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The map label for this gene is dgdR [H]

Identifier: 146343501

GI number: 146343501

Start: 6991759

End: 6992625

Strand: Direct

Name: dgdR [H]

Synonym: BRADO6733

Alternate gene names: 146343501

Gene position: 6991759-6992625 (Clockwise)

Preceding gene: 146343499

Following gene: 146343506

Centisome position: 93.77

GC content: 70.01

Gene sequence:

>867_bases
ATGCTCGATCTGGAGCTTTTGCGCAGCTTCGTGTCCGTGGTCGAGGCCGGCGGCTTCACCCGGGCCGGCGAGCGCGTCCA
CCGCACGCAATCGACCGTCAGCCAGCAGATCCGCCGGCTCGAGGAGGATCTCGGCCAGACGCTGCTCAACCGCGACGGCC
GCGAGGTGACGCCGACCGAGGCCGGCGAGCGGCTGCTGTCCTACGCCCGCCGCCTGCTGACCTTGGCCGAGGAGGCCCGC
GACGTCGTCGCGCGTCCCGGGCCGGCCGGCGCGGTGAAGCTCGGCATCCCCGAGGATTTCGCTGCCTACCGGCTGGCAAA
ACTGCTCGCGGCGTTCTCGCGCGCGCATCCCGATCTCAGGCTCGATGTGCGCGCCGACCAGAGCCTGAACTTGAAGCGCG
ACATCGAGCGCGGCGACCTCGATCTGGCGCTGCTCAAGCGTGGCGCCGATGACACCAGGGCGGCGATCGCGGCATGGCCC
GAGCAGGTCTATTGGGTGGCCAGCAGGAGCCATCCGATCGACCTCGATGCCCGTTCGCTGCCGCTGATCGGCTTTCCCCT
CGGCTGCATCTACCGCACCCGCGCCGTTCACGCGCTCGAAAGTGCGGGGCGCGCCTGGCACATGGCCTATACGTCATCGA
GCCTCGCCGGCATCCAGGCCGCCGTCGCAGCCGGCATGGGGCTGAGCATCCTCTCCGAGATGTCGGTGCAGGCGGATCAC
CGCGTGCTGACCGCGCGCGAGGGCTTTGCGCCGATCGACCGCACGGAGGTAGCGTTGCTCGCGTCGCCGAACGCCAGCCC
GGCGACGTTGCGCCTGGCGAACCGTCTGGCGGAGTTCTGCGACAAGGTGCAGGCGAAGGCAGCGTAA

Upstream 100 bases:

>100_bases
TCGGCGGTCTCCTTCTGCCGCTCGATGTAGGGCTGTTCTTCCTCATTTGGAAATTAAATGATAGACTGAAACTCAGTGGA
ATTTCGAATGGAGGTTCCCG

Downstream 100 bases:

>100_bases
GTCTCGCCATCAGCGCGGTACGTTCCCTCCCCCGCAAGCGGGGGCGAGGGCGCAGCAGAGCGCTGAATTACGATCACGGC
TTCGAAGTCGAGCGGACGAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: 2,2-dialkylglycine decarboxylase repressor [H]

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MLDLELLRSFVSVVEAGGFTRAGERVHRTQSTVSQQIRRLEEDLGQTLLNRDGREVTPTEAGERLLSYARRLLTLAEEAR
DVVARPGPAGAVKLGIPEDFAAYRLAKLLAAFSRAHPDLRLDVRADQSLNLKRDIERGDLDLALLKRGADDTRAAIAAWP
EQVYWVASRSHPIDLDARSLPLIGFPLGCIYRTRAVHALESAGRAWHMAYTSSSLAGIQAAVAAGMGLSILSEMSVQADH
RVLTAREGFAPIDRTEVALLASPNASPATLRLANRLAEFCDKVQAKAA

Sequences:

