Click here to switch to the map view.

The map label for this gene is cbiD [H]

Identifier: 146341779

GI number: 146341779

Start: 5098298

End: 5099440

Strand: Direct

Name: cbiD [H]

Synonym: BRADO4898

Alternate gene names: 146341779

Gene position: 5098298-5099440 (Clockwise)

Preceding gene: 146341776

Following gene: 146341783

Centisome position: 68.37

GC content: 70.34

Gene sequence:

>1143_bases
ATGCGATCGGCCATGACGGGATCTGCTGTGGCGCCGAACCGACCGTTGAAGCGTGGCTGGACCACCGGCAGCTGCGCGAC
CGCGGCCGCGCGCGCCGCCTATGAGCTGCTGATCACCGGCCATTGCCCGGACATGGTCGAGATCGCCCTGCCGGGCGGCC
GTCGCGTCAGCTTTGCGATCGCGATGCACGAGACCGGCGACGCCGGCGCGACTGCTGCGGTCGTAAAGGACGCCGGCGAC
GATCCCGACGTCACGCACGGTGCGTTGATCAAGGCAACGGTCCGGCTCGGTGCTGACGGAACCGGCGTCATCTTTCGCGC
CGGTTCCGGGGTCGGCACGGTGACCCGGCCGGGGCTTCCGTTGCCGCCGGGCGAGCCTGCGATCAATCCCGTGCCGCGCG
AGATGATCAAGGCCGCGATCCGCGAAGCCGCGTCCGCGCTCGGCGGCCCGCGCGACGTGGCCGTCACCATCTCCATCCCC
GGAGGCGAGGAGCTGGCAAGGAAAACGCTGAACCCGCGGCTCGGCATCGTCGGCGGCCTGTCGGTCCTGGGCACGACCGG
AGTCGTTGTCCCCTTCAGCTGCGCGGCGTGGATCCATTCGATTTATCGCGGCATCGACGTCGCGCGCGCCGGCGGCCTGG
CGCACGTCGCCGGCGCCACCGGCAACACGTCCGAGAAGGCCGTGCAGCAGCTGTACCAATTGCCGGACGCGGCGCTGATC
GACATGGGCGACTTCGCGGGCGGCATGATGAAATATCTGCGCCGGCACCCGGTGGCGCGCGTGACCGTGGCCGGCGGCTT
CGCAAAGATGACCAAGCTTGGCCAGGGCCTGCTCGATCTGCATTCGCGGGCTGGCGAGGTCGATCTCGGCTGGCTTGCCG
ACACGCTGCGCCAGGCCCACGCGCCCGACGCGCTCGTCGCGACGGCACGCGGCGCCAACACGGCCTTGCAGGTGCTGCAG
GAGGCAGAACGCGTGGGCTTCCCTGCTGGACAGGTCGTTGCTGACGCGGCCTGGCAGACCGCGCGCCGCGCGCTCGGCGA
CAACGACATCGCGCTCGATATCGCGGTGTTCGACCGCGGTGGCAGACTGGTCGGCCAAAGCCACGGAGCTAATCATTCGC
CCCTCCCGCGGAAGCGCCGCTGA

Upstream 100 bases:

>100_bases
GTCGTCTTCCCCGCCCCCGAGCGCGGGGCCGCGATGATAAGTCCCTTGGTCGCCGTTCCGGTCATCGTCGGGGCCCCGCC
GCCGCCCGGCAAAATATGCT

Downstream 100 bases:

>100_bases
TAATCGGCATCATACAGCGCGCTGTTGCAAAAATTTCTGCCGCTGAGCGCACGGCCGACCAGGATCAGCGCGGTCCGCTC
CAGCCTGGCCGCGGCGGCGC

Product: cobalt-precorrin-6A synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 380; Mature: 380

Protein sequence:

>380_residues
MRSAMTGSAVAPNRPLKRGWTTGSCATAAARAAYELLITGHCPDMVEIALPGGRRVSFAIAMHETGDAGATAAVVKDAGD
DPDVTHGALIKATVRLGADGTGVIFRAGSGVGTVTRPGLPLPPGEPAINPVPREMIKAAIREAASALGGPRDVAVTISIP
GGEELARKTLNPRLGIVGGLSVLGTTGVVVPFSCAAWIHSIYRGIDVARAGGLAHVAGATGNTSEKAVQQLYQLPDAALI
DMGDFAGGMMKYLRRHPVARVTVAGGFAKMTKLGQGLLDLHSRAGEVDLGWLADTLRQAHAPDALVATARGANTALQVLQ
EAERVGFPAGQVVADAAWQTARRALGDNDIALDIAVFDRGGRLVGQSHGANHSPLPRKRR

Sequences:

>Translated_380_residues
MRSAMTGSAVAPNRPLKRGWTTGSCATAAARAAYELLITGHCPDMVEIALPGGRRVSFAIAMHETGDAGATAAVVKDAGD
DPDVTHGALIKATVRLGADGTGVIFRAGSGVGTVTRPGLPLPPGEPAINPVPREMIKAAIREAASALGGPRDVAVTISIP
GGEELARKTLNPRLGIVGGLSVLGTTGVVVPFSCAAWIHSIYRGIDVARAGGLAHVAGATGNTSEKAVQQLYQLPDAALI
DMGDFAGGMMKYLRRHPVARVTVAGGFAKMTKLGQGLLDLHSRAGEVDLGWLADTLRQAHAPDALVATARGANTALQVLQ
EAERVGFPAGQVVADAAWQTARRALGDNDIALDIAVFDRGGRLVGQSHGANHSPLPRKRR
>Mature_380_residues
MRSAMTGSAVAPNRPLKRGWTTGSCATAAARAAYELLITGHCPDMVEIALPGGRRVSFAIAMHETGDAGATAAVVKDAGD
DPDVTHGALIKATVRLGADGTGVIFRAGSGVGTVTRPGLPLPPGEPAINPVPREMIKAAIREAASALGGPRDVAVTISIP
GGEELARKTLNPRLGIVGGLSVLGTTGVVVPFSCAAWIHSIYRGIDVARAGGLAHVAGATGNTSEKAVQQLYQLPDAALI
DMGDFAGGMMKYLRRHPVARVTVAGGFAKMTKLGQGLLDLHSRAGEVDLGWLADTLRQAHAPDALVATARGANTALQVLQ
EAERVGFPAGQVVADAAWQTARRALGDNDIALDIAVFDRGGRLVGQSHGANHSPLPRKRR

Specific function: May catalyze the methylation of C-1 in cobalt-precorrin- 5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A [H]

COG id: COG1903

COG function: function code H; Cobalamin biosynthesis protein CbiD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002748 [H]

Pfam domain/function: PF01888 CbiD [H]

EC number: NA

Molecular weight: Translated: 39136; Mature: 39136

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSAMTGSAVAPNRPLKRGWTTGSCATAAARAAYELLITGHCPDMVEIALPGGRRVSFAI
CCCCCCCCCCCCCCCHHCCCCCCHHHHHHHHHHEEEEEECCCCCEEEEECCCCCEEEEEE
AMHETGDAGATAAVVKDAGDDPDVTHGALIKATVRLGADGTGVIFRAGSGVGTVTRPGLP
EEECCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCCC
LPPGEPAINPVPREMIKAAIREAASALGGPRDVAVTISIPGGEELARKTLNPRLGIVGGL
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHCCCCCCEEECH
SVLGTTGVVVPFSCAAWIHSIYRGIDVARAGGLAHVAGATGNTSEKAVQQLYQLPDAALI
HHHCCCCEEEHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCEEE
DMGDFAGGMMKYLRRHPVARVTVAGGFAKMTKLGQGLLDLHSRAGEVDLGWLADTLRQAH
ECHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC
APDALVATARGANTALQVLQEAERVGFPAGQVVADAAWQTARRALGDNDIALDIAVFDRG
CCCCEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCC
GRLVGQSHGANHSPLPRKRR
CEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MRSAMTGSAVAPNRPLKRGWTTGSCATAAARAAYELLITGHCPDMVEIALPGGRRVSFAI
CCCCCCCCCCCCCCCHHCCCCCCHHHHHHHHHHEEEEEECCCCCEEEEECCCCCEEEEEE
AMHETGDAGATAAVVKDAGDDPDVTHGALIKATVRLGADGTGVIFRAGSGVGTVTRPGLP
EEECCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCCC
LPPGEPAINPVPREMIKAAIREAASALGGPRDVAVTISIPGGEELARKTLNPRLGIVGGL
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHCCCCCCEEECH
SVLGTTGVVVPFSCAAWIHSIYRGIDVARAGGLAHVAGATGNTSEKAVQQLYQLPDAALI
HHHCCCCEEEHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCEEE
DMGDFAGGMMKYLRRHPVARVTVAGGFAKMTKLGQGLLDLHSRAGEVDLGWLADTLRQAH
ECHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC
APDALVATARGANTALQVLQEAERVGFPAGQVVADAAWQTARRALGDNDIALDIAVFDRG
CCCCEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCC
GRLVGQSHGANHSPLPRKRR
CEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA