BacMap

Definition	Bradyrhizobium sp. ORS278 chromosome, complete genome.
Accession	NC_009445
Length	7,456,587

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The map label for this gene is ssuB [H]

Identifier: 146342319

GI number: 146342319

Start: 5658270

End: 5658980

Strand: Direct

Name: ssuB [H]

Synonym: BRADO5474

Alternate gene names: 146342319

Gene position: 5658270-5658980 (Clockwise)

Preceding gene: 146342318

Following gene: 146342320

Centisome position: 75.88

GC content: 69.34

Gene sequence:

>711_bases
GTGCGGCTTGAGGTCGATATCAGGTCAAAGAGCTACACCAGCGCCAATGGCAAGCGCCAGGAGGTGATATCAGGCATTGC
CTTCACCCTGGAGCGCGGAGAGCTCGGCGTCGTGGTCGGCCCCTCCGGCTGCGGCAAGAGCACGATGATGCGGATCCTCG
CCGGCCTGGATAGCGACTACGAGGGGCGCGTCTCCCAACCGGCCGGCGCCCGGCTGGCCATGGTGTTTCAGGAGCCACGG
CTACTGCCCTGGCGCTCGGTTGATGCCAATGTCCGGCTGGCGGCGCCTGAGGTCACCGCGGAGCGGCTCGCCGCGATCTT
CGGCGTGCTCGAGCTCGAAAGCCATCGCAGCCATTTTCCCGGCGAGCTGTCGCTCGGCCTCGCCCGCCGCGTCGCGCTGG
CGCGGGCCTTCGCGGTCGAGCCGGACTTCCTGATCCTCGACGAGCCGCTGGCCTCGCTCGACGACGCGTTGGCCGCACGG
CTGCGCGAGGAGATCGCCACGCTGGTGGCATCGCGGCCGATGATCACGCTGCTGGTGACGCACAGCATGGACGATGCGGC
GCGGCTCGGCGATCGCATCTTCCTGCTATCCGCGCGCCCCGCCCGGCTGCTGCGCACGACGCCAATCACCGTGCCGCGCG
CCGAGCGCAGCGAGGAGACCGTGGCCGCCATCAGGGCCGATCTGGCGCGGCGGGATTTTTCCATGTCATAG

Upstream 100 bases:

>100_bases
CTGCTGCTCGCCTACTCCCTCAGCTTCGCCGCCGTCGTTCTGGTGATCGAAGCTCTCTTCGTGCAGCCATTCGAGCAGCG
CGCATCGAGGTGGCGTCTCC

Downstream 100 bases:

>100_bases
TGAGGGAAATAAACATCAGAACCCAGGGAAACGCCTATGAGATCCGCCCTCGCCGTGACCGCTCTCGTTTTGTCAGCTCT
GCCGATCGCAGTGTCCGCCC

Product: putative ABC transporter ATP-binding protein

Products: taurine [Cytoplasm]; ADP; phosphate [C]

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MRLEVDIRSKSYTSANGKRQEVISGIAFTLERGELGVVVGPSGCGKSTMMRILAGLDSDYEGRVSQPAGARLAMVFQEPR
LLPWRSVDANVRLAAPEVTAERLAAIFGVLELESHRSHFPGELSLGLARRVALARAFAVEPDFLILDEPLASLDDALAAR
LREEIATLVASRPMITLLVTHSMDDAARLGDRIFLLSARPARLLRTTPITVPRAERSEETVAAIRADLARRDFSMS

Sequences:

>Translated_236_residues
MRLEVDIRSKSYTSANGKRQEVISGIAFTLERGELGVVVGPSGCGKSTMMRILAGLDSDYEGRVSQPAGARLAMVFQEPR
LLPWRSVDANVRLAAPEVTAERLAAIFGVLELESHRSHFPGELSLGLARRVALARAFAVEPDFLILDEPLASLDDALAAR
LREEIATLVASRPMITLLVTHSMDDAARLGDRIFLLSARPARLLRTTPITVPRAERSEETVAAIRADLARRDFSMS
>Mature_236_residues
MRLEVDIRSKSYTSANGKRQEVISGIAFTLERGELGVVVGPSGCGKSTMMRILAGLDSDYEGRVSQPAGARLAMVFQEPR
LLPWRSVDANVRLAAPEVTAERLAAIFGVLELESHRSHFPGELSLGLARRVALARAFAVEPDFLILDEPLASLDDALAAR
LREEIATLVASRPMITLLVTHSMDDAARLGDRIFLLSARPARLLRTTPITVPRAERSEETVAAIRADLARRDFSMS

Specific function: Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system [H]

COG id: COG1116

COG function: function code P; ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI9955968, Length=198, Percent_Identity=30.3030303030303, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI9955966, Length=198, Percent_Identity=30.3030303030303, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI45243524, Length=198, Percent_Identity=30.3030303030303, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI27262624, Length=199, Percent_Identity=24.6231155778894, Blast_Score=64, Evalue=9e-11,
Organism=Homo sapiens, GI27262626, Length=199, Percent_Identity=24.6231155778894, Blast_Score=64, Evalue=9e-11,
Organism=Escherichia coli, GI1786563, Length=245, Percent_Identity=34.2857142857143, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI87082267, Length=213, Percent_Identity=36.150234741784, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1790467, Length=188, Percent_Identity=36.7021276595745, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI87081791, Length=211, Percent_Identity=30.8056872037915, Blast_Score=103, Evalue=9e-24,
Organism=Escherichia coli, GI1787164, Length=198, Percent_Identity=35.3535353535354, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI87081709, Length=191, Percent_Identity=32.4607329842932, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI1787370, Length=193, Percent_Identity=33.6787564766839, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1789032, Length=192, Percent_Identity=32.8125, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI1786253, Length=186, Percent_Identity=34.9462365591398, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1788761, Length=216, Percent_Identity=29.1666666666667, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1789672, Length=200, Percent_Identity=32, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1787758, Length=200, Percent_Identity=29, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787029, Length=232, Percent_Identity=30.6034482758621, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1786703, Length=214, Percent_Identity=34.5794392523364, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1786872, Length=210, Percent_Identity=27.1428571428571, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1787712, Length=197, Percent_Identity=30.9644670050761, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1789891, Length=213, Percent_Identity=31.924882629108, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788450, Length=206, Percent_Identity=28.1553398058252, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI87081834, Length=208, Percent_Identity=28.8461538461538, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1789873, Length=213, Percent_Identity=30.5164319248826, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788506, Length=199, Percent_Identity=28.643216080402, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1786398, Length=197, Percent_Identity=28.9340101522843, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1790162, Length=200, Percent_Identity=30, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1787792, Length=201, Percent_Identity=30.3482587064677, Blast_Score=77, Evalue=7e-16,
Organism=Escherichia coli, GI1788225, Length=207, Percent_Identity=29.4685990338164, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788053, Length=181, Percent_Identity=32.0441988950276, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1789962, Length=200, Percent_Identity=27, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787500, Length=228, Percent_Identity=25.4385964912281, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI145693107, Length=211, Percent_Identity=29.3838862559242, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1787089, Length=202, Percent_Identity=29.7029702970297, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1787547, Length=219, Percent_Identity=27.8538812785388, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI87081782, Length=190, Percent_Identity=30.5263157894737, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1789890, Length=219, Percent_Identity=29.2237442922374, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1789963, Length=205, Percent_Identity=29.2682926829268, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787105, Length=227, Percent_Identity=29.5154185022026, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787759, Length=229, Percent_Identity=28.3842794759825, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1786319, Length=216, Percent_Identity=29.1666666666667, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789586, Length=217, Percent_Identity=29.0322580645161, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI2367384, Length=177, Percent_Identity=29.3785310734463, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787548, Length=262, Percent_Identity=25.1908396946565, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786981, Length=186, Percent_Identity=30.6451612903226, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI1787113, Length=198, Percent_Identity=34.8484848484849, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI48995001, Length=201, Percent_Identity=29.3532338308458, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789864, Length=241, Percent_Identity=25.7261410788382, Blast_Score=62, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71992290, Length=215, Percent_Identity=26.5116279069767, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71983523, Length=200, Percent_Identity=25.5, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI71983516, Length=200, Percent_Identity=25.5, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI71983510, Length=200, Percent_Identity=25.5, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI116007184, Length=190, Percent_Identity=26.8421052631579, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI221500365, Length=190, Percent_Identity=26.8421052631579, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI85726357, Length=199, Percent_Identity=28.643216080402, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR017875
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 25775; Mature: 25775

Theoretical pI: Translated: 7.62; Mature: 7.62

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLEVDIRSKSYTSANGKRQEVISGIAFTLERGELGVVVGPSGCGKSTMMRILAGLDSDY
CEEEEEECCCCCCCCCCHHHHHHHHHHEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCC
EGRVSQPAGARLAMVFQEPRLLPWRSVDANVRLAAPEVTAERLAAIFGVLELESHRSHFP
CCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCC
GELSLGLARRVALARAFAVEPDFLILDEPLASLDDALAARLREEIATLVASRPMITLLVT
CHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
HSMDDAARLGDRIFLLSARPARLLRTTPITVPRAERSEETVAAIRADLARRDFSMS
CCCCHHHHCCCEEEEEECCCHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRLEVDIRSKSYTSANGKRQEVISGIAFTLERGELGVVVGPSGCGKSTMMRILAGLDSDY
CEEEEEECCCCCCCCCCHHHHHHHHHHEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCC
EGRVSQPAGARLAMVFQEPRLLPWRSVDANVRLAAPEVTAERLAAIFGVLELESHRSHFP
CCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCC
GELSLGLARRVALARAFAVEPDFLILDEPLASLDDALAARLREEIATLVASRPMITLLVT
CHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
HSMDDAARLGDRIFLLSARPARLLRTTPITVPRAERSEETVAAIRADLARRDFSMS
CCCCHHHHCCCEEEEEECCCHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: taurine [Periplasm]; ATP; H2O [C]

Specific reaction: taurine [Periplasm] + ATP + H2O = taurine [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA