Click here to switch to the map view.

The map label for this gene is rtcB [C]

Identifier: 146343292

GI number: 146343292

Start: 6763682

End: 6764821

Strand: Direct

Name: rtcB [C]

Synonym: BRADO6514

Alternate gene names: 146343292

Gene position: 6763682-6764821 (Clockwise)

Preceding gene: 146343291

Following gene: 146343293

Centisome position: 90.71

GC content: 69.74

Gene sequence:

>1140_bases
ATGGGCAATTCCCATCGCGTGGATGGCCGTGCGCCGGTCCACGGCTTCTACTCGTCCAGCTCCTGGATCGAGGGCGCCGC
CGTGCGGCAGCTCGAAACGGTGGCGGACATCGACGGCGTACGCGCGGTCGCCGGGCTGCCGGATCTGCATCCCGGCAAGT
TCGGACCTGTCGGCTGCGCCATCCTCGCCGATCACATCCACCCGGCCTTTGTCGGCGCCGACGCCGGCTGCGGCATGGCG
CTGTATCAGCTCGATCTCGCCGCGCGGCGCATCCGCGTCGACAAGGCGGCCGACCGGCTGCGCGACATCGCCAAGCCCTA
TGACGGCGATATCGCAAGCGAGCTTGCCGCGCATGAGTTGGCGTCGTCCGACTTCGATGCCTCGCTCGGCACGATCGGCG
GCGGCAATCATTTCTGCGAGCTGCAGGCCGTGGAGGAGGTGTTCGATGCGACCTGCGGCATCGATCGCGATCGCGCTCAT
CTGCTGGTGCATTCGGGCTCGCGCGGCCTCGGCCACGCGCTGCTCGAACGGCATGTCGCGGATGGATTGAAGCCGCTCGC
ACCTGACAGCGCTGACGGCCAGGCCTATCTCGCAGCGCATGACCATGCGCTGCGCTGGGCACGGCTGAATCGCGACGTGA
TCGCGCGGCAGGCCGCAGCAGCGTTGCGCTGCGAGGCCGATCCCGTGTGCGAATGCTCGCATAATTGCGTGGTCCATCGC
GGCGAGGGCGTGCTGCACCGGAAGGGCGCGGCGCCGTCCGACCAGGGCCTCGTCGTCGTGCCGGGCTCGCGCGGCGCGCT
GTCCTATCTGGTCGCGCCGCTCGCCACGGCGCCGAAGGAGGCGCTGTGGTCGATTGCGCATGGCGCGGGCCGCAAGTTCG
ACCGGTCGTCGATGATCGGCCGGGTCGGCGCCACCAAATCGGATCGCGAGCGGCTGTCGCGCAATCCGTTCGGCGGCCGC
GTGATCTGCGAGGACCGCGCGCTGCTCGCCGAGGAGGCGCCAGAGGCCTACAAGCCGATCTCGGGCGTGATCGCCGATCT
TGAGGCGTTCGGGCTCGCGCGCGTCGTCGCCAGCTTCCGGCCGCTGGTGACGGTGAAGAAGATCGCCACCGAGCGGCGGC
CGAAGGAGGAGCGCCGATGA

Upstream 100 bases:

>100_bases
CCGGGCCTGATCCTCGCGTGAGGCGGGGTGTGGCCGGGCATGCGCGCATCCGCGCGCTGTTAGTCCCTGACATCTCTCCT
GATCTCTCCAAGGTACCCAC

Downstream 100 bases:

>100_bases
GACGGCTGCTCCTCACCTCGGGACGCGGTCCGGCGGAATGCCGGATCGCGGTCGCACATGCGCTCGCGCGTCTCGCGGAC
GAAGCCGCGGCGGCGGACTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 378

Protein sequence:

>379_residues
MGNSHRVDGRAPVHGFYSSSSWIEGAAVRQLETVADIDGVRAVAGLPDLHPGKFGPVGCAILADHIHPAFVGADAGCGMA
LYQLDLAARRIRVDKAADRLRDIAKPYDGDIASELAAHELASSDFDASLGTIGGGNHFCELQAVEEVFDATCGIDRDRAH
LLVHSGSRGLGHALLERHVADGLKPLAPDSADGQAYLAAHDHALRWARLNRDVIARQAAAALRCEADPVCECSHNCVVHR
GEGVLHRKGAAPSDQGLVVVPGSRGALSYLVAPLATAPKEALWSIAHGAGRKFDRSSMIGRVGATKSDRERLSRNPFGGR
VICEDRALLAEEAPEAYKPISGVIADLEAFGLARVVASFRPLVTVKKIATERRPKEERR

Sequences:

>Translated_379_residues
MGNSHRVDGRAPVHGFYSSSSWIEGAAVRQLETVADIDGVRAVAGLPDLHPGKFGPVGCAILADHIHPAFVGADAGCGMA
LYQLDLAARRIRVDKAADRLRDIAKPYDGDIASELAAHELASSDFDASLGTIGGGNHFCELQAVEEVFDATCGIDRDRAH
LLVHSGSRGLGHALLERHVADGLKPLAPDSADGQAYLAAHDHALRWARLNRDVIARQAAAALRCEADPVCECSHNCVVHR
GEGVLHRKGAAPSDQGLVVVPGSRGALSYLVAPLATAPKEALWSIAHGAGRKFDRSSMIGRVGATKSDRERLSRNPFGGR
VICEDRALLAEEAPEAYKPISGVIADLEAFGLARVVASFRPLVTVKKIATERRPKEERR
>Mature_378_residues
GNSHRVDGRAPVHGFYSSSSWIEGAAVRQLETVADIDGVRAVAGLPDLHPGKFGPVGCAILADHIHPAFVGADAGCGMAL
YQLDLAARRIRVDKAADRLRDIAKPYDGDIASELAAHELASSDFDASLGTIGGGNHFCELQAVEEVFDATCGIDRDRAHL
LVHSGSRGLGHALLERHVADGLKPLAPDSADGQAYLAAHDHALRWARLNRDVIARQAAAALRCEADPVCECSHNCVVHRG
EGVLHRKGAAPSDQGLVVVPGSRGALSYLVAPLATAPKEALWSIAHGAGRKFDRSSMIGRVGATKSDRERLSRNPFGGRV
ICEDRALLAEEAPEAYKPISGVIADLEAFGLARVVASFRPLVTVKKIATERRPKEERR

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DOD-type homing endonuclease domain [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=291, Percent_Identity=28.5223367697594, Blast_Score=84, Evalue=3e-16,
Organism=Escherichia coli, GI2367224, Length=420, Percent_Identity=27.8571428571429, Blast_Score=100, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17506665, Length=290, Percent_Identity=27.5862068965517, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24585217, Length=290, Percent_Identity=28.6206896551724, Blast_Score=87, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003586
- InterPro:   IPR003587
- InterPro:   IPR006142
- InterPro:   IPR004042
- InterPro:   IPR006141
- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 40368; Mature: 40237

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNSHRVDGRAPVHGFYSSSSWIEGAAVRQLETVADIDGVRAVAGLPDLHPGKFGPVGCA
CCCCCCCCCCCCCCEECCCCCHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
ILADHIHPAFVGADAGCGMALYQLDLAARRIRVDKAADRLRDIAKPYDGDIASELAAHEL
HHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
ASSDFDASLGTIGGGNHFCELQAVEEVFDATCGIDRDRAHLLVHSGSRGLGHALLERHVA
HCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHH
DGLKPLAPDSADGQAYLAAHDHALRWARLNRDVIARQAAAALRCEADPVCECSHNCVVHR
CCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEC
GEGVLHRKGAAPSDQGLVVVPGSRGALSYLVAPLATAPKEALWSIAHGAGRKFDRSSMIG
CCCCEEECCCCCCCCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHH
RVGATKSDRERLSRNPFGGRVICEDRALLAEEAPEAYKPISGVIADLEAFGLARVVASFR
HCCCCCHHHHHHHCCCCCCEEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
PLVTVKKIATERRPKEERR
HHHHHHHHHHHCCCHHHCC
>Mature Secondary Structure 
GNSHRVDGRAPVHGFYSSSSWIEGAAVRQLETVADIDGVRAVAGLPDLHPGKFGPVGCA
CCCCCCCCCCCCCEECCCCCHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
ILADHIHPAFVGADAGCGMALYQLDLAARRIRVDKAADRLRDIAKPYDGDIASELAAHEL
HHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
ASSDFDASLGTIGGGNHFCELQAVEEVFDATCGIDRDRAHLLVHSGSRGLGHALLERHVA
HCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHH
DGLKPLAPDSADGQAYLAAHDHALRWARLNRDVIARQAAAALRCEADPVCECSHNCVVHR
CCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEC
GEGVLHRKGAAPSDQGLVVVPGSRGALSYLVAPLATAPKEALWSIAHGAGRKFDRSSMIG
CCCCEEECCCCCCCCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHH
RVGATKSDRERLSRNPFGGRVICEDRALLAEEAPEAYKPISGVIADLEAFGLARVVASFR
HCCCCCHHHHHHHCCCCCCEEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
PLVTVKKIATERRPKEERR
HHHHHHHHHHHCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]