature: 28245

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMAGACAGCADGTELPFAFKMAFQPIVDVGAHRIWGYEALVRGPNGEGAHSVLSQLTEAQ
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHEEECCCCCCHHHHHHHHHHHH
LYRFDQSARVLAIETAGRLFTDASARLSINFMPNAVYEPRACIQKSLAAAKRASFPPQNL
HHHCCCCCEEEEEECCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCHHH
MFEFTENERMASPDHVERIVKSYKELGFWTALDDFGAGYAGLNLLARLQPNLIKIDMELL
EEEECCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHCCCCCEEHHHHHH
RDIHRDYAKQVIVAGVAAMARQLDIAVLAEGVESEAEFAVLRSAGINLFQGYFFAKPALM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHCHHHH
ALPEVAWLAEPARDRAVG
HHHHHHHHCCCCHHCCCC
>Mature Secondary Structure
MMAGACAGCADGTELPFAFKMAFQPIVDVGAHRIWGYEALVRGPNGEGAHSVLSQLTEAQ
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHEEECCCCCCHHHHHHHHHHHH
LYRFDQSARVLAIETAGRLFTDASARLSINFMPNAVYEPRACIQKSLAAAKRASFPPQNL
HHHCCCCCEEEEEECCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCHHH
MFEFTENERMASPDHVERIVKSYKELGFWTALDDFGAGYAGLNLLARLQPNLIKIDMELL
EEEECCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHCCCCCEEHHHHHH
RDIHRDYAKQVIVAGVAAMARQLDIAVLAEGVESEAEFAVLRSAGINLFQGYFFAKPALM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHCHHHH
ALPEVAWLAEPARDRAVG
HHHHHHHHCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]