Click here to switch to the map view.

The map label for this gene is yadH [H]

Identifier: 146342469

GI number: 146342469

Start: 5815610

End: 5816371

Strand: Direct

Name: yadH [H]

Synonym: BRADO5628

Alternate gene names: 146342469

Gene position: 5815610-5816371 (Clockwise)

Preceding gene: 146342468

Following gene: 146342471

Centisome position: 77.99

GC content: 61.55

Gene sequence:

>762_bases
ATGAATCTGCGAGCCGTCGGCGCAATCTATAAATTCGAGATGGCCCGCACCTGGCGCACGATCCTGCAGAGCATCGTGTC
GCCGGTCGTCTCGACCTCGCTGTATTTCGTGGTGTTCGGCGCGGCGATCGGCTCGCGCATCAGCGAGGTTCAGGGCGTCA
GCTACGGCACGTTCATCGTGCCCGGTCTCGTGATGCTGTCGGTGCTCACGCAGAGCATCGCCAACGCCTCGTTCGGGATC
TACTTCCCGAAATTCATCGGCACGATCTACGAGATCCTGTCGGCGCCGATCTCGCATGTCGAGATCGTGCTCGGCTATGT
CGGCGCGGCCGCGACCAAATCGATCATTCTCGGCCTGATCATCCTGGCCACGGCCGGGCTGTTCGTGCCGCTGCACATCC
AGCATCCGGTGTGGATGCTGTCGTTCCTGGTGCTCACAGCGGTGACCTTCAGCCTGTTCGGCTTCATCATCGGCATCTGG
GCCGACGGCTTCGAGAAGCTGCAGATGATCCCGATGCTGGTGGTGACGCCGCTGACCTTCCTCGGCGGCAGCTTCTACTC
GGTCAACATGCTGCCGCCGACCTGGCACTCGATCGCGCTGCTCAACCCGGTGGTCTACCTGATCTCCGGCTTCCGCTGGA
GCTTCTATGAGATCGCCGACGTCAGGGTGGAGATCAGCGTCGCGATGACGTTGGCGTTCCTCGCGATCTGCATGACCGTG
ATCTGGTGGATCTTCAAGACGGGCTATCGGCTCAAGCGCTGA

Upstream 100 bases:

>100_bases
CCAGCCTGCTCGGCGATCTCCGCTCCGCCGGCATCCGCTTCGTCGATCTCGAGACCAAGCAATCCTCCCTCGAAGACATC
TTCGTCAGCCTGGTGAGCCA

Downstream 100 bases:

>100_bases
GCCGGCGCCGCTCGGGCTACTTGTAGCAGTGGAAGTGACCGTAGCCGTCGCGATAACCGCGGCAATGATAGTGCCGGTGA
TAGTAGGCGCGATGCGGAAT

Product: putative ABC-2 type transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MNLRAVGAIYKFEMARTWRTILQSIVSPVVSTSLYFVVFGAAIGSRISEVQGVSYGTFIVPGLVMLSVLTQSIANASFGI
YFPKFIGTIYEILSAPISHVEIVLGYVGAAATKSIILGLIILATAGLFVPLHIQHPVWMLSFLVLTAVTFSLFGFIIGIW
ADGFEKLQMIPMLVVTPLTFLGGSFYSVNMLPPTWHSIALLNPVVYLISGFRWSFYEIADVRVEISVAMTLAFLAICMTV
IWWIFKTGYRLKR

Sequences:

>Translated_253_residues
MNLRAVGAIYKFEMARTWRTILQSIVSPVVSTSLYFVVFGAAIGSRISEVQGVSYGTFIVPGLVMLSVLTQSIANASFGI
YFPKFIGTIYEILSAPISHVEIVLGYVGAAATKSIILGLIILATAGLFVPLHIQHPVWMLSFLVLTAVTFSLFGFIIGIW
ADGFEKLQMIPMLVVTPLTFLGGSFYSVNMLPPTWHSIALLNPVVYLISGFRWSFYEIADVRVEISVAMTLAFLAICMTV
IWWIFKTGYRLKR
>Mature_253_residues
MNLRAVGAIYKFEMARTWRTILQSIVSPVVSTSLYFVVFGAAIGSRISEVQGVSYGTFIVPGLVMLSVLTQSIANASFGI
YFPKFIGTIYEILSAPISHVEIVLGYVGAAATKSIILGLIILATAGLFVPLHIQHPVWMLSFLVLTAVTFSLFGFIIGIW
ADGFEKLQMIPMLVVTPLTFLGGSFYSVNMLPPTWHSIALLNPVVYLISGFRWSFYEIADVRVEISVAMTLAFLAICMTV
IWWIFKTGYRLKR

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1786320, Length=248, Percent_Identity=39.9193548387097, Blast_Score=190, Evalue=6e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 27979; Mature: 27979

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHCCCCCCC
>Mature Secondary Structure
MNLRAVGAIYKFEMARTWRTILQSIVSPVVSTSLYFVVFGAAIGSRISEVQGVSYGTFIV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
PGLVMLSVLTQSIANASFGIYFPKFIGTIYEILSAPISHVEIVLGYVGAAATKSIILGLI
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
ILATAGLFVPLHIQHPVWMLSFLVLTAVTFSLFGFIIGIWADGFEKLQMIPMLVVTPLTF
HHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGGSFYSVNMLPPTWHSIALLNPVVYLISGFRWSFYEIADVRVEISVAMTLAFLAICMTV
HCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IWWIFKTGYRLKR
HHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]