| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is cya3 [H]
Identifier: 146343300
GI number: 146343300
Start: 6774435
End: 6776012
Strand: Direct
Name: cya3 [H]
Synonym: BRADO6523
Alternate gene names: 146343300
Gene position: 6774435-6776012 (Clockwise)
Preceding gene: 146343298
Following gene: 146343301
Centisome position: 90.85
GC content: 69.84
Gene sequence:
>1578_bases GTGAGATTGGTCGTGCGGCAGCGATGGGCGGATGTGGTGTATCGTTTCGACGATTTCGTGCTCGATCCCGATCGCCGCGA GCTGCGCCGTGGCGGCGATCCGGTCGCGTTGGAACCGCAGGTCTTCGACCTCATCGCGTTCCTGATCAAAGCGCGCGACC ACGTCGTCAGCCGCGACGAGATCCTGGATGCGGTGTGGGGCGGCCGCATCGTCTCGGAGGCCACCCTGGCGAGCCGCATC AGCGCGGCGCGCAGCGCGATCGGCGACAATGGCGAGGCGCAACGCCTGATCCGCACCTTCCCGCGCAAGGGCGTCCGTTT CATCGCCGAAGTTCGCGAGCAGGCCGCCGTCATGGCGGCGCCTGTCATGACCACGCCACGTCTCGACGGCCCGGCCATCG CCGTGCTTCCGTTCACCAACATGAGCGGAGATCCGGCGCAGGACTACTTCGCCGACGGCATGGTCGAGGATATCATCACG GCGCTCTCCCGCTGCAGCGGCCTCGCGGTGATCGCGCGCAACTCGTCATTCACCTACAAGGGCCGCGCCGTGGACATCCG CGAGGTCGGACGCGAGCTCGGCGTCGGCTATGTGCTCGAAGGCAGCGTGCGCCGCGTGGGCGAGCGGCTGCGCATCAACG GCCAGCTGATCGACGCCGGCTCAGGCGCGCATCTCTGGGCCGACCGGTTCGACGGCGATGTGAGCGATCTGTTCGCGTTG CAGGACCGCATCACCGAGAGTGTGGTGGCGGCGATCGAGCCGACGCTCGAGCTCGCCGAGAGCGCACGGCGCCGCGCGGC GCCGCAGCCGCGTCCCGACGCCTATGATCTGCTGCTGCGCGCCGCCAGCCTGCGCGACGCCTTCACGCCCGAGAGCCTGA AGGCCGCGATCGCCTGCCTGGACCACGCGCTCGCGATCGATGCTGACTATGCGCCGGCGATGGCGGCGCGCGCCTATTGT CAGGCACTCCGGCATTTCCAGAGGTGGAGCGAGCCGGACGAGGACTATCGCGCTGACGCCGTCGCGCTGGCCTGGCGAGC GACGGAGCGCGCGCCGGGCGATGCGCAGGTGCTGTGGATGGCGGCGTTCGCGATCTGGAACATGGCCGATGAGAGCGCGC CTGCGCGCGAGCTGTTCAAGCGCTCGCTCGCCATCAATGCGAACTCGGCAATGGCGCTCACCATGAGCGGCTGGATCGCC GCGATGGCGGGACAGCCGGCCGAAGGCCGCGCGATGATCGAACGTGCGCTGCGGCTGAATCCGCGCGATCCGCGCGGCTG GTTCGCAGCCGGCGCGATGGCGATCTGCGCGCTTGCGGGGGATGATCTCGGCGGCGCCATCCGCTGGGCCGAGACGGCGC TCGGCCAGAACCGCCGCTTCGCCGTTGCGCTGCGCGTGCTGATCGTGGCCCTGGTCAGAGCAGGTGACCTCGCCCGGGCC ACCGGCGTCGCGCGCCAACTGTTGATCGTGGAGCCCGACCTCACCGTTTCGGGCTTCCTGGCGCGGATCCCGTTCCCGGT GCAGACCATGGCCACAACCTATGCGGAAGCCCTGCGCGCGGCGGGCGTCCCTGCCTGA
Upstream 100 bases:
>100_bases ACTGATGGGCCCTTGTGCGCGATGCCGGCGCGACGCGCTTGGAGGCGAGCTTGATTTTTGCTTGAGGCGAGCTTGATTTT GCATCGGAGCTGACGCGAAG
Downstream 100 bases:
>100_bases TCCCGCGGCGTGCAGCGGAACCGGCCGCAGCTGTCAATTCAGCCATTTTCAGCAGATCGAGACACTTGGCGAAACGACAT TCACACTACCTTAGGTTCCA
Product: transcriptional regulator
Products: NA
Alternate protein names: ATP pyrophosphate-lyase 3; Adenylyl cyclase 3 [H]
Number of amino acids: Translated: 525; Mature: 525
Protein sequence:
>525_residues MRLVVRQRWADVVYRFDDFVLDPDRRELRRGGDPVALEPQVFDLIAFLIKARDHVVSRDEILDAVWGGRIVSEATLASRI SAARSAIGDNGEAQRLIRTFPRKGVRFIAEVREQAAVMAAPVMTTPRLDGPAIAVLPFTNMSGDPAQDYFADGMVEDIIT ALSRCSGLAVIARNSSFTYKGRAVDIREVGRELGVGYVLEGSVRRVGERLRINGQLIDAGSGAHLWADRFDGDVSDLFAL QDRITESVVAAIEPTLELAESARRRAAPQPRPDAYDLLLRAASLRDAFTPESLKAAIACLDHALAIDADYAPAMAARAYC QALRHFQRWSEPDEDYRADAVALAWRATERAPGDAQVLWMAAFAIWNMADESAPARELFKRSLAINANSAMALTMSGWIA AMAGQPAEGRAMIERALRLNPRDPRGWFAAGAMAICALAGDDLGGAIRWAETALGQNRRFAVALRVLIVALVRAGDLARA TGVARQLLIVEPDLTVSGFLARIPFPVQTMATTYAEALRAAGVPA
Sequences:
>Translated_525_residues MRLVVRQRWADVVYRFDDFVLDPDRRELRRGGDPVALEPQVFDLIAFLIKARDHVVSRDEILDAVWGGRIVSEATLASRI SAARSAIGDNGEAQRLIRTFPRKGVRFIAEVREQAAVMAAPVMTTPRLDGPAIAVLPFTNMSGDPAQDYFADGMVEDIIT ALSRCSGLAVIARNSSFTYKGRAVDIREVGRELGVGYVLEGSVRRVGERLRINGQLIDAGSGAHLWADRFDGDVSDLFAL QDRITESVVAAIEPTLELAESARRRAAPQPRPDAYDLLLRAASLRDAFTPESLKAAIACLDHALAIDADYAPAMAARAYC QALRHFQRWSEPDEDYRADAVALAWRATERAPGDAQVLWMAAFAIWNMADESAPARELFKRSLAINANSAMALTMSGWIA AMAGQPAEGRAMIERALRLNPRDPRGWFAAGAMAICALAGDDLGGAIRWAETALGQNRRFAVALRVLIVALVRAGDLARA TGVARQLLIVEPDLTVSGFLARIPFPVQTMATTYAEALRAAGVPA >Mature_525_residues MRLVVRQRWADVVYRFDDFVLDPDRRELRRGGDPVALEPQVFDLIAFLIKARDHVVSRDEILDAVWGGRIVSEATLASRI SAARSAIGDNGEAQRLIRTFPRKGVRFIAEVREQAAVMAAPVMTTPRLDGPAIAVLPFTNMSGDPAQDYFADGMVEDIIT ALSRCSGLAVIARNSSFTYKGRAVDIREVGRELGVGYVLEGSVRRVGERLRINGQLIDAGSGAHLWADRFDGDVSDLFAL QDRITESVVAAIEPTLELAESARRRAAPQPRPDAYDLLLRAASLRDAFTPESLKAAIACLDHALAIDADYAPAMAARAYC QALRHFQRWSEPDEDYRADAVALAWRATERAPGDAQVLWMAAFAIWNMADESAPARELFKRSLAINANSAMALTMSGWIA AMAGQPAEGRAMIERALRLNPRDPRGWFAAGAMAICALAGDDLGGAIRWAETALGQNRRFAVALRVLIVALVRAGDLARA TGVARQLLIVEPDLTVSGFLARIPFPVQTMATTYAEALRAAGVPA
Specific function: Required For Pcad Induction, A Promoter Upstream Of Cadb That Is Responsible For The Ph-Regulated Expression Of Cada. [C]
COG id: COG5616
COG function: function code S; Predicted integral membrane protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 5 TPR repeats [H]
Homologues:
Organism=Escherichia coli, GI1790576, Length=100, Percent_Identity=32, Blast_Score=66, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001054 - InterPro: IPR001440 - InterPro: IPR013026 - InterPro: IPR011990 - InterPro: IPR019734 [H]
Pfam domain/function: PF00211 Guanylate_cyc; PF00515 TPR_1 [H]
EC number: =4.6.1.1 [H]
Molecular weight: Translated: 57118; Mature: 57118
Theoretical pI: Translated: 6.22; Mature: 6.22
Prosite motif: PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLVVRQRWADVVYRFDDFVLDPDRRELRRGGDPVALEPQVFDLIAFLIKARDHVVSRDE CCCHHHHHHHHHHHHHHHHEECCCHHHHHCCCCCCEECHHHHHHHHHHHHHHHHHCCHHH ILDAVWGGRIVSEATLASRISAARSAIGDNGEAQRLIRTFPRKGVRFIAEVREQAAVMAA HHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC PVMTTPRLDGPAIAVLPFTNMSGDPAQDYFADGMVEDIITALSRCSGLAVIARNSSFTYK CCCCCCCCCCCEEEEEEECCCCCCCHHHHHHCCHHHHHHHHHHHCCCEEEEEECCCEEEC GRAVDIREVGRELGVGYVLEGSVRRVGERLRINGQLIDAGSGAHLWADRFDGDVSDLFAL CCEECHHHHHHHHCCCEEECCHHHHHHHHHEECCEEEECCCCCEEEHHHCCCCHHHHHHH QDRITESVVAAIEPTLELAESARRRAAPQPRPDAYDLLLRAASLRDAFTPESLKAAIACL HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH DHALAIDADYAPAMAARAYCQALRHFQRWSEPDEDYRADAVALAWRATERAPGDAQVLWM HHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHEEEHHCCCCCCCHHHHHH AAFAIWNMADESAPARELFKRSLAINANSAMALTMSGWIAAMAGQPAEGRAMIERALRLN HHHHHHHCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCCCCHHHHHHHHHHCC PRDPRGWFAAGAMAICALAGDDLGGAIRWAETALGQNRRFAVALRVLIVALVRAGDLARA CCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHH TGVARQLLIVEPDLTVSGFLARIPFPVQTMATTYAEALRAAGVPA HHHHHEEEEECCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MRLVVRQRWADVVYRFDDFVLDPDRRELRRGGDPVALEPQVFDLIAFLIKARDHVVSRDE CCCHHHHHHHHHHHHHHHHEECCCHHHHHCCCCCCEECHHHHHHHHHHHHHHHHHCCHHH ILDAVWGGRIVSEATLASRISAARSAIGDNGEAQRLIRTFPRKGVRFIAEVREQAAVMAA HHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC PVMTTPRLDGPAIAVLPFTNMSGDPAQDYFADGMVEDIITALSRCSGLAVIARNSSFTYK CCCCCCCCCCCEEEEEEECCCCCCCHHHHHHCCHHHHHHHHHHHCCCEEEEEECCCEEEC GRAVDIREVGRELGVGYVLEGSVRRVGERLRINGQLIDAGSGAHLWADRFDGDVSDLFAL CCEECHHHHHHHHCCCEEECCHHHHHHHHHEECCEEEECCCCCEEEHHHCCCCHHHHHHH QDRITESVVAAIEPTLELAESARRRAAPQPRPDAYDLLLRAASLRDAFTPESLKAAIACL HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH DHALAIDADYAPAMAARAYCQALRHFQRWSEPDEDYRADAVALAWRATERAPGDAQVLWM HHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHEEEHHCCCCCCCHHHHHH AAFAIWNMADESAPARELFKRSLAINANSAMALTMSGWIAAMAGQPAEGRAMIERALRLN HHHHHHHCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCCCCHHHHHHHHHHCC PRDPRGWFAAGAMAICALAGDDLGGAIRWAETALGQNRRFAVALRVLIVALVRAGDLARA CCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHH TGVARQLLIVEPDLTVSGFLARIPFPVQTMATTYAEALRAAGVPA HHHHHEEEEECCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10485295; 11481432 [H]