Click here to switch to the map view.

The map label for this gene is hss [H]

Identifier: 146343072

GI number: 146343072

Start: 6509137

End: 6510561

Strand: Direct

Name: hss [H]

Synonym: BRADO6264

Alternate gene names: 146343072

Gene position: 6509137-6510561 (Clockwise)

Preceding gene: 146343071

Following gene: 146343081

Centisome position: 87.29

GC content: 65.4

Gene sequence:

>1425_bases
ATGAGCTCGCAGATCCACGCCAAAATCACCGGCCCCATCGTCATGATCGGCTTCGGCTCGATCGGCAAGGGCACCCTGCC
TTTGATCGAACGCCATTTCGATTACGACAAGAGCCGCTTCGTTATCATCGATCCCCATGATGACGGCGAGCTCGCGAAGA
AGCACGGCGTGCGCTTCATCCAGCAGGGTGTGACCCGCGACAATTACCGCGACCTGCTGGTGCCGCTGCTCACCGAAGGC
GGCGGCCAGGGTTTCTGCGTCAACCTCTCGGTCGACACCTCCTCGGTCGACATCATGACCTTGTGCCGCGAGATCGGCGC
GCTCTACATCGACACCGTCGTCGAGCCGTGGGCGGGCTTCTACTTCGACAAGCAGATGGGCCCGGAGAAGCGCTCGAACT
ACGCGCTGCGCGAGACGCTGCTCGCCGCGCGCCGCAAGAGCCCGGGCGGCACCACCGCCGTGTCGACCTGCGGCGCCAAC
CCCGGCATGGTGTCCTGGTTCGTCAAGCAGGCGCTGCTCGACATCGCCCGGGACACCAAGACCGCGATCGTCGAGCCGAA
GAGCCGCGAAGGCTGGGCGCAGCTGATGCAGAAGCTCGGCGTCAAGGGCGTGCACATCGCCGAGCGCGACACCCAGCGCT
CCAAGAACCCGAAGCCGATGGACGTGTTCGTCAACACCTGGTCGGTCGAGGGCTTTGTCTCCGAGGGCATGCAGCCGGCC
GAGCTGGGCTGGGGCACGCATGAGACCTGGATGCCGGACAACGGCCGCCGCCACACCGAGGGCTGTGGCGCGGCGATCTA
TCTGCTGCAGCCGGGCGCCAACACCCGCGTCCGCTCGTGGTGCCCGACGCCGGGCGCGCAATACGGCTTCCTGGTGACGC
ACAACGAGTCAATCTCGATCGCCGACTACTACACGGTGCGCGACGGCGACAAGGTCGTCTACCGCCCGACCTGCCACTAC
GCCTATCACCCGGCCAATGACGCGGTGCTGTCGCTGCACGAGATCTTCGGCGCCACCGGCAAGATGCAGGAGAAGTGGCA
CATCCTAGATGAGAACGAGATCGTCGACGGCATCGACGAGCTCGGCGTGCTGCTCTACGGCCACGGCAAGAACGCCTATT
GGTACGGCTCGCAGCTCTCGATCGAGGAAACCCGCCGCATCGCGCCGTACCAGAACGCGACCGGCATGCAGGTGTCCTCC
GCCGTGCTCGCCGGCATGGTCTGGGCGCTGGAAAACCCGAACGCCGGCATCGTCGAAGCCGACGAAATGGACTTCCGCCG
CTGCCTGGAGATCCAGACGCCGTATCTCGGCCCGGTCAAGGGCTACTACACGGATTGGACCCCGCTGAACGACCGGCCCG
GCCTGTTCCCGGAGGACATCGACACGTCAGATCCCTGGCAGTTCCGCAACATCCTGGTGCGGTAA

Upstream 100 bases:

>100_bases
TCGAAGTCACCGCCAAGCGCCGCGGCTCCTAGAGAGTGGCGCAGCGCCTGAGGCATCCATTCCACGAACGCGAAAGCACC
TGTCCGGAGACCATCCCCTC

Downstream 100 bases:

>100_bases
GCCTGAGCTGTCGTCCCGGCGAACTGCGCCGCGCACCAGCGCGGCGCCGACCTGGGACCCCTACTCCGCAGCAGCCATAT
GGCCGCGCTGGAGCGACCAG

Product: homospermidine synthase

Products: NA

Alternate protein names: HSS [H]

Number of amino acids: Translated: 474; Mature: 473

Protein sequence:

>474_residues
MSSQIHAKITGPIVMIGFGSIGKGTLPLIERHFDYDKSRFVIIDPHDDGELAKKHGVRFIQQGVTRDNYRDLLVPLLTEG
GGQGFCVNLSVDTSSVDIMTLCREIGALYIDTVVEPWAGFYFDKQMGPEKRSNYALRETLLAARRKSPGGTTAVSTCGAN
PGMVSWFVKQALLDIARDTKTAIVEPKSREGWAQLMQKLGVKGVHIAERDTQRSKNPKPMDVFVNTWSVEGFVSEGMQPA
ELGWGTHETWMPDNGRRHTEGCGAAIYLLQPGANTRVRSWCPTPGAQYGFLVTHNESISIADYYTVRDGDKVVYRPTCHY
AYHPANDAVLSLHEIFGATGKMQEKWHILDENEIVDGIDELGVLLYGHGKNAYWYGSQLSIEETRRIAPYQNATGMQVSS
AVLAGMVWALENPNAGIVEADEMDFRRCLEIQTPYLGPVKGYYTDWTPLNDRPGLFPEDIDTSDPWQFRNILVR

Sequences:

>Translated_474_residues
MSSQIHAKITGPIVMIGFGSIGKGTLPLIERHFDYDKSRFVIIDPHDDGELAKKHGVRFIQQGVTRDNYRDLLVPLLTEG
GGQGFCVNLSVDTSSVDIMTLCREIGALYIDTVVEPWAGFYFDKQMGPEKRSNYALRETLLAARRKSPGGTTAVSTCGAN
PGMVSWFVKQALLDIARDTKTAIVEPKSREGWAQLMQKLGVKGVHIAERDTQRSKNPKPMDVFVNTWSVEGFVSEGMQPA
ELGWGTHETWMPDNGRRHTEGCGAAIYLLQPGANTRVRSWCPTPGAQYGFLVTHNESISIADYYTVRDGDKVVYRPTCHY
AYHPANDAVLSLHEIFGATGKMQEKWHILDENEIVDGIDELGVLLYGHGKNAYWYGSQLSIEETRRIAPYQNATGMQVSS
AVLAGMVWALENPNAGIVEADEMDFRRCLEIQTPYLGPVKGYYTDWTPLNDRPGLFPEDIDTSDPWQFRNILVR
>Mature_473_residues
SSQIHAKITGPIVMIGFGSIGKGTLPLIERHFDYDKSRFVIIDPHDDGELAKKHGVRFIQQGVTRDNYRDLLVPLLTEGG
GQGFCVNLSVDTSSVDIMTLCREIGALYIDTVVEPWAGFYFDKQMGPEKRSNYALRETLLAARRKSPGGTTAVSTCGANP
GMVSWFVKQALLDIARDTKTAIVEPKSREGWAQLMQKLGVKGVHIAERDTQRSKNPKPMDVFVNTWSVEGFVSEGMQPAE
LGWGTHETWMPDNGRRHTEGCGAAIYLLQPGANTRVRSWCPTPGAQYGFLVTHNESISIADYYTVRDGDKVVYRPTCHYA
YHPANDAVLSLHEIFGATGKMQEKWHILDENEIVDGIDELGVLLYGHGKNAYWYGSQLSIEETRRIAPYQNATGMQVSSA
VLAGMVWALENPNAGIVEADEMDFRRCLEIQTPYLGPVKGYYTDWTPLNDRPGLFPEDIDTSDPWQFRNILVR

Specific function: Involved in the NAD(+)-dependent synthesis of the polyamine homospermidine from putrescine [H]

COG id: COG5310

COG function: function code Q; Homospermidine synthase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023181
- InterPro:   IPR016040
- InterPro:   IPR005097 [H]

Pfam domain/function: PF03435 Saccharop_dh [H]

EC number: =2.5.1.44 [H]

Molecular weight: Translated: 52913; Mature: 52781

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSQIHAKITGPIVMIGFGSIGKGTLPLIERHFDYDKSRFVIIDPHDDGELAKKHGVRFI
CCCCEEEEECCCEEEEEECCCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHH
QQGVTRDNYRDLLVPLLTEGGGQGFCVNLSVDTSSVDIMTLCREIGALYIDTVVEPWAGF
HHCCCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCE
YFDKQMGPEKRSNYALRETLLAARRKSPGGTTAVSTCGANPGMVSWFVKQALLDIARDTK
EECCCCCCCHHCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCC
TAIVEPKSREGWAQLMQKLGVKGVHIAERDTQRSKNPKPMDVFVNTWSVEGFVSEGMQPA
EEEECCCCCHHHHHHHHHHCCCCEEEECCHHHHCCCCCCEEEEEEEEEECHHHHCCCCHH
ELGWGTHETWMPDNGRRHTEGCGAAIYLLQPGANTRVRSWCPTPGAQYGFLVTHNESISI
HCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCCCCEEEEEEECCCEEE
ADYYTVRDGDKVVYRPTCHYAYHPANDAVLSLHEIFGATGKMQEKWHILDENEIVDGIDE
EEEEEEECCCEEEEECCCCEEECCCCHHHHHHHHHHCCCCCCCCCEEECCCCHHHHCHHH
LGVLLYGHGKNAYWYGSQLSIEETRRIAPYQNATGMQVSSAVLAGMVWALENPNAGIVEA
CCEEEEECCCCEEEECCEECHHHHHCCCCCCCCCCCHHHHHHHHHHEEEEECCCCCEEEC
DEMDFRRCLEIQTPYLGPVKGYYTDWTPLNDRPGLFPEDIDTSDPWQFRNILVR
CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC
>Mature Secondary Structure 
SSQIHAKITGPIVMIGFGSIGKGTLPLIERHFDYDKSRFVIIDPHDDGELAKKHGVRFI
CCCEEEEECCCEEEEEECCCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHH
QQGVTRDNYRDLLVPLLTEGGGQGFCVNLSVDTSSVDIMTLCREIGALYIDTVVEPWAGF
HHCCCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCE
YFDKQMGPEKRSNYALRETLLAARRKSPGGTTAVSTCGANPGMVSWFVKQALLDIARDTK
EECCCCCCCHHCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCC
TAIVEPKSREGWAQLMQKLGVKGVHIAERDTQRSKNPKPMDVFVNTWSVEGFVSEGMQPA
EEEECCCCCHHHHHHHHHHCCCCEEEECCHHHHCCCCCCEEEEEEEEEECHHHHCCCCHH
ELGWGTHETWMPDNGRRHTEGCGAAIYLLQPGANTRVRSWCPTPGAQYGFLVTHNESISI
HCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCCCCEEEEEEECCCEEE
ADYYTVRDGDKVVYRPTCHYAYHPANDAVLSLHEIFGATGKMQEKWHILDENEIVDGIDE
EEEEEEECCCEEEEECCCCEEECCCCHHHHHHHHHHCCCCCCCCCEEECCCCHHHHCHHH
LGVLLYGHGKNAYWYGSQLSIEETRRIAPYQNATGMQVSSAVLAGMVWALENPNAGIVEA
CCEEEEECCCCEEEECCEECHHHHHCCCCCCCCCCCHHHHHHHHHHEEEEECCCCCEEEC
DEMDFRRCLEIQTPYLGPVKGYYTDWTPLNDRPGLFPEDIDTSDPWQFRNILVR
CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8841401 [H]