| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is yfeW [C]
Identifier: 146342375
GI number: 146342375
Start: 5717572
End: 5719122
Strand: Direct
Name: yfeW [C]
Synonym: BRADO5532
Alternate gene names: 146342375
Gene position: 5717572-5719122 (Clockwise)
Preceding gene: 146342374
Following gene: 146342376
Centisome position: 76.68
GC content: 65.25
Gene sequence:
>1551_bases ATGATGCGTCTCATGGCATCATTCGCAACCCTGCTTGTCGTCGGTCTGCTGATCAATGCAGCTTCGGCCGAGGATGCCGG CCTCGCCGGCTTCCCTCAACCCGATTGGGCGACCGCCACGCCCGAAGAAGAAGGCATGGATTCCGCCGCGCTGGCGAAGC TCGTCGCGATGGGCAAGGCGATGCGGTTCGACAGCCTGCTGATCACGCGTCATGGCCGGGTCGTGCTGGATGCCTCCTAC GCGCCGTACAGCGCCGATCAACCGCACATCATCAATTCCTCGACAAAGGCGGTCGTCGCGACGTTGATCGCGATGCTGCT CAAGGACGGCGTGCTCGACAGCCTCGATCATCCGGTGCTCGACTTCTTTGCGGATCGCAAGATCGATAATGTCGACGCGC GCAAGCAGGCGCTGACGGTGCAGCATCTGCTCAACATGACCTCCGGCTTCGACTGGGACGAAGGTTATAATGGCGGCGCC GAAACGTCGCTCTACGAGATGGGCCGCAGCCCGGACTGGGTGCAGTACATTCTCGACCGGCCGATGGCGCATGCGCCCGG CGAGACGTTCTACTACAACAGCGGCAACTCGCATCTGCTGTCCGCGATCGTCACCAAGCTCACCGGCAAGAGCGCGGAGG ATTTTGCCCAGGAGCGACTGTTCGGGCCGCTCGGCATCAGCGAGCACGCCTGGTTCAAGGATTCCAAGGGGATCTCCAGC GGCGGCTTCGGGCTGGCGCTGAAGCCGCGCGACATGGCGAAGCTCGGCTACCTCTATCTGCGCGGCGGCCGCTGGGGCGC GCAGCAATTGCTGCCGCCCGACTGGATCGACGCCGTCAACCATGCCACCGTCAGCATGAATGCGAAATTCGATCCCGGGC TCTCCTACGCCGATCAGTTCTGGGCCCTGCCCGACAAGCACGTATTCATGGCAGTAGGCTATCACTGCCAGGTGATCATG GTGCTGCCCGATCGCGACATCGTGGCGGTGATGACGGCGCGTGACTTCTGTCCGTTCCGCAAGCTCGCCAATGCCATCGT GGCGGCCGCGACGTCCGACAGCACGCTGCCGGCGGCGCCCGACGCGGCGGCCGCGCTCGCCACTGATGTCCGCGAGGCCG CGACGGAACTGCGAGGCCCCGTCGGCGCGGTGCCGGAGACCGCGGCGGCCATCTCTGGGAAGACCTACAGCTTCCCGCCT GGCCCGCTCGGCATCAACACGATCAAGCTCGACCTCATGGGACCCGAGCCGCAGGTCACCTGGGACATCCCGTCGCGAGA CCGCTCCGGCGGCACGGTGCATCTGCAGAGCCCGATCGGCCTCGACGGCCTCTATCGCAAGACCGTGCCACCGCATCCGT GGGAGCCCTTCGTCTACCGGGCGATGAAGGGCAGCTGGGTCGACGCCATGACCTTCACGATCGACGTGCAGTTCATCGGC CAGGGCGAGGAGCGCAACTGGCGGCTCAGCTTCGACGGCGACAAGGTGACGTTCCGGACCAAGGGCCGCTATGGCAAGGA CGTGGCGGTGGAGGGACAGGCCGTCAACTAG
Upstream 100 bases:
>100_bases TTACGGCGGCTCGACGCGCGCAGCAGTCATCACACAATCTTCGGTGGATTGCGGTCGTCTGATACCCTAAGATGACGTCG CTCATCGGAGGACATCCGAC
Downstream 100 bases:
>100_bases GTCAAACGCCGTTTCCCGAGCTGGCAGCGTGCTGCCATCGCGCGTTCTTCCGCGTGATCAATCCAGTTTGTATTTAGAAC CCCGTCGCGGGGCTCGCGTT
Product: putative beta-lactamase
Products: NA
Alternate protein names: 6-Aminohexanoate-Dimer Hydrolase; Beta-Lactamase Family Protein; Beta-Lactamase Class C; 6-Aminohexanoate-Dimer Hydrolase Protein; Hydrolase Transmembrane Protein; 6-Aminohexanoate-Dimer Hydrolase Lipoprotein; Secreted Beta-Lactamase Family Protein; Hydrolase; Beta-Lactamase Class C Protein; Membrane Or Secreted Beta-Lactamase Family Protein; Exported 6-Aminohexanoate-Dimer Hydrolase Protein; Beta-Lactamase Class C-Like Protein; Hydrolatse Transmembrane Protein; Beta-Lactamase-Like Hydrolase
Number of amino acids: Translated: 516; Mature: 516
Protein sequence:
>516_residues MMRLMASFATLLVVGLLINAASAEDAGLAGFPQPDWATATPEEEGMDSAALAKLVAMGKAMRFDSLLITRHGRVVLDASY APYSADQPHIINSSTKAVVATLIAMLLKDGVLDSLDHPVLDFFADRKIDNVDARKQALTVQHLLNMTSGFDWDEGYNGGA ETSLYEMGRSPDWVQYILDRPMAHAPGETFYYNSGNSHLLSAIVTKLTGKSAEDFAQERLFGPLGISEHAWFKDSKGISS GGFGLALKPRDMAKLGYLYLRGGRWGAQQLLPPDWIDAVNHATVSMNAKFDPGLSYADQFWALPDKHVFMAVGYHCQVIM VLPDRDIVAVMTARDFCPFRKLANAIVAAATSDSTLPAAPDAAAALATDVREAATELRGPVGAVPETAAAISGKTYSFPP GPLGINTIKLDLMGPEPQVTWDIPSRDRSGGTVHLQSPIGLDGLYRKTVPPHPWEPFVYRAMKGSWVDAMTFTIDVQFIG QGEERNWRLSFDGDKVTFRTKGRYGKDVAVEGQAVN
Sequences:
>Translated_516_residues MMRLMASFATLLVVGLLINAASAEDAGLAGFPQPDWATATPEEEGMDSAALAKLVAMGKAMRFDSLLITRHGRVVLDASY APYSADQPHIINSSTKAVVATLIAMLLKDGVLDSLDHPVLDFFADRKIDNVDARKQALTVQHLLNMTSGFDWDEGYNGGA ETSLYEMGRSPDWVQYILDRPMAHAPGETFYYNSGNSHLLSAIVTKLTGKSAEDFAQERLFGPLGISEHAWFKDSKGISS GGFGLALKPRDMAKLGYLYLRGGRWGAQQLLPPDWIDAVNHATVSMNAKFDPGLSYADQFWALPDKHVFMAVGYHCQVIM VLPDRDIVAVMTARDFCPFRKLANAIVAAATSDSTLPAAPDAAAALATDVREAATELRGPVGAVPETAAAISGKTYSFPP GPLGINTIKLDLMGPEPQVTWDIPSRDRSGGTVHLQSPIGLDGLYRKTVPPHPWEPFVYRAMKGSWVDAMTFTIDVQFIG QGEERNWRLSFDGDKVTFRTKGRYGKDVAVEGQAVN >Mature_516_residues MMRLMASFATLLVVGLLINAASAEDAGLAGFPQPDWATATPEEEGMDSAALAKLVAMGKAMRFDSLLITRHGRVVLDASY APYSADQPHIINSSTKAVVATLIAMLLKDGVLDSLDHPVLDFFADRKIDNVDARKQALTVQHLLNMTSGFDWDEGYNGGA ETSLYEMGRSPDWVQYILDRPMAHAPGETFYYNSGNSHLLSAIVTKLTGKSAEDFAQERLFGPLGISEHAWFKDSKGISS GGFGLALKPRDMAKLGYLYLRGGRWGAQQLLPPDWIDAVNHATVSMNAKFDPGLSYADQFWALPDKHVFMAVGYHCQVIM VLPDRDIVAVMTARDFCPFRKLANAIVAAATSDSTLPAAPDAAAALATDVREAATELRGPVGAVPETAAAISGKTYSFPP GPLGINTIKLDLMGPEPQVTWDIPSRDRSGGTVHLQSPIGLDGLYRKTVPPHPWEPFVYRAMKGSWVDAMTFTIDVQFIG QGEERNWRLSFDGDKVTFRTKGRYGKDVAVEGQAVN
Specific function: Unknown
COG id: COG1680
COG function: function code V; Beta-lactamase class C and other penicillin binding proteins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56056; Mature: 56056
Theoretical pI: Translated: 5.61; Mature: 5.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMRLMASFATLLVVGLLINAASAEDAGLAGFPQPDWATATPEEEGMDSAALAKLVAMGKA CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHH MRFDSLLITRHGRVVLDASYAPYSADQPHIINSSTKAVVATLIAMLLKDGVLDSLDHPVL HHHCEEEEEECCCEEEECCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCHHHCCCHHH DFFADRKIDNVDARKQALTVQHLLNMTSGFDWDEGYNGGAETSLYEMGRSPDWVQYILDR HHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHCC PMAHAPGETFYYNSGNSHLLSAIVTKLTGKSAEDFAQERLFGPLGISEHAWFKDSKGISS CCCCCCCCEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC GGFGLALKPRDMAKLGYLYLRGGRWGAQQLLPPDWIDAVNHATVSMNAKFDPGLSYADQF CCCEEEECCHHHHHCCEEEEECCCCCHHHCCCCHHHHHHCCEEEEECCCCCCCCCHHHHH WALPDKHVFMAVGYHCQVIMVLPDRDIVAVMTARDFCPFRKLANAIVAAATSDSTLPAAP HCCCCCCEEEEECCEEEEEEEECCCCEEEEEEHHCCCHHHHHHHHHEEECCCCCCCCCCC DAAAALATDVREAATELRGPVGAVPETAAAISGKTYSFPPGPLGINTIKLDLMGPEPQVT CHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCEE WDIPSRDRSGGTVHLQSPIGLDGLYRKTVPPHPWEPFVYRAMKGSWVDAMTFTIDVQFIG EECCCCCCCCCEEEECCCCCCCCHHHCCCCCCCCCHHHHHHHCCCEEEEEEEEEEEEEEE QGEERNWRLSFDGDKVTFRTKGRYGKDVAVEGQAVN CCCCCCEEEEECCCEEEEEECCCCCCCEEECCCCCC >Mature Secondary Structure MMRLMASFATLLVVGLLINAASAEDAGLAGFPQPDWATATPEEEGMDSAALAKLVAMGKA CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHH MRFDSLLITRHGRVVLDASYAPYSADQPHIINSSTKAVVATLIAMLLKDGVLDSLDHPVL HHHCEEEEEECCCEEEECCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCHHHCCCHHH DFFADRKIDNVDARKQALTVQHLLNMTSGFDWDEGYNGGAETSLYEMGRSPDWVQYILDR HHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHCC PMAHAPGETFYYNSGNSHLLSAIVTKLTGKSAEDFAQERLFGPLGISEHAWFKDSKGISS CCCCCCCCEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC GGFGLALKPRDMAKLGYLYLRGGRWGAQQLLPPDWIDAVNHATVSMNAKFDPGLSYADQF CCCEEEECCHHHHHCCEEEEECCCCCHHHCCCCHHHHHHCCEEEEECCCCCCCCCHHHHH WALPDKHVFMAVGYHCQVIMVLPDRDIVAVMTARDFCPFRKLANAIVAAATSDSTLPAAP HCCCCCCEEEEECCEEEEEEEECCCCEEEEEEHHCCCHHHHHHHHHEEECCCCCCCCCCC DAAAALATDVREAATELRGPVGAVPETAAAISGKTYSFPPGPLGINTIKLDLMGPEPQVT CHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCEE WDIPSRDRSGGTVHLQSPIGLDGLYRKTVPPHPWEPFVYRAMKGSWVDAMTFTIDVQFIG EECCCCCCCCCEEEECCCCCCCCHHHCCCCCCCCCHHHHHHHCCCEEEEEEEEEEEEEEE QGEERNWRLSFDGDKVTFRTKGRYGKDVAVEGQAVN CCCCCCEEEEECCCEEEEEECCCCCCCEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA