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The map label for this gene is csiR [H]

Identifier: 146342344

GI number: 146342344

Start: 5682000

End: 5682698

Strand: Direct

Name: csiR [H]

Synonym: BRADO5500

Alternate gene names: 146342344

Gene position: 5682000-5682698 (Clockwise)

Preceding gene: 146342343

Following gene: 146342345

Centisome position: 76.2

GC content: 68.38

Gene sequence:

>699_bases
ATGACGGCCTCGACACCAATCCTGCAGACCGAGACGGCGAGCGGCGATACGCTCAGCGAGCGGGCCGCCGCGCTGATCGA
GCGCGACATCGTCGCGGGCGTTCTCACGCCCGGCTCGCGGCTCGGCATCGTCGAGCTCGCCAGACGCTACGAGATCGGGC
CGACACCGGTGCGCGAGGGGCTGTCCCGGCTGGTGTCGCGCGGTCTGATCGTCGGCATCGGCCAGCGCGGGTTTCGCGTC
GCCGAGGTGAGCCGTGAGGATCTCGTGGACATCACGCGGATGCGCACGGTGGTGGAGAATGAGGCGCTGCGGCTGGCGAT
GCAGAACGGCGGCGACTCCTGGGAGGCCGGCATCATTGCAGCGCTGCACCAGATGCGACGCTACATCCAGCGCATGCAAA
GCGAATTCCGCGAGGGCGCGCCTGAGTTCGATCGCCTGCACAAGGCGTTTCATACTGCCCTGCTCGACGCCTGCGGATCG
CGCCGCCTGCTCGCCGCCCATTCCGATCTCTACGACCAGGCCTACCGTTACCGCCGTGTGATGATGCGCAGCTTCGACGA
CGGCAGCGGCTTCATCCGGGAGCACGAGGCACTCGCCGAACTCGTGCTCGCGCGCGATGCCGCCGCCGCGCAGGCGCGGC
TCGCAGCGCATCTGCGCTCGACGATAGAGATCGTGTATCCCCAGCCCAAGGGAGCCTGA

Upstream 100 bases:

>100_bases
CGGAGCTGAAGCCGGAACAGCTCGCATGGTGGATCGACGTCATGTCGGCGCAGAAGATGCTGCAGAGCAAGCTGGACCTC
AAGAAGCTGATCCTCAATTG

Downstream 100 bases:

>100_bases
GATGGCGGAGCCTGCCCTCGCTTTGGTCCAATCATCTCCCTCGCCCGCGCGGGCGCAGATCGCGTTCGAGAATGTCGCGC
TGGTGCTCGGCGGCAAGGCG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Carbon starvation induced regulator [H]

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MTASTPILQTETASGDTLSERAAALIERDIVAGVLTPGSRLGIVELARRYEIGPTPVREGLSRLVSRGLIVGIGQRGFRV
AEVSREDLVDITRMRTVVENEALRLAMQNGGDSWEAGIIAALHQMRRYIQRMQSEFREGAPEFDRLHKAFHTALLDACGS
RRLLAAHSDLYDQAYRYRRVMMRSFDDGSGFIREHEALAELVLARDAAAAQARLAAHLRSTIEIVYPQPKGA

Sequences:

>Translated_232_residues
MTASTPILQTETASGDTLSERAAALIERDIVAGVLTPGSRLGIVELARRYEIGPTPVREGLSRLVSRGLIVGIGQRGFRV
AEVSREDLVDITRMRTVVENEALRLAMQNGGDSWEAGIIAALHQMRRYIQRMQSEFREGAPEFDRLHKAFHTALLDACGS
RRLLAAHSDLYDQAYRYRRVMMRSFDDGSGFIREHEALAELVLARDAAAAQARLAAHLRSTIEIVYPQPKGA
>Mature_231_residues
TASTPILQTETASGDTLSERAAALIERDIVAGVLTPGSRLGIVELARRYEIGPTPVREGLSRLVSRGLIVGIGQRGFRVA
EVSREDLVDITRMRTVVENEALRLAMQNGGDSWEAGIIAALHQMRRYIQRMQSEFREGAPEFDRLHKAFHTALLDACGSR
RLLAAHSDLYDQAYRYRRVMMRSFDDGSGFIREHEALAELVLARDAAAAQARLAAHLRSTIEIVYPQPKGA

Specific function: Modulates expression of csiD and lhgO in a temporal manner during entry into stationary phase or during the first few hours of carbon starvation [H]

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082149, Length=204, Percent_Identity=36.2745098039216, Blast_Score=121, Evalue=3e-29,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25713; Mature: 25582

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTASTPILQTETASGDTLSERAAALIERDIVAGVLTPGSRLGIVELARRYEIGPTPVREG
CCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHH
LSRLVSRGLIVGIGQRGFRVAEVSREDLVDITRMRTVVENEALRLAMQNGGDSWEAGIIA
HHHHHHCCEEEEECCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
ALHQMRRYIQRMQSEFREGAPEFDRLHKAFHTALLDACGSRRLLAAHSDLYDQAYRYRRV
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
MMRSFDDGSGFIREHEALAELVLARDAAAAQARLAAHLRSTIEIVYPQPKGA
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCC
>Mature Secondary Structure 
TASTPILQTETASGDTLSERAAALIERDIVAGVLTPGSRLGIVELARRYEIGPTPVREG
CCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHH
LSRLVSRGLIVGIGQRGFRVAEVSREDLVDITRMRTVVENEALRLAMQNGGDSWEAGIIA
HHHHHHCCEEEEECCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
ALHQMRRYIQRMQSEFREGAPEFDRLHKAFHTALLDACGSRRLLAAHSDLYDQAYRYRRV
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
MMRSFDDGSGFIREHEALAELVLARDAAAAQARLAAHLRSTIEIVYPQPKGA
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8297211; 7984428 [H]