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The map label for this gene is sodB [H]

Identifier: 146343080

GI number: 146343080

Start: 6517095

End: 6517694

Strand: Reverse

Name: sodB [H]

Synonym: BRADO6273

Alternate gene names: 146343080

Gene position: 6517694-6517095 (Counterclockwise)

Preceding gene: 146343083

Following gene: 146343079

Centisome position: 87.41

GC content: 59.33

Gene sequence:

>600_bases
ATGACCTTTACGCTTCCCCCCCTGCCTTACGCCTATGACGCCCTCGGCGCCTACATGTCCAAGGAGACGCTGGAGTATCA
TCACGACAAGCATCACCAGGCCTATGTGACCAACGGCAACAATCTGATCAAGGGGACCGAATTCGAAGGCAAGTCCCTCG
AGGAGATCGTCAAGGGCTCGTTCGGCAAGAACGCACCGATCTTCAACAATGCCGGCCAGCACTACAATCACATCCACTTC
TGGTCGTGGATGAAGCCGAATGGCGGCGGCACCAAGCTGCCGGGCGCGTTGGAGAAGAAGATCAACGAGGACCTCGGCGG
CTACGAGAAGTTCAAGACGGACTTCATCGCCGCCGGCGTCGGCCAGTTCGGCTCGGGCTGGGCCTGGCTCTCGGTCAAGA
ACGGCAAGCTGGAGATCTCCAAGACCGCCAATGGCGAGAGCCCGCTGGTGCATGGCGCGACCCCGATCCTCGGCGTCGAC
GTCTGGGAGCACTCCTATTACATCGACTACCGCAACCGCCGTCCCGACTACCTGAAGGCCTTCGTCGAAAACCTCATCAA
CTGGGAATACGTCGAAGAGCTGTACAGCAAGGCTGTCTGA

Upstream 100 bases:

>100_bases
CGGCTCGCTTTTTCCAGAATCACAGTGTTTAGGAGTTCGGAACCTTCTATAAGGAGGTCCCGTTAAATCCCGTCTTCCCA
CAAGTTGCGGAACCGACCCC

Downstream 100 bases:

>100_bases
TCCGGTGTGATCGTCAGGGAAGGGCGGCGGGCTCGGGCTCGCCGCCCTTTTTCTTTGTCGCCCCTTTTCTCTGCCGCGCC
TGTTCTCTGACGCCGATATG

Product: superoxide dismutase, iron/manganese cofactor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 198

Protein sequence:

>199_residues
MTFTLPPLPYAYDALGAYMSKETLEYHHDKHHQAYVTNGNNLIKGTEFEGKSLEEIVKGSFGKNAPIFNNAGQHYNHIHF
WSWMKPNGGGTKLPGALEKKINEDLGGYEKFKTDFIAAGVGQFGSGWAWLSVKNGKLEISKTANGESPLVHGATPILGVD
VWEHSYYIDYRNRRPDYLKAFVENLINWEYVEELYSKAV

Sequences:

>Translated_199_residues
MTFTLPPLPYAYDALGAYMSKETLEYHHDKHHQAYVTNGNNLIKGTEFEGKSLEEIVKGSFGKNAPIFNNAGQHYNHIHF
WSWMKPNGGGTKLPGALEKKINEDLGGYEKFKTDFIAAGVGQFGSGWAWLSVKNGKLEISKTANGESPLVHGATPILGVD
VWEHSYYIDYRNRRPDYLKAFVENLINWEYVEELYSKAV
>Mature_198_residues
TFTLPPLPYAYDALGAYMSKETLEYHHDKHHQAYVTNGNNLIKGTEFEGKSLEEIVKGSFGKNAPIFNNAGQHYNHIHFW
SWMKPNGGGTKLPGALEKKINEDLGGYEKFKTDFIAAGVGQFGSGWAWLSVKNGKLEISKTANGESPLVHGATPILGVDV
WEHSYYIDYRNRRPDYLKAFVENLINWEYVEELYSKAV

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=196, Percent_Identity=42.3469387755102, Blast_Score=146, Evalue=1e-35,
Organism=Homo sapiens, GI67782305, Length=196, Percent_Identity=42.3469387755102, Blast_Score=146, Evalue=1e-35,
Organism=Homo sapiens, GI67782309, Length=196, Percent_Identity=37.7551020408163, Blast_Score=115, Evalue=3e-26,
Organism=Escherichia coli, GI1787946, Length=195, Percent_Identity=54.8717948717949, Blast_Score=206, Evalue=8e-55,
Organism=Escherichia coli, GI1790342, Length=200, Percent_Identity=46, Blast_Score=174, Evalue=5e-45,
Organism=Caenorhabditis elegans, GI17506561, Length=203, Percent_Identity=36.4532019704434, Blast_Score=119, Evalue=9e-28,
Organism=Caenorhabditis elegans, GI17569479, Length=201, Percent_Identity=34.8258706467662, Blast_Score=114, Evalue=5e-26,
Organism=Saccharomyces cerevisiae, GI6321796, Length=202, Percent_Identity=36.6336633663366, Blast_Score=100, Evalue=1e-22,
Organism=Drosophila melanogaster, GI17136812, Length=200, Percent_Identity=38.5, Blast_Score=125, Evalue=2e-29,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22491; Mature: 22360

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFTLPPLPYAYDALGAYMSKETLEYHHDKHHQAYVTNGNNLIKGTEFEGKSLEEIVKGS
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEECCCCCCCCHHHHHCCC
FGKNAPIFNNAGQHYNHIHFWSWMKPNGGGTKLPGALEKKINEDLGGYEKFKTDFIAAGV
CCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCC
GQFGSGWAWLSVKNGKLEISKTANGESPLVHGATPILGVDVWEHSYYIDYRNRRPDYLKA
CCCCCCEEEEEEECCEEEEEECCCCCCCEEECCCCEEEEEEECCEEEEECCCCCHHHHHH
FVENLINWEYVEELYSKAV
HHHHHCCHHHHHHHHHHCC
>Mature Secondary Structure 
TFTLPPLPYAYDALGAYMSKETLEYHHDKHHQAYVTNGNNLIKGTEFEGKSLEEIVKGS
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEECCCCCCCCHHHHHCCC
FGKNAPIFNNAGQHYNHIHFWSWMKPNGGGTKLPGALEKKINEDLGGYEKFKTDFIAAGV
CCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCC
GQFGSGWAWLSVKNGKLEISKTANGESPLVHGATPILGVDVWEHSYYIDYRNRRPDYLKA
CCCCCCEEEEEEECCEEEEEECCCCCCCEEECCCCEEEEEEECCEEEEECCCCCHHHHHH
FVENLINWEYVEELYSKAV
HHHHHCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10419947; 11481430 [H]