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The map label for this gene is ycjO [C]

Identifier: 146341522

GI number: 146341522

Start: 4806262

End: 4807224

Strand: Reverse

Name: ycjO [C]

Synonym: BRADO4619

Alternate gene names: 146341522

Gene position: 4807224-4806262 (Counterclockwise)

Preceding gene: 146341523

Following gene: 146341521

Centisome position: 64.47

GC content: 62.51

Gene sequence:

>963_bases
ATGACCGACCAAACCGGATTGAGCGGCCTCGTCGACCGCGCCGCCCTGGTGACGCCGCCCGCAATGGTTCGTCGCGTGCG
CGGCCTGTCGGAGCGCGCCATCGCCTGGCTGTTCATCACGCCGACCATGCTGCTGCTGCTTGCGATCAACATCTTTCCGT
TGATCTGGACGATTCGCCTGTCATTCACCAACTATCGCGCCAACCGTCCGAACGCGACGGTGCTCGATGTCGGGCTTGCC
AACTACCAGTCCATCCTGACCGACCCCGACGTGTGGGCCGCGATGACGGTGACGGCGCGCTTCGTGTTCTGGAGCATCCT
GATTCAGACCGTGCTCGGCTTCGCGCTGGCTTGGCTGATCGACAAGAAGTTTCGCGGCCATGGTCTGTGGACCACCTTGA
TCCTGCTGCCGATGATGCTGTCGCCCGCGGTTGTCGGCAACTTCTGGACTTTCCTTTACCAACCGCAGACCGGCCTGTTC
AATTACGTCGTCTCGGCCGTGACCGGCGCGCCGGCATCCTCGTTCCAGATGCTCGCACAGGTGCCGCTGGCGCCCTGGGC
GATCGTCATCGTCGATACCTGGATGTGGACGCCTTACGTGATGCTGATCTGCCTCGCCGGCCTGCGCTCGATCCCGGACT
ATATCTACGAGGCGGCGGAGGTCGATCGCGCCTCGCCGTGGCGGCAGTTCTGGTCGATCACCTTGCCGATGGCGCTGCCC
TTCATCATGCTCGCGGTGCTGTTCCGCGGCATCGAGAATTTCAAGATGTTCGACATGGTGAACCTGCTCACAGGTGGGGG
GCCTGGCTCGACCACGGAGGTGGCCTCGATCACCCTCAAGCGCGAGGCGTTCGAGAAATGGCGGACCGGTTACTCCTCGG
CCTTTGCCATCATCCTGTTCGTCACCGTGTTCGGTCTCGCCAACATCTACGTCAAGGCGCTCAACCGGGTGAAAAGCCGA
TGA

Upstream 100 bases:

>100_bases
ATCTCTCCACGAGTCGTTCCGGGGCGCGCGAAGCGCGAGCCCGGAATGGCGAGAGGATAGAGCAGCGCCATCAAACAGCC
ACCGTAAAGCAGTTCCTCGC

Downstream 100 bases:

>100_bases
CCGGTCTCGTCTCCGCCCATTCCGTGGTCGATCCGTCGCCGCTGACGAAGCGCATCGCGGCCGCCGTCGTGATCGCGTAT
GCGCTGGTCACGTTGGTGCC

Product: putative sugar ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 319

Protein sequence:

>320_residues
MTDQTGLSGLVDRAALVTPPAMVRRVRGLSERAIAWLFITPTMLLLLAINIFPLIWTIRLSFTNYRANRPNATVLDVGLA
NYQSILTDPDVWAAMTVTARFVFWSILIQTVLGFALAWLIDKKFRGHGLWTTLILLPMMLSPAVVGNFWTFLYQPQTGLF
NYVVSAVTGAPASSFQMLAQVPLAPWAIVIVDTWMWTPYVMLICLAGLRSIPDYIYEAAEVDRASPWRQFWSITLPMALP
FIMLAVLFRGIENFKMFDMVNLLTGGGPGSTTEVASITLKREAFEKWRTGYSSAFAIILFVTVFGLANIYVKALNRVKSR

Sequences:

>Translated_320_residues
MTDQTGLSGLVDRAALVTPPAMVRRVRGLSERAIAWLFITPTMLLLLAINIFPLIWTIRLSFTNYRANRPNATVLDVGLA
NYQSILTDPDVWAAMTVTARFVFWSILIQTVLGFALAWLIDKKFRGHGLWTTLILLPMMLSPAVVGNFWTFLYQPQTGLF
NYVVSAVTGAPASSFQMLAQVPLAPWAIVIVDTWMWTPYVMLICLAGLRSIPDYIYEAAEVDRASPWRQFWSITLPMALP
FIMLAVLFRGIENFKMFDMVNLLTGGGPGSTTEVASITLKREAFEKWRTGYSSAFAIILFVTVFGLANIYVKALNRVKSR
>Mature_319_residues
TDQTGLSGLVDRAALVTPPAMVRRVRGLSERAIAWLFITPTMLLLLAINIFPLIWTIRLSFTNYRANRPNATVLDVGLAN
YQSILTDPDVWAAMTVTARFVFWSILIQTVLGFALAWLIDKKFRGHGLWTTLILLPMMLSPAVVGNFWTFLYQPQTGLFN
YVVSAVTGAPASSFQMLAQVPLAPWAIVIVDTWMWTPYVMLICLAGLRSIPDYIYEAAEVDRASPWRQFWSITLPMALPF
IMLAVLFRGIENFKMFDMVNLLTGGGPGSTTEVASITLKREAFEKWRTGYSSAFAIILFVTVFGLANIYVKALNRVKSR

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=271, Percent_Identity=28.7822878228782, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1790465, Length=264, Percent_Identity=29.5454545454545, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1789861, Length=226, Percent_Identity=29.2035398230088, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35876; Mature: 35745

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDQTGLSGLVDRAALVTPPAMVRRVRGLSERAIAWLFITPTMLLLLAINIFPLIWTIRL
CCCCCCHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SFTNYRANRPNATVLDVGLANYQSILTDPDVWAAMTVTARFVFWSILIQTVLGFALAWLI
HHHHCCCCCCCCEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DKKFRGHGLWTTLILLPMMLSPAVVGNFWTFLYQPQTGLFNYVVSAVTGAPASSFQMLAQ
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHH
VPLAPWAIVIVDTWMWTPYVMLICLAGLRSIPDYIYEAAEVDRASPWRQFWSITLPMALP
CCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
FIMLAVLFRGIENFKMFDMVNLLTGGGPGSTTEVASITLKREAFEKWRTGYSSAFAIILF
HHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
VTVFGLANIYVKALNRVKSR
HHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TDQTGLSGLVDRAALVTPPAMVRRVRGLSERAIAWLFITPTMLLLLAINIFPLIWTIRL
CCCCCHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SFTNYRANRPNATVLDVGLANYQSILTDPDVWAAMTVTARFVFWSILIQTVLGFALAWLI
HHHHCCCCCCCCEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DKKFRGHGLWTTLILLPMMLSPAVVGNFWTFLYQPQTGLFNYVVSAVTGAPASSFQMLAQ
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHH
VPLAPWAIVIVDTWMWTPYVMLICLAGLRSIPDYIYEAAEVDRASPWRQFWSITLPMALP
CCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
FIMLAVLFRGIENFKMFDMVNLLTGGGPGSTTEVASITLKREAFEKWRTGYSSAFAIILF
HHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
VTVFGLANIYVKALNRVKSR
HHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]