>Translated_288_residues
MLDLELLRSFVSVVEAGGFTRAGERVHRTQSTVSQQIRRLEEDLGQTLLNRDGREVTPTEAGERLLSYARRLLTLAEEAR
DVVARPGPAGAVKLGIPEDFAAYRLAKLLAAFSRAHPDLRLDVRADQSLNLKRDIERGDLDLALLKRGADDTRAAIAAWP
EQVYWVASRSHPIDLDARSLPLIGFPLGCIYRTRAVHALESAGRAWHMAYTSSSLAGIQAAVAAGMGLSILSEMSVQADH
RVLTAREGFAPIDRTEVALLASPNASPATLRLANRLAEFCDKVQAKAA
>Mature_288_residues
MLDLELLRSFVSVVEAGGFTRAGERVHRTQSTVSQQIRRLEEDLGQTLLNRDGREVTPTEAGERLLSYARRLLTLAEEAR
DVVARPGPAGAVKLGIPEDFAAYRLAKLLAAFSRAHPDLRLDVRADQSLNLKRDIERGDLDLALLKRGADDTRAAIAAWP
EQVYWVASRSHPIDLDARSLPLIGFPLGCIYRTRAVHALESAGRAWHMAYTSSSLAGIQAAVAAGMGLSILSEMSVQADH
RVLTAREGFAPIDRTEVALLASPNASPATLRLANRLAEFCDKVQAKAA

Specific function: Not Known, Does Not Seem To Act On The Proton Translocating NADH Dehydrogenase Genes (Nuoa-N) Which Are Part Of The Lrha Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=270, Percent_Identity=31.8518518518519, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1787806, Length=234, Percent_Identity=29.0598290598291, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1788297, Length=240, Percent_Identity=28.75, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1790208, Length=145, Percent_Identity=35.8620689655172, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1790399, Length=251, Percent_Identity=27.4900398406374, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI157672245, Length=170, Percent_Identity=28.8235294117647, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788887, Length=149, Percent_Identity=34.8993288590604, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787879, Length=151, Percent_Identity=33.112582781457, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI48994962, Length=146, Percent_Identity=32.8767123287671, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87082132, Length=246, Percent_Identity=23.5772357723577, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787589, Length=128, Percent_Identity=37.5, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1786713, Length=77, Percent_Identity=48.0519480519481, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1786401, Length=162, Percent_Identity=33.9506172839506, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788748, Length=144, Percent_Identity=30.5555555555556, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI2367136, Length=153, Percent_Identity=32.0261437908497, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787530, Length=250, Percent_Identity=22.4, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI145693105, Length=243, Percent_Identity=24.2798353909465, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789440, Length=139, Percent_Identity=30.2158273381295, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787128, Length=217, Percent_Identity=25.8064516129032, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1787601, Length=187, Percent_Identity=25.668449197861, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1789173, Length=143, Percent_Identity=32.8671328671329, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31353; Mature: 31353

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDLELLRSFVSVVEAGGFTRAGERVHRTQSTVSQQIRRLEEDLGQTLLNRDGREVTPTE
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
AGERLLSYARRLLTLAEEARDVVARPGPAGAVKLGIPEDFAAYRLAKLLAAFSRAHPDLR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCEE
LDVRADQSLNLKRDIERGDLDLALLKRGADDTRAAIAAWPEQVYWVASRSHPIDLDARSL
EEECCCCCCCHHHHCCCCCCHHHHHHCCCCHHHHHHHHCCHHEEEEECCCCCCCCCCCCC
PLIGFPLGCIYRTRAVHALESAGRAWHMAYTSSSLAGIQAAVAAGMGLSILSEMSVQADH
CEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHH
RVLTAREGFAPIDRTEVALLASPNASPATLRLANRLAEFCDKVQAKAA
HEEECCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLDLELLRSFVSVVEAGGFTRAGERVHRTQSTVSQQIRRLEEDLGQTLLNRDGREVTPTE
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
AGERLLSYARRLLTLAEEARDVVARPGPAGAVKLGIPEDFAAYRLAKLLAAFSRAHPDLR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCEE
LDVRADQSLNLKRDIERGDLDLALLKRGADDTRAAIAAWPEQVYWVASRSHPIDLDARSL
EEECCCCCCCHHHHCCCCCCHHHHHHCCCCHHHHHHHHCCHHEEEEECCCCCCCCCCCCC
PLIGFPLGCIYRTRAVHALESAGRAWHMAYTSSSLAGIQAAVAAGMGLSILSEMSVQADH
CEECCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHH
RVLTAREGFAPIDRTEVALLASPNASPATLRLANRLAEFCDKVQAKAA
HEEECCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2180928 [H]