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The map label for this gene is speF [H]

Identifier: 146341800

GI number: 146341800

Start: 5119027

End: 5121384

Strand: Direct

Name: speF [H]

Synonym: BRADO4919

Alternate gene names: 146341800

Gene position: 5119027-5121384 (Clockwise)

Preceding gene: 146341796

Following gene: 146341801

Centisome position: 68.65

GC content: 65.27

Gene sequence:

>2358_bases
ATGGATTACTTCCGCCGCTTCACCTTCCTGTTCGCCGCGCCCGTCTTCGAAACCGACGACCTGGCCGGCGTCCGCTTCAA
CCAGATCATCGAGGAGATCCAGCGCTCGGGCTTCGAGGTCGTCCGCGCCCGCAAGCTGGAGGATGCCGAGATCGCGGTGC
AGACGGATGCGGCGATCGGCTGCATGGTGGTGGACTGGGGCAAGAAGGGGCTGGAGGGCAAGACGGCGTCGCTGATCAAC
CTGATGCGCCGCCGCGGCCTGGACTTCCCGATCATCCTCCTGATCCGGCGCAAGCGGTTCGAGGATCTGCCGGTCGAGGT
GCTCGACTTCATCGACGGCTATGTCTTCCTCTCCGAGGAGACGCCGGCGTTCATCGCCAAGAATTTGATCAGCCGGCTCA
AGCAATATGCCGAGACGCTCAAGACGCCGTTCTTCGGCACGCTGGTCGACTATGCCGAGGAAGGCAACCAGCTCTGGACC
TGTCCCGGGCACAATGGCGGCGTATTCTACAGCCGCAGCCCGATCGGGCGGATCTTCGTCGAGCATTTGGGCGAGGCGGT
GTTCCGCGACGACCTCGACAATTCCGTGCTCGACCTCGGCGATCTCCTCACCCATGAAGGGCCGGCGCTGCGCGCGCAGA
AGGAGGCGGCTCAGATCTTCGGCGCCGAGAAGACCTATTTCGTGCTCAACGGCACCTCGACCTCCAACAAGGTCGTGCTG
GGGGCGCTGGTCACCGACGGCGACCTTGTGCTTTTCGACCGCAACAACCACAAGGCCGCCCATCACGGAGCCCTGCTGAT
CTCCGGCGGAATCCCGGTCTATGTGCCCACCGTCCGCAACGCCTGGGGCCTGATCGGGCCAATGCGCTGGGACCTCCTCG
ACGAGGAGCACCTGCGGCAGCAGATCCGCAACAATCCGCTCGTCAAGGACCCCGATGCCTGGCGCAAGGAGCGGCCGTTC
CGCGTCGCCGTCGTCGAGGAGTGTACTTACGACGGCACCATCCACAGCGCCGAGATGATCCTCAAGCGCATCGGCCACCT
CTGCGACTACATCATGTTCGACGAGGCCTGGGCCGGCTTCATGAAGTTTCACCCGCTCTATGCCGGCCGCTTCGCGATGG
GCCTCTCCGAGCTCGGGCCGGACGCCCCCGGAATTATCGCGACGCAGTCGACCCACAAGCAGCTCGCGAGCTTCTCGCAG
GCCTCGCAGATCCACATCAAGGACCGCCACATCAAGGGCCAGCGCCGCCGGGTCGAGCATCGCCGCTTCAACGAGAGCTT
CATGCAGCACGCCTCGACCTCGCCCTTCTATCCGCTGTTCGCCTCGCTCGATGTCGGCGCGCAGATGATGAAGGGCCGCT
CGGGCGAGGTGCTGTGGGACGACACGATCCGGCTCGGGATCGAATTGCGCAAGAAGATCCGGGCGATGCGCCGCGAGTTC
GACGAGAAGGAGAAGGATCCGGCGCGGCGCTGGTTCTTCGAGCCGTTCGTGCCGGACCGGGTGTCGATCCCCGATGCCGC
GAGTCCCGGCGGCCGCCACGACGTCGCTTGGGAGGCGATCTCGACCGACCAGCTCGCGACCGACGCCACGCTCTGGCAGC
TCGCGCCAGGCGAGGCCTGGCACGGCTTCCCGGACCTCGCGCCCGGCTTCGCCATGACCGATCCGAACAAGCTGACCCTG
CTCACCCCCGGTTTCGACCGTTCCACCGGCGGCTATGCCGAGCACGGCATACCGGCGCCGGTCGTGGCGCAATATCTGCG
CGAGAATCGCATCGTCGCCGAGAAGAACGACCTCAACTCGCTGCTCTTCCTGCTCACTCCCGGCGTCGAGGCCAGCAAGG
CCGGCACTTTGATTAGCGGGCTCGTCGCCTTCAAGCGGCTGCATGACGACAACGTGCTGCTCGACGACGCCATCCCCGAG
TTCACCCGCAAGCGCTTCGCGCGCTACGGCAAGACCCGGCTGCGCGACCTCTGCGGCGAGATGCACCGCTTCTACCGCGA
GGCCGAGGTCAGCGCGCTGCAGGCGAAGCAGTTTCAGCCGCAGCATCTGCCCGAGATCGCGCTGTCGCCGCGCGAGGCGG
CCCGCGCGCTGATGCGCAACGAGGTCGACTACCTGCCGATCGACCAGATCGCCGGCCGCATCGCGACCACCCCCTTCGTG
GTTTATCCGCCGGGCATCGCCACGATCGTCCCTGGAGAGCGGTTGTCCGATCGCGCCAAGCCGATGATCGATTACCTCAA
GATGTTCGAGCGGGCGTTCAACACATTCCCCGGCTTCGACGTCGAGATTCAGGGATTGTATAAGGAGATCGACGAGTCTG
GCCGGATCCGGCTCTATACCTATGTCTGCGCAGAGTAA

Upstream 100 bases:

>100_bases
GAAACAGCCGGCACCGGCATTCCTCCACGGCCCACTTTGTCATCCAACTGTCATCGAACCATCCGACAGGTGGCTGCCCT
ACCCAGCCCGAAAGATGCCC

Downstream 100 bases:

>100_bases
TCTGACCATGGACACCCCGATCGCGGCGCTCGAGACCGAACCGCAAGTCCTCGTCCGCCCGTCCCGTGACGAGGACGTCG
AGGCGATGCTCGCGATCTAC

Product: ornithine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 785; Mature: 785

Protein sequence:

>785_residues
MDYFRRFTFLFAAPVFETDDLAGVRFNQIIEEIQRSGFEVVRARKLEDAEIAVQTDAAIGCMVVDWGKKGLEGKTASLIN
LMRRRGLDFPIILLIRRKRFEDLPVEVLDFIDGYVFLSEETPAFIAKNLISRLKQYAETLKTPFFGTLVDYAEEGNQLWT
CPGHNGGVFYSRSPIGRIFVEHLGEAVFRDDLDNSVLDLGDLLTHEGPALRAQKEAAQIFGAEKTYFVLNGTSTSNKVVL
GALVTDGDLVLFDRNNHKAAHHGALLISGGIPVYVPTVRNAWGLIGPMRWDLLDEEHLRQQIRNNPLVKDPDAWRKERPF
RVAVVEECTYDGTIHSAEMILKRIGHLCDYIMFDEAWAGFMKFHPLYAGRFAMGLSELGPDAPGIIATQSTHKQLASFSQ
ASQIHIKDRHIKGQRRRVEHRRFNESFMQHASTSPFYPLFASLDVGAQMMKGRSGEVLWDDTIRLGIELRKKIRAMRREF
DEKEKDPARRWFFEPFVPDRVSIPDAASPGGRHDVAWEAISTDQLATDATLWQLAPGEAWHGFPDLAPGFAMTDPNKLTL
LTPGFDRSTGGYAEHGIPAPVVAQYLRENRIVAEKNDLNSLLFLLTPGVEASKAGTLISGLVAFKRLHDDNVLLDDAIPE
FTRKRFARYGKTRLRDLCGEMHRFYREAEVSALQAKQFQPQHLPEIALSPREAARALMRNEVDYLPIDQIAGRIATTPFV
VYPPGIATIVPGERLSDRAKPMIDYLKMFERAFNTFPGFDVEIQGLYKEIDESGRIRLYTYVCAE

Sequences:

>Translated_785_residues
MDYFRRFTFLFAAPVFETDDLAGVRFNQIIEEIQRSGFEVVRARKLEDAEIAVQTDAAIGCMVVDWGKKGLEGKTASLIN
LMRRRGLDFPIILLIRRKRFEDLPVEVLDFIDGYVFLSEETPAFIAKNLISRLKQYAETLKTPFFGTLVDYAEEGNQLWT
CPGHNGGVFYSRSPIGRIFVEHLGEAVFRDDLDNSVLDLGDLLTHEGPALRAQKEAAQIFGAEKTYFVLNGTSTSNKVVL
GALVTDGDLVLFDRNNHKAAHHGALLISGGIPVYVPTVRNAWGLIGPMRWDLLDEEHLRQQIRNNPLVKDPDAWRKERPF
RVAVVEECTYDGTIHSAEMILKRIGHLCDYIMFDEAWAGFMKFHPLYAGRFAMGLSELGPDAPGIIATQSTHKQLASFSQ
ASQIHIKDRHIKGQRRRVEHRRFNESFMQHASTSPFYPLFASLDVGAQMMKGRSGEVLWDDTIRLGIELRKKIRAMRREF
DEKEKDPARRWFFEPFVPDRVSIPDAASPGGRHDVAWEAISTDQLATDATLWQLAPGEAWHGFPDLAPGFAMTDPNKLTL
LTPGFDRSTGGYAEHGIPAPVVAQYLRENRIVAEKNDLNSLLFLLTPGVEASKAGTLISGLVAFKRLHDDNVLLDDAIPE
FTRKRFARYGKTRLRDLCGEMHRFYREAEVSALQAKQFQPQHLPEIALSPREAARALMRNEVDYLPIDQIAGRIATTPFV
VYPPGIATIVPGERLSDRAKPMIDYLKMFERAFNTFPGFDVEIQGLYKEIDESGRIRLYTYVCAE
>Mature_785_residues
MDYFRRFTFLFAAPVFETDDLAGVRFNQIIEEIQRSGFEVVRARKLEDAEIAVQTDAAIGCMVVDWGKKGLEGKTASLIN
LMRRRGLDFPIILLIRRKRFEDLPVEVLDFIDGYVFLSEETPAFIAKNLISRLKQYAETLKTPFFGTLVDYAEEGNQLWT
CPGHNGGVFYSRSPIGRIFVEHLGEAVFRDDLDNSVLDLGDLLTHEGPALRAQKEAAQIFGAEKTYFVLNGTSTSNKVVL
GALVTDGDLVLFDRNNHKAAHHGALLISGGIPVYVPTVRNAWGLIGPMRWDLLDEEHLRQQIRNNPLVKDPDAWRKERPF
RVAVVEECTYDGTIHSAEMILKRIGHLCDYIMFDEAWAGFMKFHPLYAGRFAMGLSELGPDAPGIIATQSTHKQLASFSQ
ASQIHIKDRHIKGQRRRVEHRRFNESFMQHASTSPFYPLFASLDVGAQMMKGRSGEVLWDDTIRLGIELRKKIRAMRREF
DEKEKDPARRWFFEPFVPDRVSIPDAASPGGRHDVAWEAISTDQLATDATLWQLAPGEAWHGFPDLAPGFAMTDPNKLTL
LTPGFDRSTGGYAEHGIPAPVVAQYLRENRIVAEKNDLNSLLFLLTPGVEASKAGTLISGLVAFKRLHDDNVLLDDAIPE
FTRKRFARYGKTRLRDLCGEMHRFYREAEVSALQAKQFQPQHLPEIALSPREAARALMRNEVDYLPIDQIAGRIATTPFV
VYPPGIATIVPGERLSDRAKPMIDYLKMFERAFNTFPGFDVEIQGLYKEIDESGRIRLYTYVCAE

Specific function: Spermidine biosynthesis from ornithine. [C]

COG id: COG1982

COG function: function code E; Arginine/lysine/ornithine decarboxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Orn/Lys/Arg decarboxylase class-I family [H]

Homologues:

Organism=Escherichia coli, GI1786909, Length=694, Percent_Identity=43.9481268011527, Blast_Score=575, Evalue=1e-165,
Organism=Escherichia coli, GI87082193, Length=707, Percent_Identity=43.7057991513437, Blast_Score=567, Evalue=1e-162,
Organism=Escherichia coli, GI221142684, Length=750, Percent_Identity=32.2666666666667, Blast_Score=429, Evalue=1e-121,
Organism=Escherichia coli, GI1786384, Length=744, Percent_Identity=31.3172043010753, Blast_Score=379, Evalue=1e-106,
Organism=Escherichia coli, GI1790573, Length=739, Percent_Identity=29.6346414073072, Blast_Score=368, Evalue=1e-103,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR005308
- InterPro:   IPR011193
- InterPro:   IPR000310
- InterPro:   IPR008286
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01276 OKR_DC_1; PF03711 OKR_DC_1_C; PF03709 OKR_DC_1_N [H]

EC number: =4.1.1.17 [H]

Molecular weight: Translated: 88766; Mature: 88766

Theoretical pI: Translated: 6.56; Mature: 6.56

Prosite motif: PS00703 OKR_DC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYFRRFTFLFAAPVFETDDLAGVRFNQIIEEIQRSGFEVVRARKLEDAEIAVQTDAAIG
CCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCEEEEEECCCEE
CMVVDWGKKGLEGKTASLINLMRRRGLDFPIILLIRRKRFEDLPVEVLDFIDGYVFLSEE
EEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEHEEHHHHCCCCCHHHHHHHCCEEEECCC
TPAFIAKNLISRLKQYAETLKTPFFGTLVDYAEEGNQLWTCPGHNGGVFYSRSPIGRIFV
CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEECCCCCCCEEEECCCHHHHHH
EHLGEAVFRDDLDNSVLDLGDLLTHEGPALRAQKEAAQIFGAEKTYFVLNGTSTSNKVVL
HHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCEEE
GALVTDGDLVLFDRNNHKAAHHGALLISGGIPVYVPTVRNAWGLIGPMRWDLLDEEHLRQ
EEEEECCCEEEEECCCCCCCCCCEEEEECCCCEEECCCCCCCCCCCCHHHHCCCHHHHHH
QIRNNPLVKDPDAWRKERPFRVAVVEECTYDGTIHSAEMILKRIGHLCDYIMFDEAWAGF
HHHCCCCCCCCCCHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
MKFHPLYAGRFAMGLSELGPDAPGIIATQSTHKQLASFSQASQIHIKDRHIKGQRRRVEH
HHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHCCCEEEEECCCCCCHHHHHHH
RRFNESFMQHASTSPFYPLFASLDVGAQMMKGRSGEVLWDDTIRLGIELRKKIRAMRREF
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHH
DEKEKDPARRWFFEPFVPDRVSIPDAASPGGRHDVAWEAISTDQLATDATLWQLAPGEAW
HHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHCCCCEEEECCCCCC
HGFPDLAPGFAMTDPNKLTLLTPGFDRSTGGYAEHGIPAPVVAQYLRENRIVAEKNDLNS
CCCCCCCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCCCCC
LLFLLTPGVEASKAGTLISGLVAFKRLHDDNVLLDDAIPEFTRKRFARYGKTRLRDLCGE
EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHCCHHHHHHHHHHHHHHHHHHHHHH
MHRFYREAEVSALQAKQFQPQHLPEIALSPREAARALMRNEVDYLPIDQIAGRIATTPFV
HHHHHHHHHHHHHHHHCCCCCCCCHHCCCHHHHHHHHHHCCCCCCCHHHHCCHHHCCCEE
VYPPGIATIVPGERLSDRAKPMIDYLKMFERAFNTFPGFDVEIQGLYKEIDESGRIRLYT
EECCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHCCCCCCEEEEE
YVCAE
EEECC
>Mature Secondary Structure
MDYFRRFTFLFAAPVFETDDLAGVRFNQIIEEIQRSGFEVVRARKLEDAEIAVQTDAAIG
CCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCEEEEEECCCEE
CMVVDWGKKGLEGKTASLINLMRRRGLDFPIILLIRRKRFEDLPVEVLDFIDGYVFLSEE
EEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEHEEHHHHCCCCCHHHHHHHCCEEEECCC
TPAFIAKNLISRLKQYAETLKTPFFGTLVDYAEEGNQLWTCPGHNGGVFYSRSPIGRIFV
CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEECCCCCCCEEEECCCHHHHHH
EHLGEAVFRDDLDNSVLDLGDLLTHEGPALRAQKEAAQIFGAEKTYFVLNGTSTSNKVVL
HHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCEEE
GALVTDGDLVLFDRNNHKAAHHGALLISGGIPVYVPTVRNAWGLIGPMRWDLLDEEHLRQ
EEEEECCCEEEEECCCCCCCCCCEEEEECCCCEEECCCCCCCCCCCCHHHHCCCHHHHHH
QIRNNPLVKDPDAWRKERPFRVAVVEECTYDGTIHSAEMILKRIGHLCDYIMFDEAWAGF
HHHCCCCCCCCCCHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
MKFHPLYAGRFAMGLSELGPDAPGIIATQSTHKQLASFSQASQIHIKDRHIKGQRRRVEH
HHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHCCCEEEEECCCCCCHHHHHHH
RRFNESFMQHASTSPFYPLFASLDVGAQMMKGRSGEVLWDDTIRLGIELRKKIRAMRREF
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHH
DEKEKDPARRWFFEPFVPDRVSIPDAASPGGRHDVAWEAISTDQLATDATLWQLAPGEAW
HHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHCCCCEEEECCCCCC
HGFPDLAPGFAMTDPNKLTLLTPGFDRSTGGYAEHGIPAPVVAQYLRENRIVAEKNDLNS
CCCCCCCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCCCCC
LLFLLTPGVEASKAGTLISGLVAFKRLHDDNVLLDDAIPEFTRKRFARYGKTRLRDLCGE
EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHCCHHHHHHHHHHHHHHHHHHHHHH
MHRFYREAEVSALQAKQFQPQHLPEIALSPREAARALMRNEVDYLPIDQIAGRIATTPFV
HHHHHHHHHHHHHHHHCCCCCCCCHHCCCHHHHHHHHHHCCCCCCCHHHHCCHHHCCCEE
VYPPGIATIVPGERLSDRAKPMIDYLKMFERAFNTFPGFDVEIQGLYKEIDESGRIRLYT
EECCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHCCCCCCEEEEE
YVCAE
EEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1939141; 8905232; 9278503 [H]