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The map label for this gene is exbD [H]

Identifier: 146343117

GI number: 146343117

Start: 6563290

End: 6563739

Strand: Reverse

Name: exbD [H]

Synonym: BRADO6314

Alternate gene names: 146343117

Gene position: 6563739-6563290 (Counterclockwise)

Preceding gene: 146343118

Following gene: 146343116

Centisome position: 88.03

GC content: 63.56

Gene sequence:

>450_bases
ATGGCCGTCTCCCTCTCGGAAGCCGATGGTGACGATGATCCCGGCGAATCCGCCGACATCAACGTCACGCCGTTCATCGA
CGTGATCCTGGTGCTGCTGATCATCTTCATGGTCGCAGCGCCGCTGTCGACGGTCGACGTGCCGGTCGATCTGCCGACGT
CGACCGCCACGCCGCAGAAGAAACCGGACAAGCCGATCTATGTCAGCATCAAGCCGGACCTCACGCTCTATGTCGGCGAG
GAGCAGGTCAAGCGGGCGAATCTGGTCAGCACGCTCGAGCACATTCCGGAGGCCGCCAAGGACAAGTTCGTGTTCCTCCG
CGCCGACCGCGGCGTGGCCTATGGCGAACTGATGGACGTGATGGAGCTGCTGCGCACCGGAGGCTATCCCAAGATCAAGC
TCGTCACGGTCGAGGGCGTCTCGCAGTCCGCCGCACAGGCGGCCCATTGA

Upstream 100 bases:

>100_bases
CGATCGCGGCCAGAGCCACCACACGCCGCAGGGCCGCGGCTTCGAGCCGATCCACGTCCACTCGTCGCCGCCGATGGCGC
TGGCCGCGGAGTAGAGCGAC

Downstream 100 bases:

>100_bases
AACCAGTGCAACGACGGAAGTGAAGAATGGTCGAACACAAGTATCAAGGAGCGACGCGCCGCTTGTGGATCTCCGCCGCC
ATCGGGGCGCTGATGCTGCA

Product: biopolymer transport exbD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 148

Protein sequence:

>149_residues
MAVSLSEADGDDDPGESADINVTPFIDVILVLLIIFMVAAPLSTVDVPVDLPTSTATPQKKPDKPIYVSIKPDLTLYVGE
EQVKRANLVSTLEHIPEAAKDKFVFLRADRGVAYGELMDVMELLRTGGYPKIKLVTVEGVSQSAAQAAH

Sequences:

>Translated_149_residues
MAVSLSEADGDDDPGESADINVTPFIDVILVLLIIFMVAAPLSTVDVPVDLPTSTATPQKKPDKPIYVSIKPDLTLYVGE
EQVKRANLVSTLEHIPEAAKDKFVFLRADRGVAYGELMDVMELLRTGGYPKIKLVTVEGVSQSAAQAAH
>Mature_148_residues
AVSLSEADGDDDPGESADINVTPFIDVILVLLIIFMVAAPLSTVDVPVDLPTSTATPQKKPDKPIYVSIKPDLTLYVGEE
QVKRANLVSTLEHIPEAAKDKFVFLRADRGVAYGELMDVMELLRTGGYPKIKLVTVEGVSQSAAQAAH

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=138, Percent_Identity=53.6231884057971, Blast_Score=144, Evalue=3e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014170 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 16021; Mature: 15889

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVSLSEADGDDDPGESADINVTPFIDVILVLLIIFMVAAPLSTVDVPVDLPTSTATPQK
CCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
KPDKPIYVSIKPDLTLYVGEEQVKRANLVSTLEHIPEAAKDKFVFLRADRGVAYGELMDV
CCCCCEEEEECCCEEEEECHHHHHHHHHHHHHHHCCHHHCCCEEEEECCCCCCHHHHHHH
MELLRTGGYPKIKLVTVEGVSQSAAQAAH
HHHHHCCCCCEEEEEEECCCCHHHHHCCC
>Mature Secondary Structure 
AVSLSEADGDDDPGESADINVTPFIDVILVLLIIFMVAAPLSTVDVPVDLPTSTATPQK
CEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
KPDKPIYVSIKPDLTLYVGEEQVKRANLVSTLEHIPEAAKDKFVFLRADRGVAYGELMDV
CCCCCEEEEECCCEEEEECHHHHHHHHHHHHHHHCCHHHCCCEEEEECCCCCCHHHHHHH
MELLRTGGYPKIKLVTVEGVSQSAAQAAH
HHHHHCCCCCEEEEEEECCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]