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The map label for this gene is xerD [C]

Identifier: 146343024

GI number: 146343024

Start: 6447449

End: 6448738

Strand: Direct

Name: xerD [C]

Synonym: BRADO6212

Alternate gene names: 146343024

Gene position: 6447449-6448738 (Clockwise)

Preceding gene: 146343023

Following gene: 146343026

Centisome position: 86.47

GC content: 59.38

Gene sequence:

>1290_bases
TTGATTCGCTTCATGCCCCGTCCTCGCAAGCCTTACCTTCACAAGGAAATCAACCGTCACGGCAGGACGGTCTGGTACGT
TCGCAACAAGGACGTCGGCGGCAAACGCACTCGCATTCGCGGCGAGTACGGATCCACAGAATTCAACCGCAACTACGACA
TCGCTCTAGCCGGCATGTTCAATCGGCCACGCCTCGCAATCGATCCCAGCGAGGCCAGGGCGAAGGTCTTTGATGGTAGC
CTCAAATGGCTATGGGAAGAATACAAGGCAAAGGCGCCTGATTGGCGCGAGATGAAGGCGAGCACGCACAAGCAGCGCAA
CAGCCTGATGATTCATGTTCTGGAGGCCAACGGCAATAAAAGAGCAGCCGCCATCCAGAAGCAGCATATCCTGGACGGGC
TTGGGCGTCGCGCTCAGAACCCCTCCGCAGCCCGGCACTTTCTCACCACCATGAGGCGGATGTTCATCTGGGCGGTCGCG
CAAAAGATTCTTGCGGTAGATCCAACCGAAGGGATCAAGACACCCAAGCCGGCGAAAACCGAAGGCTTCGTTACCTGGTC
TGATGCCGACGTTCGGCGTTACTACAAGCGCTGGCCGCTGGGCACACGCGAGCGCGTGATGATCGACGTCTACCTCTTCA
CCGGTTTTCGGCGGGGTGACGCAGCATCGTTCGGCCCTGCCGACGTGACCGAACAGGTGCAAGAGCGGATTGGCCCCGAC
GGAAAACTCGAGCAAATCTCCGTTCCGATCATCACGAAGCGCCTCGAAAAGGGGAGCGAGACCATTGAGGTCACCTTTCC
GATGCTCGATGTCCTGCGCCGGACGTTGGAGGCAGGTCCGGTCGGAACCGAGACCTACATCGCGACCCGGCAGGGCAAGC
CGATGACCAAGGAGAGCCTCGGCAACGTGTTCAAGGAGAAGTGCGTCGCCGCTGGATTGGCAAATCGATCAGCGCACGGC
CTCCGCAAGGCGGCTGCGACGGTCGCCGCGGAAAACGGTGCGACGGAAGCCGAGCTGGACGCGATCTTCGGTTGGACCGA
TCGTCGAATGGCGAGCCATTACACGCGGAACGCCAACCGCAAGAAGTTGGCCTATGGCGGCGTCGCCAAGCTAGAGAGAA
AGATCGGCTCCGAGGACCATAGAGCGAACGTCTATTCCCTCACCGATAAGCTAGGTGCGGGAAATCGAACGAAAAGCTCA
ATGAAATCAGCCGACGTCCGGAAGGATGGTGGGCACGACAGGGATCGAACCTGTGACCCCTACCATGTCAAGGTAGTGCT
CTCCCGCTGA

Upstream 100 bases:

>100_bases
TTAGAATCAAGCCGGACGGCACGATCATCGTCGACCTGGTCAAATACAATGACGAGCAGGATCTCGACGAGACTGTTGAG
CCCGAAGAGCATTTCGTGCT

Downstream 100 bases:

>100_bases
GCTACGTGCCCTAATCCGTCAAGTCCGTTCGGGTGGGCGTCCCTATATCGGCTCCCACGCAGGCAGGCAAGGACGCAAAA
TGCCGAAATTGGGAATAATC

Product: putative phage integrase/recombinase

Products: NA

Alternate protein names: Phage Integrase Family Protein; Phage Integrase; Phage-Related Integrase/Recombinase; Phage Integrase/Recombinase; Integrase/Recombinase; Integrase; Integrase/Recombinase Protein; Phage-Related Integrase; Phage Related Integrase; Tyrosine Recombinase; Site-Specific Recombinase Phage Integrase Family Protein

Number of amino acids: Translated: 429; Mature: 429

Protein sequence:

>429_residues
MIRFMPRPRKPYLHKEINRHGRTVWYVRNKDVGGKRTRIRGEYGSTEFNRNYDIALAGMFNRPRLAIDPSEARAKVFDGS
LKWLWEEYKAKAPDWREMKASTHKQRNSLMIHVLEANGNKRAAAIQKQHILDGLGRRAQNPSAARHFLTTMRRMFIWAVA
QKILAVDPTEGIKTPKPAKTEGFVTWSDADVRRYYKRWPLGTRERVMIDVYLFTGFRRGDAASFGPADVTEQVQERIGPD
GKLEQISVPIITKRLEKGSETIEVTFPMLDVLRRTLEAGPVGTETYIATRQGKPMTKESLGNVFKEKCVAAGLANRSAHG
LRKAAATVAAENGATEAELDAIFGWTDRRMASHYTRNANRKKLAYGGVAKLERKIGSEDHRANVYSLTDKLGAGNRTKSS
MKSADVRKDGGHDRDRTCDPYHVKVVLSR

Sequences:

>Translated_429_residues
MIRFMPRPRKPYLHKEINRHGRTVWYVRNKDVGGKRTRIRGEYGSTEFNRNYDIALAGMFNRPRLAIDPSEARAKVFDGS
LKWLWEEYKAKAPDWREMKASTHKQRNSLMIHVLEANGNKRAAAIQKQHILDGLGRRAQNPSAARHFLTTMRRMFIWAVA
QKILAVDPTEGIKTPKPAKTEGFVTWSDADVRRYYKRWPLGTRERVMIDVYLFTGFRRGDAASFGPADVTEQVQERIGPD
GKLEQISVPIITKRLEKGSETIEVTFPMLDVLRRTLEAGPVGTETYIATRQGKPMTKESLGNVFKEKCVAAGLANRSAHG
LRKAAATVAAENGATEAELDAIFGWTDRRMASHYTRNANRKKLAYGGVAKLERKIGSEDHRANVYSLTDKLGAGNRTKSS
MKSADVRKDGGHDRDRTCDPYHVKVVLSR
>Mature_429_residues
MIRFMPRPRKPYLHKEINRHGRTVWYVRNKDVGGKRTRIRGEYGSTEFNRNYDIALAGMFNRPRLAIDPSEARAKVFDGS
LKWLWEEYKAKAPDWREMKASTHKQRNSLMIHVLEANGNKRAAAIQKQHILDGLGRRAQNPSAARHFLTTMRRMFIWAVA
QKILAVDPTEGIKTPKPAKTEGFVTWSDADVRRYYKRWPLGTRERVMIDVYLFTGFRRGDAASFGPADVTEQVQERIGPD
GKLEQISVPIITKRLEKGSETIEVTFPMLDVLRRTLEAGPVGTETYIATRQGKPMTKESLGNVFKEKCVAAGLANRSAHG
LRKAAATVAAENGATEAELDAIFGWTDRRMASHYTRNANRKKLAYGGVAKLERKIGSEDHRANVYSLTDKLGAGNRTKSS
MKSADVRKDGGHDRDRTCDPYHVKVVLSR

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48554; Mature: 48554

Theoretical pI: Translated: 10.77; Mature: 10.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRFMPRPRKPYLHKEINRHGRTVWYVRNKDVGGKRTRIRGEYGSTEFNRNYDIALAGMF
CCCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCCEEEEECC
NRPRLAIDPSEARAKVFDGSLKWLWEEYKAKAPDWREMKASTHKQRNSLMIHVLEANGNK
CCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEEECCCCC
RAAAIQKQHILDGLGRRAQNPSAARHFLTTMRRMFIWAVAQKILAVDPTEGIKTPKPAKT
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
EGFVTWSDADVRRYYKRWPLGTRERVMIDVYLFTGFRRGDAASFGPADVTEQVQERIGPD
CCEEEECCHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCC
GKLEQISVPIITKRLEKGSETIEVTFPMLDVLRRTLEAGPVGTETYIATRQGKPMTKESL
CCEEEEECHHHHHHHHCCCCEEEEEHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHH
GNVFKEKCVAAGLANRSAHGLRKAAATVAAENGATEAELDAIFGWTDRRMASHYTRNANR
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHCCCCC
KKLAYGGVAKLERKIGSEDHRANVYSLTDKLGAGNRTKSSMKSADVRKDGGHDRDRTCDP
CEEECCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCC
YHVKVVLSR
EEEEEEEEC
>Mature Secondary Structure
MIRFMPRPRKPYLHKEINRHGRTVWYVRNKDVGGKRTRIRGEYGSTEFNRNYDIALAGMF
CCCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCCEEEEECC
NRPRLAIDPSEARAKVFDGSLKWLWEEYKAKAPDWREMKASTHKQRNSLMIHVLEANGNK
CCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEEECCCCC
RAAAIQKQHILDGLGRRAQNPSAARHFLTTMRRMFIWAVAQKILAVDPTEGIKTPKPAKT
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
EGFVTWSDADVRRYYKRWPLGTRERVMIDVYLFTGFRRGDAASFGPADVTEQVQERIGPD
CCEEEECCHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCC
GKLEQISVPIITKRLEKGSETIEVTFPMLDVLRRTLEAGPVGTETYIATRQGKPMTKESL
CCEEEEECHHHHHHHHCCCCEEEEEHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHH
GNVFKEKCVAAGLANRSAHGLRKAAATVAAENGATEAELDAIFGWTDRRMASHYTRNANR
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHCCCCC
KKLAYGGVAKLERKIGSEDHRANVYSLTDKLGAGNRTKSSMKSADVRKDGGHDRDRTCDP
CEEECCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCC
YHVKVVLSR
EEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA